Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g20190 Schrenkiella parvula HOM05D005065 ORTHO05D005944 6.7e-105 384.0 194 100.0
AL1G36220 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 7.0e-62 241.1 194 68.6
CARHR023050 Cardamine hirsuta HOM05D005065 ORTHO05D005944 9.1e-62 240.7 194 68.6
AT1G22680 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 6.8e-57 224.6 196 67.9
Carub.0001s2220 Capsella rubella HOM05D005065 ORTHO05D005944 4.4e-56 221.9 200 67.5
CARHR064790 Cardamine hirsuta HOM05D005065 ORTHO05D005944 4.1e-38 162.2 219 49.8
Thhalv10019856m.g Eutrema salsugineum HOM05D005065 ORTHO05D005944 2.0e-37 159.8 222 51.4
Carub.0002s1875 Capsella rubella HOM05D005065 ORTHO05D005944 1.0e-36 157.5 224 47.3
THA.LOC104800116 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 6.6e-36 154.8 205 49.3
AL2G31580 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 2.5e-35 152.9 225 45.8
A07p30470 Brassica napus HOM05D005065 ORTHO05D005944 3.3e-35 152.5 208 48.1
C06p35230 Brassica napus HOM05D005065 ORTHO05D005944 4.3e-35 152.1 208 48.1
BcaB03g14918 Brassica carinata HOM05D005065 ORTHO05D005944 9.5e-35 151.0 218 47.2
BraA07t31379Z Brassica rapa HOM05D005065 ORTHO05D005944 9.5e-35 151.0 222 47.3
BraA07t30683Z Brassica rapa HOM05D005065 ORTHO05D005944 1.2e-34 150.6 208 47.6
BolC6t38629H Brassica oleracea HOM05D005065 ORTHO05D005944 4.7e-34 148.7 208 47.6
Sp5g27040 Schrenkiella parvula HOM05D005065 ORTHO05D005944 8.1e-34 147.9 220 46.4
AT1G71970 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 4.0e-33 145.6 220 45.0
BcaB03g15639 Brassica carinata HOM05D005065 ORTHO05D005944 4.0e-33 145.6 217 47.0
BcaC03g15318 Brassica carinata HOM05D005065 ORTHO05D005944 4.0e-33 145.6 208 48.6
C02p29260 Brassica napus HOM05D005065 ORTHO05D005944 4.0e-33 145.6 208 48.6
BolC2t08977H Brassica oleracea HOM05D005065 ORTHO05D005944 4.0e-33 145.6 208 48.6
BcaC08g46641 Brassica carinata HOM05D005065 ORTHO05D005944 7.5e-32 141.4 213 45.1
C06p46070 Brassica napus HOM05D005065 ORTHO05D005944 2.9e-31 139.4 213 44.6
Aa31LG7G6580 Aethionema arabicum HOM05D005065 ORTHO05D005944 3.7e-31 139.0 211 44.1
BcaB05g24697 Brassica carinata HOM05D005065 ORTHO05D005944 6.4e-31 138.3 209 49.3
THA.LOC104809741 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 6.4e-31 138.3 195 46.7
BolC6t39660H Brassica oleracea HOM05D005065 ORTHO05D005944 1.4e-30 137.1 194 45.4
A02p17610 Brassica napus HOM05D005065 ORTHO05D005944 2.4e-30 136.3 212 45.8
BraA02t06807Z Brassica rapa HOM05D005065 ORTHO05D005944 2.4e-30 136.3 212 45.8
Aa31LG4G8650 Aethionema arabicum HOM05D005065 ORTHO05D005944 1.6e-26 123.6 193 45.6
Lsat_1_v5_gn_1_10621 Lactuca sativa HOM05D005065 ORTHO05D005944 1.2e-24 117.5 133 48.1
Duzib211G0507 Durio zibethinus HOM05D005065 ORTHO05D005944 5.8e-24 115.2 171 49.1
Cfa013844 Carpinus fangiana HOM05D005065 ORTHO05D005944 1.6e-21 107.1 189 42.3
Dinv41716 Davidia involucrata HOM05D005065 ORTHO05D005944 3.5e-21 105.9 139 46.0
Potri.019G082866 Populus trichocarpa HOM05D005065 ORTHO05D005944 7.8e-21 104.8 136 46.3
Haze_22517 Corylus avellana HOM05D005065 ORTHO05D005944 1.0e-20 104.4 192 42.7
Peaxi162Scf00268g00105 Petunia axillaris HOM05D005065 ORTHO05D005944 1.7e-20 103.6 193 40.9
Duzib177G1167 Durio zibethinus HOM05D005065 ORTHO05D005944 8.6e-20 101.3 166 45.8
Thecc.08G184600 Theobroma cacao HOM05D005065 ORTHO05D005944 8.6e-20 101.3 193 42.0
Actinidia23336 Actinidia chinensis HOM05D005065 ORTHO05D005944 1.1e-19 100.9 151 45.7
HanXRQChr04g0107491 Helianthus annuus HOM05D005065 ORTHO05D005944 1.9e-19 100.1 162 43.2
Lalb_Chr06g0162001 Lupinus albus HOM05D005065 ORTHO05D005944 2.5e-19 99.8 175 38.9
VMungo0720G1099 Vigna mungo HOM05D005065 ORTHO05D005944 3.3e-19 99.4 162 42.6
Actinidia02576 Actinidia chinensis HOM05D005065 ORTHO05D005944 4.3e-19 99.0 159 44.0
CiPaw.08G058800 Carya illinoinensis HOM05D005065 ORTHO05D005944 4.3e-19 99.0 138 47.1
Glyma.10G217400 Glycine max HOM05D005065 ORTHO05D005944 4.3e-19 99.0 166 45.2
Manes.18G101500 Manihot esculenta HOM05D005065 ORTHO05D005944 4.3e-19 99.0 168 42.9
CiPaw.07G160300 Carya illinoinensis HOM05D005065 ORTHO05D005944 5.6e-19 98.6 171 42.1
Gohir.D05G277400 Gossypium hirsutum HOM05D005065 ORTHO05D005944 5.6e-19 98.6 140 44.3
Hma1.2p1_0937F.1_g239030 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 9.6e-19 97.8 169 41.4
Gorai.009G290400 Gossypium raimondii HOM05D005065 ORTHO05D005944 1.2e-18 97.4 140 44.3
Eucgr.F02608 Eucalyptus grandis HOM05D005065 ORTHO05D005944 1.6e-18 97.1 163 42.9
Lalb_Chr21g0305721 Lupinus albus HOM05D005065 ORTHO05D005944 1.6e-18 97.1 189 39.2
Gohir.A05G275300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 2.1e-18 96.7 152 42.8
MSTRG.25443 Avicennia marina HOM05D005065 ORTHO05D005944 2.8e-18 96.3 158 43.7
Phvul.007G088700 Phaseolus vulgaris HOM05D005065 ORTHO05D005944 2.8e-18 96.3 185 40.5
Potri.013G111700 Populus trichocarpa HOM05D005065 ORTHO05D005944 2.8e-18 96.3 133 42.9
A07p38140 Brassica napus HOM05D005065 ORTHO05D005944 3.6e-18 95.9 174 40.8
Gohir.A13G121100 Gossypium hirsutum HOM05D005065 ORTHO05D005944 3.6e-18 95.9 166 41.6
Dinv15081 Davidia involucrata HOM05D005065 ORTHO05D005944 4.7e-18 95.5 161 42.2
MSTRG.22454 Avicennia marina HOM05D005065 ORTHO05D005944 1.1e-17 94.4 174 40.8
Rhsim06G0094100 Rhododendron simsii HOM05D005065 ORTHO05D005944 1.1e-17 94.4 181 38.7
Ciclev10002433m.g Citrus clementina HOM05D005065 ORTHO05D005944 1.4e-17 94.0 172 43.0
Lalb_Chr03g0036131 Lupinus albus HOM05D005065 ORTHO05D005944 1.4e-17 94.0 174 38.5
Lsat_1_v5_gn_6_109661 Lactuca sativa HOM05D005065 ORTHO05D005944 1.8e-17 93.6 157 40.8
Manes.02G192500 Manihot esculenta HOM05D005065 ORTHO05D005944 2.4e-17 93.2 171 40.9
Cpa.g.sc66.33 Carica papaya HOM05D005065 ORTHO05D005944 3.1e-17 92.8 202 40.1
Gohir.D13G125200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 4.0e-17 92.4 161 41.6
Gorai.013G140100 Gossypium raimondii HOM05D005065 ORTHO05D005944 4.0e-17 92.4 161 41.6
MSTRG.1526 Avicennia marina HOM05D005065 ORTHO05D005944 5.2e-17 92.0 172 41.9
Cc00_g13630 Coffea canephora HOM05D005065 ORTHO05D005944 6.9e-17 91.7 182 40.1
Glyma.20G174600 Glycine max HOM05D005065 ORTHO05D005944 6.9e-17 91.7 161 39.1
SalBow7G0321 Salvia bowleyana HOM05D005065 ORTHO05D005944 6.9e-17 91.7 149 44.3
Atru.chr13.1737 Acer truncatum HOM05D005065 ORTHO05D005944 8.9e-17 91.3 166 41.6
Hma1.2p1_0060F.1_g032900 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 8.9e-17 91.3 178 37.1
Lalb_Chr01g0010191 Lupinus albus HOM05D005065 ORTHO05D005944 8.9e-17 91.3 163 41.7
Ca_10622_v3 Cicer arietinum L. HOM05D005065 ORTHO05D005944 1.2e-16 90.9 172 37.2
MELO3C008125.2 Cucumis melo HOM05D005065 ORTHO05D005944 1.2e-16 90.9 151 43.7
Oeu017883.1 Olea europaea HOM05D005065 ORTHO05D005944 1.5e-16 90.5 155 40.6
Sopen11g009740 Solanum pennellii HOM05D005065 ORTHO05D005944 1.5e-16 90.5 157 42.7
ClCG11G008090 Citrullus lanatus HOM05D005065 ORTHO05D005944 3.4e-16 89.4 151 41.1
Lalb_Chr02g0141751 Lupinus albus HOM05D005065 ORTHO05D005944 5.8e-16 88.6 172 38.4
Solyc11g018710.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 7.6e-16 88.2 157 41.4
FAN15G3279 Fragaria x ananassa HOM05D005065 ORTHO05D005944 9.9e-16 87.8 191 37.7
PGSC0003DMG400014033 Solanum tuberosum HOM05D005065 ORTHO05D005944 9.9e-16 87.8 203 38.4
RcHm_v2.0_Chr6g0270871 Rosa chinensis HOM05D005065 ORTHO05D005944 2.2e-15 86.7 186 34.9
Migut.C01259 Erythranthe guttata HOM05D005065 ORTHO05D005944 4.9e-15 85.5 184 37.5
Prupe.8G058900 Prunus persica HOM05D005065 ORTHO05D005944 4.9e-15 85.5 162 40.1
Lalb_Chr19g0129461 Lupinus albus HOM05D005065 ORTHO05D005944 6.4e-15 85.1 164 39.0
Peaxi162Scf01013g00001 Petunia axillaris HOM05D005065 ORTHO05D005944 6.4e-15 85.1 162 41.4
Solyc06g065340.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 6.4e-15 85.1 146 41.1
Nn5g27677 Nelumbo nucifera HOM05D005065 ORTHO05D005944 8.4e-15 84.7 145 41.4
HanXRQChr05g0150531 Helianthus annuus HOM05D005065 ORTHO05D005944 1.1e-14 84.3 155 40.6
TWI60G1480 Tripterygium wilfordii HOM05D005065 ORTHO05D005944 2.4e-14 83.2 193 35.8
Oeu021210.1 Olea europaea HOM05D005065 ORTHO05D005944 3.2e-14 82.8 170 40.6
Oeu029996.1 Olea europaea HOM05D005065 ORTHO05D005944 7.1e-14 81.6 173 41.0
QL02p033454 Quercus lobata HOM05D005065 ORTHO05D005944 7.1e-14 81.6 193 35.8
Oeu025521.1 Olea europaea HOM05D005065 ORTHO05D005944 1.2e-13 80.9 155 43.2
CAN.G199.8 Capsicum annuum HOM05D005065 ORTHO05D005944 2.1e-13 80.1 158 38.0
PGR042G0986 Punica granatum HOM05D005065 ORTHO05D005944 2.1e-13 80.1 157 43.9
Sopen06g023830 Solanum pennellii HOM05D005065 ORTHO05D005944 2.7e-13 79.7 147 39.5
CSS0016137 Camellia sinensis var. sinensis HOM05D005065 ORTHO05D005944 3.5e-13 79.3 157 40.8
Sed0021334 Sechium edule HOM05D005065 ORTHO05D005944 4.6e-13 79.0 147 38.1
PGSC0003DMG400026113 Solanum tuberosum HOM05D005065 ORTHO05D005944 6.0e-13 78.6 177 36.7
DCAR_011533 Daucus carota HOM05D005065 ORTHO05D005944 7.8e-13 78.2 186 36.0
Eucgr.F04121 Eucalyptus grandis HOM05D005065 ORTHO05D005944 1.3e-12 77.4 134 38.1
Aqoxy5G02380 Aquilegia oxysepala HOM05D005065 ORTHO05D005944 3.0e-12 76.3 161 35.4
Gohir.A09G116200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 3.0e-12 76.3 172 34.9
Nn1g08370 Nelumbo nucifera HOM05D005065 ORTHO05D005944 3.0e-12 76.3 176 35.2
Gohir.D09G113300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 6.6e-12 75.1 172 34.9
Lj5g0001381 Lotus japonicus HOM05D005065 ORTHO05D005944 6.6e-12 75.1 166 35.5
PSO782G1863 Papaver somniferum HOM05D005065 ORTHO05D005944 1.9e-11 73.6 187 33.7
Psat6g187880 Pisum sativum HOM05D005065 ORTHO05D005944 2.5e-11 73.2 183 36.1
SGA_v2.0_scaffold149G36582 Striga asiatica HOM05D005065 ORTHO05D005944 4.3e-11 72.4 168 38.7
Sabra13G0095100 Salix brachista HOM05D005065 ORTHO05D005944 5.6e-11 72.0 139 41.0
Gorai.006G130800 Gossypium raimondii HOM05D005065 ORTHO05D005944 1.3e-10 70.9 172 33.7
TPR.G8826 Trifolium pratense HOM05D005065 ORTHO05D005944 1.3e-10 70.9 176 34.7
TAR624G0039 Trochodendron aralioides HOM05D005065 ORTHO05D005944 1.3e-10 70.9 143 34.3
PGR102G0471 Punica granatum HOM05D005065 ORTHO05D005944 2.1e-10 70.1 183 33.9
Sabra19G0094300 Salix brachista HOM05D005065 ORTHO05D005944 2.8e-10 69.7 112 44.6
Nitab4.5_0009211g0010 Nicotiana tabacum HOM05D005065 ORTHO05D005944 1.4e-09 67.4 145 37.9
SGA_v2.0_scaffold24G10554 Striga asiatica HOM05D005065 ORTHO05D005944 1.4e-09 67.4 159 37.1
MD05G1042300 Malus domestica HOM05D005065 ORTHO05D005944 1.8e-09 67.0 181 35.4
Ah.05g178140 Amaranthus hybridus HOM05D005065 ORTHO05D005944 4.0e-09 65.9 172 36.6
HPP92_009270 Vanilla planifolia HOM05D005065 ORTHO05D005944 9.0e-09 64.7 186 34.4
Nitab4.5_0000277g0040 Nicotiana tabacum HOM05D005065 ORTHO05D005944 1.2e-08 64.3 144 37.5
FvH4_2g11630 Fragaria vesca HOM05D005065 ORTHO05D005944 2.0e-08 63.5 114 42.1
FAN24G2022 Fragaria x ananassa HOM05D005065 ORTHO05D005944 2.0e-08 63.5 114 42.1
FAN20G1873 Fragaria x ananassa HOM05D005065 ORTHO05D005944 3.4e-08 62.8 114 42.1
Rhsim11G0058500 Rhododendron simsii HOM05D005065 ORTHO05D005944 4.5e-08 62.4 135 34.8
CDE06G2798 Ceratophyllum demersum HOM05D005065 ORTHO05D005944 5.8e-08 62.0 113 42.5
EL10Ac1g00090 Beta vulgaris HOM05D005065 ORTHO05D005944 7.6e-08 61.6 187 33.2
MBI09_g14012_MAGBIO Magnolia biondii HOM05D005065 ORTHO05D005944 2.2e-07 60.1 163 33.7
SGA_v2.0_scaffold118G32491 Striga asiatica HOM05D005065 ORTHO05D005944 8.4e-07 58.2 127 37.8
SEGI_38060 Sequoiadendron giganteum HOM05D062780 ORTHO05D385446 1.4e-06 57.4 171 32.2
HPP92_006868 Vanilla planifolia HOM05D064031 ORTHO05D005944 1.9e-06 57.0 155 31.6
HPP92_006851 Vanilla planifolia HOM05D064031 ORTHO05D005944 7.1e-06 55.1 155 31.6


User provided reference genes

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