Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g20260 Schrenkiella parvula HOM05D005414 ORTHO05D006844 2.2e-138 495.7 273 100.0
Thhalv10008541m.g Eutrema salsugineum HOM05D005414 ORTHO05D006844 1.3e-130 469.9 256 94.5
BcaNung07190 Brassica carinata HOM05D005414 ORTHO05D006844 1.9e-129 466.1 256 93.8
BolC5t30882H Brassica oleracea HOM05D005414 ORTHO05D006844 2.1e-128 462.6 255 93.3
A09p41990 Brassica napus HOM05D005414 ORTHO05D006844 6.0e-128 461.1 255 92.2
BcaNung07397 Brassica carinata HOM05D005414 ORTHO05D006844 7.9e-128 460.7 256 92.6
BraA09t39686Z Brassica rapa HOM05D005414 ORTHO05D006844 3.0e-127 458.8 253 92.5
C05p21870 Brassica napus HOM05D005414 ORTHO05D006844 3.3e-126 455.3 253 92.1
AL1G36290 Arabidopsis lyrata HOM05D005414 ORTHO05D006844 5.9e-123 444.5 256 89.1
Carub.0001s2226 Capsella rubella HOM05D005414 ORTHO05D006844 1.7e-122 443.0 256 89.5
AT1G22750 Arabidopsis thaliana HOM05D005414 ORTHO05D006844 1.4e-111 406.8 240 87.9
Aa31LG7G6700 Aethionema arabicum HOM05D005414 ORTHO05D006844 9.7e-110 400.6 245 82.9
THA.LOC104809748 Tarenaya hassleriana HOM05D005414 ORTHO05D006844 1.1e-89 334.0 244 69.7
CARHR023110 Cardamine hirsuta HOM05D005414 ORTHO05D006844 9.5e-73 277.7 169 83.4
Ciclev10002272m.g Citrus clementina HOM05D005414 ORTHO05D006844 1.3e-69 267.3 246 55.3
Atru.chr13.1979 Acer truncatum HOM05D005414 ORTHO05D006844 9.2e-68 261.2 248 54.4
CiPaw.16G007400 Carya illinoinensis HOM05D005414 ORTHO05D006844 3.5e-67 259.2 238 55.5
Actinidia17760 Actinidia chinensis HOM05D005414 ORTHO05D006844 6.0e-67 258.5 237 56.1
Prupe.8G044100 Prunus persica HOM05D005414 ORTHO05D006844 1.3e-66 257.3 239 56.5
PGR042G0638 Punica granatum HOM05D005414 ORTHO05D006844 2.3e-66 256.5 248 54.4
Gohir.A06G116400 Gossypium hirsutum HOM05D005414 ORTHO05D006844 4.3e-65 252.3 246 52.8
Lj5g0014662 Lotus japonicus HOM05D005414 ORTHO05D006844 4.3e-65 252.3 242 54.1
TPR.G17052 Trifolium pratense HOM05D005414 ORTHO05D006844 2.1e-64 250.0 243 52.3
Lalb_Chr02g0141631 Lupinus albus HOM05D005414 ORTHO05D006844 6.2e-64 248.4 243 52.3
MD10G1038100 Malus domestica HOM05D005414 ORTHO05D006844 8.0e-64 248.1 239 54.4
Medtr1g097430 Medicago truncatula HOM05D005414 ORTHO05D006844 8.0e-64 248.1 240 52.5
CSS0025663 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 3.1e-63 246.1 237 54.9
CSS0029717 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 3.1e-63 246.1 237 54.9
Thecc.08G163500 Theobroma cacao HOM05D005414 ORTHO05D006844 3.1e-63 246.1 240 55.4
Gohir.D06G114900 Gossypium hirsutum HOM05D005414 ORTHO05D006844 4.0e-63 245.7 246 52.4
Gorai.010G131400 Gossypium raimondii HOM05D005414 ORTHO05D006844 4.0e-63 245.7 240 52.9
Duzib041G0057 Durio zibethinus HOM05D005414 ORTHO05D006844 8.9e-63 244.6 236 55.5
Glyma.20G171300 Glycine max HOM05D005414 ORTHO05D006844 8.9e-63 244.6 243 51.0
Sabra05G0151200 Salix brachista HOM05D005414 ORTHO05D006844 8.9e-63 244.6 232 54.7
RcHm_v2.0_Chr6g0273701 Rosa chinensis HOM05D005414 ORTHO05D006844 1.2e-62 244.2 238 55.5
arahy.Tifrunner.gnm1.ann1.X1PAW1 Arachis hypogaea HOM05D005414 ORTHO05D006844 2.6e-62 243.0 240 52.1
Rhsim06G0093200 Rhododendron simsii HOM05D005414 ORTHO05D006844 2.6e-62 243.0 237 53.2
Cc10_g06420 Coffea canephora HOM05D005414 ORTHO05D006844 4.4e-62 242.3 239 53.6
FvH4_2g12810 Fragaria vesca HOM05D005414 ORTHO05D006844 7.5e-62 241.5 250 53.6
SalBow7G3693 Salvia bowleyana HOM05D005414 ORTHO05D006844 9.8e-62 241.1 240 51.2
Psat6g189560 Pisum sativum HOM05D005414 ORTHO05D006844 1.3e-61 240.7 245 51.0
arahy.Tifrunner.gnm1.ann1.66PYZ2 Arachis hypogaea HOM05D005414 ORTHO05D006844 2.9e-61 239.6 240 51.7
Eucgr.F02672 Eucalyptus grandis HOM05D005414 ORTHO05D006844 2.9e-61 239.6 240 51.2
Migut.C00158 Erythranthe guttata HOM05D005414 ORTHO05D006844 8.3e-61 238.0 238 52.9
Potri.002G062600 Populus trichocarpa HOM05D005414 ORTHO05D006844 1.1e-60 237.7 235 53.2
FAN27G1467 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.9e-60 236.9 249 53.4
Phvul.007G085100 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 2.4e-60 236.5 237 51.1
VMungo0720G1060 Vigna mungo HOM05D005414 ORTHO05D006844 2.4e-60 236.5 243 49.0
PSO210G6322 Papaver somniferum HOM05D005414 ORTHO05D006844 5.4e-60 235.3 238 52.1
PSO170G2436 Papaver somniferum HOM05D005414 ORTHO05D006844 1.6e-59 233.8 236 52.5
Hma1.2p1_2282F.1_g318850 Hydrangea macrophylla HOM05D005414 ORTHO05D006844 2.1e-59 233.4 237 53.6
SGA_v2.0_scaffold188G40302 Striga asiatica HOM05D005414 ORTHO05D006844 1.0e-58 231.1 249 48.2
Solyc04g072050.4 Solanum lycopersicum HOM05D005414 ORTHO05D006844 1.7e-58 230.3 245 48.2
Sopen04g028220 Solanum pennellii HOM05D005414 ORTHO05D006844 1.7e-58 230.3 245 48.2
GSVIVG01013697001 Vitis vinifera HOM05D005414 ORTHO05D006844 1.7e-58 230.3 221 55.7
PGSC0003DMG400031145 Solanum tuberosum HOM05D005414 ORTHO05D006844 2.3e-58 229.9 245 48.2
Sc26g0002600 Simmondsia chinensis HOM05D005414 ORTHO05D006844 3.0e-58 229.6 250 50.0
MBI04_g42207_MAGBIO Magnolia biondii HOM05D005414 ORTHO05D006844 5.1e-58 228.8 257 47.1
Phvul.007G085000 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 1.1e-57 227.6 242 48.8
vmacro21198 Vaccinium macrocarpon HOM05D005414 ORTHO05D006844 1.4e-55 220.7 206 54.4
HanXRQChr05g0144171 Helianthus annuus HOM05D005414 ORTHO05D006844 4.0e-55 219.2 234 48.3
Glyma.20G171400 Glycine max HOM05D005414 ORTHO05D006844 8.9e-55 218.0 242 47.1
Manes.18G096200 Manihot esculenta HOM05D005414 ORTHO05D006844 1.5e-54 217.2 201 54.2
unitig_32.g11168 Utricularia gibba HOM05D005414 ORTHO05D006844 4.4e-54 215.7 245 47.8
QL02p036452 Quercus lobata HOM05D005414 ORTHO05D006844 5.8e-54 215.3 227 51.1
MSTRG.24938 Avicennia marina HOM05D005414 ORTHO05D006844 2.2e-53 213.4 233 48.9
Nn5g28873 Nelumbo nucifera HOM05D005414 ORTHO05D000799 1.1e-52 211.1 198 52.0
Peaxi162Scf00226g00114 Petunia axillaris HOM05D005414 ORTHO05D006844 3.2e-52 209.5 265 43.8
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 7.1e-52 208.4 208 50.0
TAR628G0132 Trochodendron aralioides HOM05D005414 ORTHO05D000799 9.2e-52 208.0 198 53.5
CDE05G3275 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 1.2e-51 207.6 231 47.2
ECA232G1443 Erigeron canadensis HOM05D005414 ORTHO05D006844 2.7e-51 206.5 235 48.5
Sed0023257 Sechium edule HOM05D005414 ORTHO05D006844 2.3e-50 203.4 249 43.4
CDE05G1245 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 3.0e-50 203.0 221 47.5
TWI60G0913 Tripterygium wilfordii HOM05D005414 ORTHO05D006844 1.9e-49 200.3 212 49.5
Zm00001eb385480 Zea mays HOM05D005414 ORTHO05D006844 1.6e-48 197.2 244 43.9
Solyc04g072031.1 Solanum lycopersicum HOM05D005414 ORTHO05D006844 2.8e-48 196.4 202 48.5
DCAR_009609 Daucus carota HOM05D005414 ORTHO05D006844 4.7e-48 195.7 186 53.8
MELO3C030042.2 Cucumis melo HOM05D005414 ORTHO05D006844 6.2e-48 195.3 238 43.3
Aqoxy5G02011 Aquilegia oxysepala HOM05D005414 ORTHO05D006844 2.4e-47 193.4 194 50.0
Os06g0581300 Oryza sativa ssp. japonica HOM05D005414 ORTHO05D006844 2.4e-47 193.4 223 43.5
CAN.G564.21 Capsicum annuum HOM05D005414 ORTHO05D006844 8.9e-47 191.4 196 49.0
QL02p036925 Quercus lobata HOM05D005414 ORTHO05D006844 1.2e-46 191.0 296 39.5
CsaV3_6G004870 Cucumis sativus L. HOM05D005414 ORTHO05D006844 2.0e-46 190.3 249 41.4
CANSAT25G0738 Cannabis sativa HOM05D005414 ORTHO05D006844 5.8e-46 188.7 243 46.9
FAN24G1739 Fragaria x ananassa HOM05D005414 ORTHO05D006844 9.9e-46 188.0 247 45.7
MELO3C019962.2 Cucumis melo HOM05D005414 ORTHO05D006844 7.1e-44 181.8 245 42.0
CsaV3_6G004860 Cucumis sativus L. HOM05D005414 ORTHO05D006844 1.2e-43 181.0 246 40.2
CAN.G564.22 Capsicum annuum HOM05D005414 ORTHO05D006844 2.1e-43 180.3 197 49.2
ClCG08G007190 Citrullus lanatus HOM05D005414 ORTHO05D006844 5.1e-42 175.6 238 41.2
Sabra02G0050500 Salix brachista HOM05D005414 ORTHO05D006844 1.9e-41 173.7 202 46.5
Lsat_1_v5_gn_4_170780 Lactuca sativa HOM05D005414 ORTHO05D006844 1.2e-38 164.5 236 41.1
Hund26672 Selenicereus undatus HOM05D005414 ORTHO05D006844 2.0e-38 163.7 185 47.6
HanXRQChr11g0320131 Helianthus annuus HOM05D005414 ORTHO05D006844 1.7e-37 160.6 240 37.5
Nitab4.5_0001000g0190 Nicotiana tabacum HOM05D005414 ORTHO05D006844 1.7e-37 160.6 237 40.5
Cpa.g.sc26.122 Carica papaya HOM05D005414 ORTHO05D006844 1.4e-36 157.5 168 47.6
ECA232G3911 Erigeron canadensis HOM05D005414 ORTHO05D006844 3.2e-36 156.4 247 38.5
FAN15G1775 Fragaria x ananassa HOM05D005414 ORTHO05D006844 7.1e-36 155.2 282 38.7
HanXRQChr11g0320121 Helianthus annuus HOM05D005414 ORTHO05D006844 3.5e-35 152.9 235 37.4
Lsat_1_v5_gn_9_42501 Lactuca sativa HOM05D005414 ORTHO05D006844 4.6e-35 152.5 237 35.9
Nitab4.5_0007691g0020 Nicotiana tabacum HOM05D005414 ORTHO05D006844 1.0e-34 151.4 239 39.3
HanXRQChr11g0320151 Helianthus annuus HOM05D005414 ORTHO05D006844 2.3e-34 150.2 250 34.8
Potri.005G198600 Populus trichocarpa HOM05D005414 ORTHO05D006844 1.1e-33 147.9 192 44.3
Lsat_1_v5_gn_9_42481 Lactuca sativa HOM05D005414 ORTHO05D006844 7.3e-33 145.2 227 38.8
HanXRQChr11g0320141 Helianthus annuus HOM05D005414 ORTHO05D006844 6.2e-32 142.1 243 33.7
HanXRQChr15g0484961 Helianthus annuus HOM05D005414 ORTHO05D006844 1.0e-26 124.8 240 35.4
Lsat_1_v5_gn_1_83841 Lactuca sativa HOM05D005414 ORTHO05D006844 1.8e-26 124.0 247 32.0
HanXRQChr07g0196141 Helianthus annuus HOM05D005414 ORTHO05D006844 6.7e-26 122.1 232 35.8
ATR1120G143 Amborella trichopoda HOM05D005414 ORTHO05D006844 1.1e-25 121.3 109 56.9
HanXRQChr15g0484681 Helianthus annuus HOM05D005414 ORTHO05D006844 1.1e-25 121.3 240 32.9
Lsat_1_v5_gn_2_41300 Lactuca sativa HOM05D005414 ORTHO05D006844 2.5e-25 120.2 204 33.3
HanXRQChr15g0485041 Helianthus annuus HOM05D005414 ORTHO05D006844 1.6e-24 117.5 236 32.2
SEGI_39181 Sequoiadendron giganteum HOM05D005414 ORTHO05D006844 1.5e-22 110.9 108 51.9
Sopen04g028200 Solanum pennellii HOM05D005414 ORTHO05D006844 5.8e-22 109.0 123 43.9
EL10Ac1g01628 Beta vulgaris HOM05D005414 ORTHO05D006844 1.3e-21 107.8 246 34.1
AUR62032103 Chenopodium quinoa HOM05D005414 ORTHO05D006844 1.3e-21 107.8 184 39.1
TPR.G31416 Trifolium pratense HOM05D005414 ORTHO05D006844 5.5e-20 102.4 104 49.0
HPP92_008789 Vanilla planifolia HOM05D005414 ORTHO05D006844 5.5e-20 102.4 113 49.6
AagrBONN_evm.TU.Sc2ySwM_228.1176 Anthoceros agrestis HOM05D005414 ORTHO05D006844 2.1e-19 100.5 106 48.1
Pp3c21_15140 Physcomitrium patens HOM05D005414 ORTHO05D006844 1.3e-18 97.8 106 47.2
ECA232G0081 Erigeron canadensis HOM05D005414 ORTHO05D006844 1.8e-18 97.4 147 36.7
SMO331G0045 Selaginella moellendorffii HOM05D005414 ORTHO05D006844 3.3e-17 93.2 105 46.7
Lsat_1_v5_gn_1_83961 Lactuca sativa HOM05D005414 ORTHO05D006844 6.2e-16 89.0 206 29.1
CARHR294490 Cardamine hirsuta HOM05D005414 ORTHO05D006844 4.1e-15 86.3 56 78.6
Mapoly0067s0091 Marchantia polymorpha HOM05D005414 ORTHO05D006844 4.1e-15 86.3 108 41.7
CBR_g58808 Chara braunii HOM05D005414 ORTHO05D006844 1.5e-14 84.3 106 43.4
AUR62034915 Chenopodium quinoa HOM05D005414 ORTHO05D006844 3.8e-13 79.7 167 35.9
Lsat_1_v5_gn_1_117841 Lactuca sativa HOM05D001315 ORTHO05D004199 2.7e-11 73.6 170 33.5
Lsat_1_v5_gn_1_20800 Lactuca sativa HOM05D000069 ORTHO05D006844 2.7e-11 73.6 170 33.5
Lsat_1_v5_gn_9_72760 Lactuca sativa HOM05D005414 ORTHO05D006844 6.7e-10 68.9 221 24.9
Sed0017348 Sechium edule HOM05D005414 ORTHO05D006844 1.5e-09 67.8 147 32.7
HanXRQChr01g0001821 Helianthus annuus HOM05D005414 ORTHO05D006844 1.1e-07 61.6 116 31.9
CARHR026570 Cardamine hirsuta HOM05D005414 ORTHO05D006844 1.2e-06 58.2 35 80.0
HanXRQChr11g0320081 Helianthus annuus HOM05D005414 ORTHO05D006844 4.5e-06 56.2 71 42.3


User provided reference genes

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