Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 0.0e+00 2293.1 1172 100.0
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 0.0e+00 2211.8 1172 96.2
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 0.0e+00 2166.0 1171 94.6
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 0.0e+00 2165.6 1170 95.0
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 0.0e+00 2161.3 1171 94.5
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 0.0e+00 2145.9 1172 93.9
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 0.0e+00 2105.5 1173 91.8
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 2099.7 1178 93.2
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 2094.7 1178 93.1
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 0.0e+00 1872.1 1176 83.5
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 0.0e+00 1740.3 1182 77.4
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1738.8 1179 77.0
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 0.0e+00 1736.1 1178 77.2
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 0.0e+00 1733.8 1178 76.9
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 0.0e+00 1732.2 1178 76.9
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1731.5 1175 76.9
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1730.3 1175 76.8
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 0.0e+00 1724.1 1175 76.9
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1724.1 1190 76.1
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1718.7 1177 76.3
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 0.0e+00 1717.2 1188 76.2
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1715.7 1178 75.9
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1713.4 1177 76.4
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1711.8 1178 76.1
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1711.0 1176 76.2
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1708.3 1180 76.3
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1708.3 1180 76.3
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1706.4 1222 74.2
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1704.9 1178 76.1
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1704.1 1226 74.1
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1702.2 1226 74.0
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1700.6 1226 73.7
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1700.6 1176 75.8
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1700.3 1183 75.4
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1694.9 1200 74.6
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 0.0e+00 1692.9 1174 76.4
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1692.9 1179 75.6
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1688.3 1182 75.4
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 0.0e+00 1686.4 1174 74.0
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1684.1 1179 75.3
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1684.1 1177 75.1
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 0.0e+00 1676.8 1180 74.6
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1676.0 1200 74.1
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1672.1 1231 71.7
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1671.4 1177 75.4
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 0.0e+00 1671.0 1178 75.0
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1671.0 1175 75.1
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1670.6 1175 74.9
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1668.3 1180 74.9
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 0.0e+00 1667.5 1177 75.4
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1664.8 1213 73.2
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1664.8 1173 75.1
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1664.4 1179 75.0
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1663.7 1215 73.2
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1662.9 1177 73.1
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1662.5 1177 74.3
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1660.2 1181 74.4
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1657.1 1235 71.4
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 0.0e+00 1654.4 1219 72.9
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 0.0e+00 1649.4 1180 74.0
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1645.6 1176 73.0
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1645.2 1178 74.2
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 0.0e+00 1641.7 1215 72.3
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1640.9 1177 73.3
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1640.6 1177 72.9
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1634.0 1177 73.0
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1632.8 1210 72.4
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1632.5 1178 72.9
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1627.5 1184 73.1
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 0.0e+00 1621.3 1174 72.9
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1621.3 1174 72.1
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1620.5 1176 71.9
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1619.0 1177 72.0
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 0.0e+00 1617.4 1236 70.1
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1617.1 1176 72.3
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1614.7 1178 72.0
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1611.7 1179 71.9
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1610.9 1175 72.0
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1609.7 1236 69.2
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1606.3 1176 71.9
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1604.0 1174 71.7
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1603.2 1165 72.4
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1602.0 1237 68.6
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1601.6 1177 73.0
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 0.0e+00 1601.6 1178 71.1
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1597.8 1175 71.0
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 0.0e+00 1597.0 1180 71.8
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1594.7 1176 73.1
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1592.0 1209 70.8
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 0.0e+00 1590.9 1173 71.2
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 0.0e+00 1590.1 1172 71.4
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1587.0 1183 71.3
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 0.0e+00 1581.6 1178 71.1
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1581.6 1183 71.3
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 0.0e+00 1580.8 1181 70.5
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1579.7 1170 72.5
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1575.8 1219 69.3
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1572.8 1171 71.5
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1572.4 1189 70.6
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1571.6 1191 71.0
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1568.5 1181 70.5
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 0.0e+00 1567.4 1106 74.8
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 0.0e+00 1567.4 1180 70.8
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1557.7 1155 71.7
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 0.0e+00 1555.8 1075 76.1
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1553.9 1169 71.2
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1548.1 1177 70.7
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1543.9 1183 69.6
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 0.0e+00 1536.9 1182 70.8
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1531.5 1185 69.3
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 0.0e+00 1517.3 1176 67.5
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1513.8 1172 67.7
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1508.8 1178 67.1
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1496.5 1205 67.6
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 0.0e+00 1484.2 1159 68.9
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1466.1 1177 65.9
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1463.7 1177 65.8
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1442.6 1115 69.4
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 0.0e+00 1422.1 806 92.4
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1387.1 1179 63.8
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 0.0e+00 1377.5 949 75.9
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1359.0 950 74.8
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 0.0e+00 1339.7 1186 62.7
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 0.0e+00 1290.8 1040 69.0
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1271.5 972 71.1
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1268.8 949 72.1
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1203.7 1174 57.0
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1192.9 959 68.1
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 0.0e+00 1164.4 892 70.5
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1159.1 977 66.4
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1132.1 971 65.6
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 1.2e-310 1070.1 814 70.3
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 3.0e-301 1038.9 818 69.1
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 1.1e-298 1030.4 811 70.9
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 4.1e-298 1028.5 1166 52.9
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 8.3e-283 977.6 1175 47.8
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 6.6e-272 941.4 724 70.7
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 1.9e-271 939.9 1202 45.8
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 1.7e-264 916.8 540 84.3
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 3.2e-234 816.2 718 63.2
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 5.1e-232 808.9 605 73.6
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 1.4e-184 651.4 431 76.1
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 4.1e-165 586.6 360 81.4
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 1.5e-162 578.2 307 93.2
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 1.5e-162 578.2 307 93.2
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 8.3e-134 482.6 307 76.5
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 2.1e-132 478.0 896 38.6
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 3.2e-117 427.6 804 36.6
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 2.5e-114 417.9 615 43.7
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 2.4e-112 411.4 288 75.0
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 7.6e-103 379.8 1317 28.4
Cpa.g.sc26.81 Carica papaya HOM05D003952 ORTHO05D005083 3.8e-94 350.9 227 74.4
Lj4A703G54 Lonicera japonica HOM05D003952 ORTHO05D005083 2.2e-81 308.5 201 75.1
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 3.6e-76 291.2 505 39.6
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 2.0e-74 285.4 266 61.3
COL.COLO4_13782 Corchorus olitorius HOM05D003952 ORTHO05D005083 2.6e-74 285.0 182 76.4
HanXRQChr10g0278641 Helianthus annuus HOM05D003952 ORTHO05D005083 2.6e-74 285.0 208 68.8
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 5.7e-66 257.3 186 67.2
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 1.1e-64 253.1 144 85.4
Lsat_1_v5_gn_5_129380 Lactuca sativa HOM05D003952 ORTHO05D015589 1.6e-63 249.2 179 70.4
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 1.7e-62 245.7 254 57.9
Lalb_Chr01g0009781 Lupinus albus HOM05D003952 ORTHO05D005083 8.2e-57 226.9 190 64.2
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 1.8e-51 209.1 130 81.5
CANSAT25G0696 Cannabis sativa HOM05D003952 ORTHO05D005083 4.8e-49 201.1 118 87.3
Psat5g166880 Pisum sativum HOM05D003952 ORTHO05D005083 5.0e-46 191.0 201 55.7
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 1.9e-45 189.1 125 74.4
Duzib041G0651 Durio zibethinus HOM05D003952 ORTHO05D005083 5.6e-37 161.0 92 89.1
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 8.6e-30 137.1 86 76.7
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 8.6e-30 137.1 91 71.4
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 8.6e-30 137.1 91 71.4
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 5.6e-21 107.8 78 71.8
Nn3g20398 Nelumbo nucifera HOM05D003952 ORTHO05D005083 1.8e-19 102.8 83 65.1
Lsat_1_v5_gn_7_62680 Lactuca sativa HOM05D003952 ORTHO05D015589 3.4e-18 98.6 78 57.7
Lsat_1_v5_gn_3_73081 Lactuca sativa HOM05D003952 ORTHO05D015589 1.9e-16 92.8 47 78.7
TPR.G25241 Trifolium pratense HOM05D003952 ORTHO05D048898 6.0e-15 87.8 59 71.2
PGSC0003DMG400001110 Solanum tuberosum HOM05D003952 ORTHO05D005083 2.1e-12 79.3 84 47.6
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 1.1e-11 77.0 95 49.5


User provided reference genes

Program Settings