Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g20090 Schrenkiella parvula HOM05D004912 ORTHO05D006144 2.9e-208 728.4 392 100.0
BcaB03g14195 Brassica carinata HOM05D004912 ORTHO05D006144 5.6e-143 511.5 397 73.8
A07p14290 Brassica napus HOM05D004912 ORTHO05D006144 7.6e-140 501.1 397 71.5
BraA07t29186Z Brassica rapa HOM05D004912 ORTHO05D006144 7.6e-140 501.1 397 71.5
BcaC06g34978 Brassica carinata HOM05D004912 ORTHO05D006144 2.2e-139 499.6 396 71.2
C07p21010 Brassica napus HOM05D004912 ORTHO05D006144 1.1e-138 497.3 396 70.7
BolC7t42633H Brassica oleracea HOM05D004912 ORTHO05D006144 1.4e-138 496.9 396 71.0
CARHR022970 Cardamine hirsuta HOM05D004912 ORTHO05D006144 1.0e-136 490.7 402 71.6
AT1G22600 Arabidopsis thaliana HOM05D004912 ORTHO05D006144 9.9e-132 474.2 394 70.1
Carub.0001s2211 Capsella rubella HOM05D004912 ORTHO05D006144 3.1e-125 452.6 395 67.8
AL1G36130 Arabidopsis lyrata HOM05D004912 ORTHO05D006144 6.0e-121 438.3 391 65.2
Thhalv10008247m.g Eutrema salsugineum HOM05D004912 ORTHO05D006144 5.3e-101 372.1 393 58.3
Aa31LG4G8550 Aethionema arabicum HOM05D004912 ORTHO05D006144 2.1e-89 333.6 444 50.2
Carub.0002s1888 Capsella rubella HOM05D004912 ORTHO05D006144 4.5e-84 315.8 478 46.2
Thhalv10018523m.g Eutrema salsugineum HOM05D004912 ORTHO05D006144 2.6e-79 300.1 472 44.5
A02p17660 Brassica napus HOM05D004912 ORTHO05D006144 2.2e-78 297.0 476 44.7
BraA02t06813Z Brassica rapa HOM05D004912 ORTHO05D006144 2.2e-78 297.0 476 44.7
BcaC03g15331 Brassica carinata HOM05D004912 ORTHO05D006144 1.6e-76 290.8 476 43.7
C02p29360 Brassica napus HOM05D004912 ORTHO05D006144 1.6e-76 290.8 476 43.7
BolC2t08987H Brassica oleracea HOM05D004912 ORTHO05D006144 1.6e-76 290.8 476 43.7
Sp5g27160 Schrenkiella parvula HOM05D004912 ORTHO05D006144 5.9e-76 288.9 478 43.5
AL2G31720 Arabidopsis lyrata HOM05D004912 ORTHO05D006144 5.5e-74 282.3 485 42.5
AT1G72100 Arabidopsis thaliana HOM05D004912 ORTHO05D006144 4.0e-72 276.2 497 41.4
BcaB05g24704 Brassica carinata HOM05D004912 ORTHO05D006144 1.3e-70 271.2 454 42.3
CARHR064910 Cardamine hirsuta HOM05D004912 ORTHO05D006144 2.2e-70 270.4 494 40.9
THA.LOC104800129 Tarenaya hassleriana HOM05D004912 ORTHO05D006144 1.2e-63 248.1 513 35.5
Lj3g0019671 Lotus japonicus HOM05D004912 ORTHO05D006144 1.1e-58 231.5 383 39.4
Manes.18G104400 Manihot esculenta HOM05D004912 ORTHO05D006144 1.0e-56 224.9 433 36.7
arahy.Tifrunner.gnm1.ann1.SX2JAI Arachis hypogaea HOM05D004912 ORTHO05D006144 1.2e-55 221.5 436 36.0
arahy.Tifrunner.gnm1.ann1.NID8M3 Arachis hypogaea HOM05D004912 ORTHO05D006144 4.4e-55 219.5 413 37.8
arahy.Tifrunner.gnm1.ann1.Z6QD6J Arachis hypogaea HOM05D004912 ORTHO05D006144 6.4e-54 215.7 435 34.9
Dinv41750 Davidia involucrata HOM05D004912 ORTHO05D006144 7.0e-53 212.2 476 36.3
arahy.Tifrunner.gnm1.ann1.9DDU7S Arachis hypogaea HOM05D004912 ORTHO05D006144 4.6e-52 209.5 417 35.7
COL.COLO4_05030 Corchorus olitorius HOM05D004912 ORTHO05D006144 1.0e-51 208.4 414 37.9
Glyma.12G001600 Glycine max HOM05D004912 ORTHO05D006144 1.3e-51 208.0 389 37.5
VMungo1127G0246 Vigna mungo HOM05D004912 ORTHO05D006144 1.7e-51 207.6 407 36.6
Eucgr.F04115 Eucalyptus grandis HOM05D004912 ORTHO05D006144 5.6e-50 202.6 439 35.1
QL02p026125 Quercus lobata HOM05D004912 ORTHO05D006144 1.2e-49 201.4 487 32.6
Gohir.D13G123600 Gossypium hirsutum HOM05D004912 ORTHO05D006144 4.7e-49 199.5 492 32.7
Atru.chr13.2352 Acer truncatum HOM05D004912 ORTHO05D006144 1.2e-47 194.9 449 33.6
Ca_27514_v3 Cicer arietinum L. HOM05D004912 ORTHO05D006144 7.5e-47 192.2 427 36.3
Ciclev10001073m.g Citrus clementina HOM05D004912 ORTHO05D006144 9.8e-47 191.8 470 32.8
HanXRQChr09g0260131 Helianthus annuus HOM05D004912 ORTHO05D006144 1.3e-46 191.4 463 32.8
EL10Ac1g00125 Beta vulgaris HOM05D004912 ORTHO05D006144 3.7e-46 189.9 407 37.1
Aa31LG7G6480 Aethionema arabicum HOM05D004912 ORTHO05D006144 4.9e-46 189.5 190 56.3
Cfa012942 Carpinus fangiana HOM05D004912 ORTHO05D006144 8.3e-46 188.7 497 32.0
ClCG11G008550 Citrullus lanatus HOM05D004912 ORTHO05D006144 8.3e-46 188.7 431 35.7
Gohir.A13G119900 Gossypium hirsutum HOM05D004912 ORTHO05D006144 1.1e-45 188.3 500 31.2
Phvul.011G001700 Phaseolus vulgaris HOM05D004912 ORTHO05D006144 4.1e-45 186.4 388 35.3
ClCG08G000690 Citrullus lanatus HOM05D004912 ORTHO05D006144 5.4e-45 186.0 410 36.3
Oeu051787.1 Olea europaea HOM05D004912 ORTHO05D006144 1.2e-44 184.9 404 36.9
Lsat_1_v5_gn_7_21041 Lactuca sativa HOM05D004912 ORTHO05D006144 3.5e-44 183.3 483 31.3
Gorai.013G138700 Gossypium raimondii HOM05D004912 ORTHO05D006144 4.6e-44 183.0 499 31.3
Gohir.D05G275200 Gossypium hirsutum HOM05D004912 ORTHO05D006144 6.0e-44 182.6 431 34.8
Sabra13G0093000 Salix brachista HOM05D004912 ORTHO05D006144 1.3e-43 181.4 471 33.8
Manes.02G197100 Manihot esculenta HOM05D004912 ORTHO05D006144 6.6e-43 179.1 496 32.5
Haze_21297 Corylus avellana HOM05D004912 ORTHO05D006144 1.5e-42 177.9 243 44.4
Lalb_Chr01g0000121 Lupinus albus HOM05D004912 ORTHO05D006144 1.5e-42 177.9 421 33.7
ECA232G1825 Erigeron canadensis HOM05D004912 ORTHO05D006144 1.9e-42 177.6 465 30.3
Actinidia01557 Actinidia chinensis HOM05D004912 ORTHO05D006144 2.5e-42 177.2 492 31.5
MELO3C022195.2 Cucumis melo HOM05D004912 ORTHO05D006144 3.3e-42 176.8 444 34.9
Nn5g27542 Nelumbo nucifera HOM05D004912 ORTHO05D006144 1.2e-41 174.9 540 30.0
Ah.05g178460 Amaranthus hybridus HOM05D004912 ORTHO05D006144 2.1e-41 174.1 425 34.4
Glyma.08G239400 Glycine max HOM05D004912 ORTHO05D006144 8.1e-41 172.2 394 33.2
CiPaw.08G002400 Carya illinoinensis HOM05D004912 ORTHO05D006144 1.4e-40 171.4 496 31.0
Cpa.g.sc66.6 Carica papaya HOM05D004912 ORTHO05D006144 1.8e-40 171.0 203 46.8
PGSC0003DMG400031323 Solanum tuberosum HOM05D004912 ORTHO05D006144 4.0e-40 169.9 448 34.2
CANSAT25G2909 Cannabis sativa HOM05D004912 ORTHO05D006144 6.8e-40 169.1 459 34.2
CDE06G1282 Ceratophyllum demersum HOM05D004912 ORTHO05D006144 8.9e-40 168.7 446 32.1
Peaxi162Scf00154g00016 Petunia axillaris HOM05D004912 ORTHO05D006144 8.9e-40 168.7 464 32.1
CsaV3_5G040180 Cucumis sativus L. HOM05D004912 ORTHO05D006144 2.0e-39 167.5 414 33.8
Cc10_g10040 Coffea canephora HOM05D004912 ORTHO05D006144 3.4e-39 166.8 432 31.7
Hund27105 Selenicereus undatus HOM05D004912 ORTHO05D006144 4.4e-39 166.4 409 32.5
Medtr4g033230 Medicago truncatula HOM05D004912 ORTHO05D006144 9.9e-39 165.2 441 32.9
Medtr4g033265 Medicago truncatula HOM05D004912 ORTHO05D006144 9.9e-39 165.2 441 32.9
SalBow7G4664 Salvia bowleyana HOM05D004912 ORTHO05D006144 1.3e-38 164.9 424 32.5
TWI23G1256 Tripterygium wilfordii HOM05D004912 ORTHO05D006144 1.7e-38 164.5 188 50.5
Oeu059194.1 Olea europaea HOM05D004912 ORTHO05D006144 2.9e-38 163.7 407 33.4
PGR102G1759 Punica granatum HOM05D004912 ORTHO05D006144 3.7e-38 163.3 471 31.0
Lj4A484T8 Lonicera japonica HOM05D004912 ORTHO05D006144 6.4e-38 162.5 193 48.2
AUR62004613 Chenopodium quinoa HOM05D004912 ORTHO05D006144 1.1e-37 161.8 442 33.3
Peaxi162Scf00798g00322 Petunia axillaris HOM05D004912 ORTHO05D006144 1.4e-37 161.4 474 32.1
AUR62022650 Chenopodium quinoa HOM05D004912 ORTHO05D006144 2.4e-37 160.6 472 32.4
Nitab4.5_0006163g0010 Nicotiana tabacum HOM05D004912 ORTHO05D006144 3.2e-37 160.2 478 30.8
GSVIVG01001769001 Vitis vinifera HOM05D004912 ORTHO05D006144 4.1e-37 159.8 374 33.4
Migut.C01310 Erythranthe guttata HOM05D004912 ORTHO05D006144 5.4e-37 159.5 264 38.6
Sopen06g023560 Solanum pennellii HOM05D004912 ORTHO05D006144 3.5e-36 156.8 456 31.4
PGSC0003DMG400031411 Solanum tuberosum HOM05D004912 ORTHO05D006144 1.0e-35 155.2 398 32.7
Nitab4.5_0007332g0020 Nicotiana tabacum HOM05D004912 ORTHO05D006144 2.3e-35 154.1 208 42.3
MBI17_g01791_MAGBIO Magnolia biondii HOM05D004912 ORTHO05D006144 5.1e-35 152.9 258 39.9
Sed0022690 Sechium edule HOM05D004912 ORTHO05D006144 8.6e-35 152.1 451 31.0
Solyc11g022530.3 Solanum lycopersicum HOM05D004912 ORTHO05D006144 1.5e-34 151.4 408 32.4
SGA_v2.0_scaffold118G32511 Striga asiatica HOM05D004912 ORTHO05D006144 1.5e-34 151.4 475 31.4
Sopen11g011640 Solanum pennellii HOM05D004912 ORTHO05D006144 4.3e-34 149.8 408 31.9
unitig_748.g7733 Utricularia gibba HOM05D004912 ORTHO05D006144 4.3e-34 149.8 386 31.3
Prupe.1G554000 Prunus persica HOM05D004912 ORTHO05D006144 7.3e-34 149.1 472 30.5
Solyc06g065050.2 Solanum lycopersicum HOM05D004912 ORTHO05D006144 9.5e-34 148.7 455 30.5
Nitab4.5_0005750g0010 Nicotiana tabacum HOM05D004912 ORTHO05D006144 1.2e-33 148.3 476 30.0
Psat7g146280 Pisum sativum HOM05D004912 ORTHO05D006144 1.1e-32 145.2 404 32.2
Rhsim12G0007100 Rhododendron simsii HOM05D004912 ORTHO05D006144 1.4e-32 144.8 349 33.5
unitig_32.g11185 Utricularia gibba HOM05D004912 ORTHO05D006144 1.8e-32 144.4 395 32.9
TAR376G1051 Trochodendron aralioides HOM05D004912 ORTHO05D006144 2.4e-32 144.1 194 44.3
HanXRQChr11g0326311 Helianthus annuus HOM05D004912 ORTHO05D006144 3.1e-32 143.7 362 29.8
GSVIVG01001772001 Vitis vinifera HOM05D004912 ORTHO05D006144 5.2e-32 142.9 206 40.8
CAN.G308.42 Capsicum annuum HOM05D004912 ORTHO05D006144 4.4e-31 139.8 470 31.1
FAN04G2666 Fragaria x ananassa HOM05D004912 ORTHO05D006144 4.4e-31 139.8 548 28.1
Nitab4.5_0001378g0010 Nicotiana tabacum HOM05D004912 ORTHO05D006144 9.9e-31 138.7 459 29.2
DCAR_014078 Daucus carota HOM05D004912 ORTHO05D006144 1.3e-30 138.3 484 27.9
MD15G1407700 Malus domestica HOM05D004912 ORTHO05D006144 1.3e-30 138.3 478 28.2
FvH4_5g31970 Fragaria vesca HOM05D004912 ORTHO05D006144 2.9e-30 137.1 545 28.3
Rhsim11G0053200 Rhododendron simsii HOM05D004912 ORTHO05D006144 4.9e-30 136.3 275 34.2
TAR628G1727 Trochodendron aralioides HOM05D004912 ORTHO05D006144 6.4e-30 136.0 365 31.0
Zm00001eb422690 Zea mays HOM05D004912 ORTHO05D006144 8.4e-30 135.6 216 40.3
TPR.G312 Trifolium pratense HOM05D004912 ORTHO05D006144 1.9e-29 134.4 318 32.4
Aqoxy6G00063 Aquilegia oxysepala HOM05D004912 ORTHO05D006144 1.2e-28 131.7 199 41.7
DCAR_024339 Daucus carota HOM05D004912 ORTHO05D006144 2.7e-28 130.6 293 32.1
FAN18G2258 Fragaria x ananassa HOM05D004912 ORTHO05D006144 6.0e-28 129.4 545 27.7
CSS0047311 Camellia sinensis var. sinensis HOM05D004912 ORTHO05D006144 2.3e-27 127.5 145 49.0
RcHm_v2.0_Chr7g0227991 Rosa chinensis HOM05D004912 ORTHO05D006144 3.9e-27 126.7 548 26.6
HPP92_005696 Vanilla planifolia HOM05D004912 ORTHO05D006144 6.6e-27 125.9 237 36.7
Sc01g0001930 Simmondsia chinensis HOM05D004912 ORTHO05D006144 4.3e-26 123.2 330 32.7
PGSC0003DMG400031324 Solanum tuberosum HOM05D004912 ORTHO05D006144 9.6e-26 122.1 249 35.7
Lalb_Chr19g0140481 Lupinus albus HOM05D004912 ORTHO05D006144 9.0e-24 115.5 344 29.9
Migut.N03366 Erythranthe guttata HOM05D004912 ORTHO05D006144 3.4e-23 113.6 276 35.1
vmacro00991 Vaccinium macrocarpon HOM05D004912 ORTHO05D006144 2.2e-22 110.9 521 28.2
Hma1.2p1_0009F.1_g005990 Hydrangea macrophylla HOM05D004912 ORTHO05D006144 3.8e-22 110.2 323 27.6
CAN.G635.17 Capsicum annuum HOM05D004912 ORTHO05D006144 1.1e-21 108.6 361 28.8
ATR1134G033 Amborella trichopoda HOM05D004912 ORTHO05D006144 1.9e-21 107.8 250 33.6
BolC6t39676H Brassica oleracea HOM05D005687 ORTHO05D007098 4.2e-21 106.7 139 48.9
BraA07t31389Z Brassica rapa HOM05D005687 ORTHO05D007098 3.0e-19 100.5 135 48.1
SEGI_22716 Sequoiadendron giganteum HOM05D004912 ORTHO05D006144 3.9e-19 100.1 264 31.4
Pp3c4_23110 Physcomitrium patens HOM05D004395 ORTHO05D005234 9.6e-18 95.5 183 38.8
SGA_v2.0_scaffold19G08943 Striga asiatica HOM05D004912 ORTHO05D006144 1.3e-17 95.1 392 28.1
Lsat_1_v5_gn_5_118600 Lactuca sativa HOM05D004912 ORTHO05D006144 1.4e-16 91.7 226 32.3
Lsat_1_v5_gn_1_26081 Lactuca sativa HOM05D004912 ORTHO05D006144 1.8e-16 91.3 264 32.6
Mapoly0029s0129 Marchantia polymorpha HOM05D004395 ORTHO05D005234 1.2e-15 88.6 273 28.2
SMO118G0438 Selaginella moellendorffii HOM05D004395 ORTHO05D005234 1.5e-15 88.2 255 30.2
AagrBONN_evm.TU.Sc2ySwM_228.1722 Anthoceros agrestis HOM05D004395 ORTHO05D005234 5.8e-15 86.3 190 34.7
ECA247G4121 Erigeron canadensis HOM05D004912 ORTHO05D006144 6.4e-14 82.8 350 28.0
Migut.C01311 Erythranthe guttata HOM05D004912 ORTHO05D006144 4.2e-13 80.1 175 38.3
CDE08G1543 Ceratophyllum demersum HOM05D004912 ORTHO05D006144 5.4e-13 79.7 325 27.1
Psat7g146200 Pisum sativum HOM05D004912 ORTHO05D006144 1.8e-11 74.7 106 41.5
HPP92_005686 Vanilla planifolia HOM05D004912 ORTHO05D006144 6.7e-11 72.8 115 38.3
PGR042G2891 Punica granatum HOM05D004912 ORTHO05D006144 5.6e-10 69.7 192 29.7
Pp3c4_18020 Physcomitrium patens HOM05D004395 ORTHO05D005234 2.1e-09 67.8 176 27.8
TAR628G1733 Trochodendron aralioides HOM05D004912 ORTHO05D006144 2.1e-09 67.8 110 40.9
Mapoly0073s0092 Marchantia polymorpha HOM05D004395 ORTHO05D005234 1.4e-08 65.1 228 30.7
Lalb_Chr19g0140471 Lupinus albus HOM05D004912 ORTHO05D006144 3.1e-08 63.9 103 41.7
CBR_g50787 Chara braunii HOM05D004395 ORTHO05D005234 5.3e-08 63.2 196 28.1
Pp3c3_12260 Physcomitrium patens HOM05D004395 ORTHO05D005234 3.4e-07 60.5 200 29.0
Pp3c20_10750 Physcomitrium patens HOM05D004395 ORTHO05D005234 2.2e-06 57.8 211 27.5
GSVIVG01001776001 Vitis vinifera HOM05D004912 ORTHO05D006144 2.9e-06 57.4 66 42.4
AagrBONN_evm.TU.Sc2ySwM_344.4364 Anthoceros agrestis HOM05D004395 ORTHO05D005234 4.9e-06 56.6 188 27.1
SMO367G0059 Selaginella moellendorffii HOM05D004395 ORTHO05D005234 6.4e-06 56.2 187 28.3
A09p42160 Brassica napus HOM05D028933 ORTHO05D028295 8.4e-06 55.8 32 81.2
BraA09t39702Z Brassica rapa HOM05D028933 ORTHO05D028295 8.4e-06 55.8 32 81.2
Eucgr.K03534 Eucalyptus grandis HOM05D004395 ORTHO05D005234 8.4e-06 55.8 204 26.5


User provided reference genes

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