Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g19640 Schrenkiella parvula HOM05D007703 ORTHO05D009731 2.6e-36 154.8 77 100.0
Thhalv10009245m.g Eutrema salsugineum HOM05D007703 ORTHO05D009731 4.6e-33 144.1 77 89.6
CARHR022490 Cardamine hirsuta HOM05D007703 ORTHO05D009731 1.3e-30 136.0 77 85.7
BcaC05g26138 Brassica carinata HOM05D007703 ORTHO05D009731 3.1e-29 131.3 75 85.3
C05p21240 Brassica napus HOM05D007703 ORTHO05D009731 3.1e-29 131.3 75 85.3
BolC5t30820H Brassica oleracea HOM05D007703 ORTHO05D009731 3.1e-29 131.3 75 85.3
BcaB07g32233 Brassica carinata HOM05D007703 ORTHO05D009731 3.4e-28 127.9 76 85.5
AT1G22140 Arabidopsis thaliana HOM05D007703 ORTHO05D009731 1.0e-27 126.3 77 84.4
BraA09t39737Z Brassica rapa HOM05D007703 ORTHO05D009731 2.2e-27 125.2 77 83.1
AL1G35580 Arabidopsis lyrata HOM05D007703 ORTHO05D009731 3.8e-27 124.4 77 81.8
A09p42620 Brassica napus HOM05D007703 ORTHO05D009731 3.8e-27 124.4 77 83.1
Carub.0001s2169 Capsella rubella HOM05D007703 ORTHO05D009731 4.2e-26 120.9 77 80.5
Aa31LG7G6100 Aethionema arabicum HOM05D007703 ORTHO05D009731 1.2e-25 119.4 77 77.9
Gohir.D06G040000 Gossypium hirsutum HOM05D007703 ORTHO05D009731 1.1e-21 106.3 77 67.5
Gorai.010G044500 Gossypium raimondii HOM05D007703 ORTHO05D009731 1.1e-21 106.3 77 67.5
Gohir.A06G038300 Gossypium hirsutum HOM05D007703 ORTHO05D009731 1.4e-21 105.9 77 68.8
COL.COLO4_16476 Corchorus olitorius HOM05D007703 ORTHO05D009731 2.0e-20 102.1 77 68.8
Atru.chr13.1271 Acer truncatum HOM05D007703 ORTHO05D009731 7.6e-20 100.1 77 63.6
TWI56G0976 Tripterygium wilfordii HOM05D007703 ORTHO05D009731 1.0e-19 99.8 74 66.2
CiPaw.05G232600 Carya illinoinensis HOM05D007703 ORTHO05D009731 1.7e-19 99.0 78 64.1
Potri.005G167200 Populus trichocarpa HOM05D007703 ORTHO05D009731 2.2e-19 98.6 76 67.1
Duzib116G0261 Durio zibethinus HOM05D007703 ORTHO05D009731 3.8e-19 97.8 77 66.2
Thecc.08G112500 Theobroma cacao HOM05D007703 ORTHO05D009731 5.0e-19 97.4 77 66.2
Eucgr.F00482 Eucalyptus grandis HOM05D007703 ORTHO05D009731 6.5e-19 97.1 77 64.9
Ciclev10003047m.g Citrus clementina HOM05D007703 ORTHO05D009731 8.5e-19 96.7 75 65.3
Psat0s3920g0040 Pisum sativum HOM05D007703 ORTHO05D009731 8.5e-19 96.7 78 65.4
GSVIVG01008983001 Vitis vinifera HOM05D007703 ORTHO05D009731 8.5e-19 96.7 78 62.8
QL12p035855 Quercus lobata HOM05D007703 ORTHO05D009731 1.1e-18 96.3 76 65.8
Cpa.g.sc66.97 Carica papaya HOM05D007703 ORTHO05D009731 3.2e-18 94.7 77 59.7
Medtr5g061840 Medicago truncatula HOM05D007703 ORTHO05D009731 3.2e-18 94.7 74 63.5
Sed0012287 Sechium edule HOM05D007703 ORTHO05D009731 3.2e-18 94.7 81 63.0
Manes.02G156200 Manihot esculenta HOM05D007703 ORTHO05D009731 4.2e-18 94.4 78 62.8
Sabra05G0127000 Salix brachista HOM05D007703 ORTHO05D009731 9.3e-18 93.2 69 65.2
CsaV3_5G023730 Cucumis sativus L. HOM05D007703 ORTHO05D009731 1.2e-17 92.8 81 59.3
FvH4_5g38090 Fragaria vesca HOM05D007703 ORTHO05D009731 1.2e-17 92.8 76 63.2
TPR.G1060 Trifolium pratense HOM05D007703 ORTHO05D009731 1.2e-17 92.8 78 61.5
arahy.Tifrunner.gnm1.ann1.0YA8SQ Arachis hypogaea HOM05D007703 ORTHO05D009731 1.6e-17 92.4 82 58.5
arahy.Tifrunner.gnm1.ann1.DJB4SG Arachis hypogaea HOM05D007703 ORTHO05D009731 1.6e-17 92.4 82 58.5
Phvul.008G170600 Phaseolus vulgaris HOM05D007703 ORTHO05D009731 2.1e-17 92.0 77 55.8
Glyma.13G087000 Glycine max HOM05D007703 ORTHO05D009731 2.7e-17 91.7 79 59.5
Nitab4.5_0002566g0010 Nicotiana tabacum HOM05D007703 ORTHO05D009731 2.7e-17 91.7 75 65.3
PGR042G2694 Punica granatum HOM05D007703 ORTHO05D009731 3.6e-17 91.3 77 59.7
RcHm_v2.0_Chr7g0240051 Rosa chinensis HOM05D007703 ORTHO05D009731 4.6e-17 90.9 76 65.8
Aqoxy6G00561 Aquilegia oxysepala HOM05D007703 ORTHO05D009731 6.1e-17 90.5 80 58.8
Ca_05260_v3 Cicer arietinum L. HOM05D007703 ORTHO05D009731 6.1e-17 90.5 77 61.0
FAN13G1213 Fragaria x ananassa HOM05D007703 ORTHO05D009731 6.1e-17 90.5 76 61.8
Lalb_Chr04g0253231 Lupinus albus HOM05D007703 ORTHO05D009731 6.1e-17 90.5 79 59.5
Prupe.1G511400 Prunus persica HOM05D007703 ORTHO05D009731 6.1e-17 90.5 75 64.0
Sed0022194 Sechium edule HOM05D007703 ORTHO05D009731 6.1e-17 90.5 77 61.0
MELO3C022803.2 Cucumis melo HOM05D007703 ORTHO05D009731 7.9e-17 90.1 80 58.8
FAN04G3187 Fragaria x ananassa HOM05D007703 ORTHO05D009731 7.9e-17 90.1 76 61.8
Sopen12g029570 Solanum pennellii HOM05D007703 ORTHO05D009731 7.9e-17 90.1 72 61.1
Hma1.2p1_0120F.1_g057000 Hydrangea macrophylla HOM05D007703 ORTHO05D009731 1.0e-16 89.7 57 75.4
MSTRG.24946 Avicennia marina HOM05D007703 ORTHO05D009731 2.3e-16 88.6 81 56.8
SalBow7G3803 Salvia bowleyana HOM05D007703 ORTHO05D009731 3.0e-16 88.2 80 58.8
CANSAT25G3270 Cannabis sativa HOM05D007703 ORTHO05D009731 5.1e-16 87.4 85 55.3
Solyc12g056910.2 Solanum lycopersicum HOM05D007703 ORTHO05D009731 5.1e-16 87.4 72 59.7
Glyma.14G169200 Glycine max HOM05D007703 ORTHO05D009731 6.7e-16 87.0 81 56.8
Sc20g0003040 Simmondsia chinensis HOM05D007703 ORTHO05D009731 6.7e-16 87.0 78 56.4
PGSC0003DMG400008548 Solanum tuberosum HOM05D007703 ORTHO05D009731 6.7e-16 87.0 75 57.3
Lj1g0023708 Lotus japonicus HOM05D007703 ORTHO05D009731 8.7e-16 86.7 74 59.5
Nitab4.5_0000425g0040 Nicotiana tabacum HOM05D007703 ORTHO05D009731 8.7e-16 86.7 75 60.0
AUR62034365 Chenopodium quinoa HOM05D007703 ORTHO05D009731 1.1e-15 86.3 74 56.8
AUR62022343 Chenopodium quinoa HOM05D007703 ORTHO05D009731 1.5e-15 85.9 73 57.5
TAR628G1160 Trochodendron aralioides HOM05D007703 ORTHO05D009731 2.5e-15 85.1 80 57.5
Peaxi162Scf00160g01521 Petunia axillaris HOM05D007703 ORTHO05D009731 4.3e-15 84.3 76 60.5
ECA232G3100 Erigeron canadensis HOM05D007703 ORTHO05D009731 7.4e-15 83.6 70 58.6
Pp3c13_8980 Physcomitrium patens HOM05D007703 ORTHO05D009731 7.4e-15 83.6 75 58.7
CDE10G0679 Ceratophyllum demersum HOM05D007703 ORTHO05D009731 9.7e-15 83.2 77 55.8
Mapoly0023s0123 Marchantia polymorpha HOM05D007703 ORTHO05D009731 9.7e-15 83.2 54 72.2
Nn1g05271 Nelumbo nucifera HOM05D007703 ORTHO05D009731 1.6e-14 82.4 75 56.0
SEGI_17524 Sequoiadendron giganteum HOM05D007703 ORTHO05D009731 1.6e-14 82.4 73 63.0
HanXRQChr05g0144121 Helianthus annuus HOM05D007703 ORTHO05D009731 2.8e-14 81.6 61 63.9
Hund26653 Selenicereus undatus HOM05D007703 ORTHO05D009731 2.8e-14 81.6 79 57.0
Lsat_1_v5_gn_9_44720 Lactuca sativa HOM05D007703 ORTHO05D009731 8.2e-14 80.1 70 55.7
PSO133G0107 Papaver somniferum HOM05D007703 ORTHO05D009731 8.2e-14 80.1 59 62.7
Zm00001eb018670 Zea mays HOM05D007703 ORTHO05D009731 8.2e-14 80.1 81 53.1
CAN.G144.17 Capsicum annuum HOM05D007703 ORTHO05D009731 1.4e-13 79.3 50 74.0
ClCG03G008950 Citrullus lanatus HOM05D007703 ORTHO05D009731 1.4e-13 79.3 122 42.6
Os03g0385301 Oryza sativa ssp. japonica HOM05D007703 ORTHO05D009731 1.4e-13 79.3 79 54.4
EL10Ac1g01693 Beta vulgaris HOM05D007703 ORTHO05D009731 1.8e-13 79.0 70 57.1
vmacro21226 Vaccinium macrocarpon HOM05D007703 ORTHO05D009731 2.4e-13 78.6 63 66.7
HPP92_019111 Vanilla planifolia HOM05D007703 ORTHO05D009731 2.4e-13 78.6 72 54.2
Cc10_g05880 Coffea canephora HOM05D007703 ORTHO05D009731 9.1e-13 76.6 83 54.2
SGA_v2.0_scaffold48G18018 Striga asiatica HOM05D007703 ORTHO05D009731 2.0e-12 75.5 101 46.5
RcHm_v2.0_Chr2g0097791 Rosa chinensis HOM05D007703 ORTHO05D009731 2.6e-12 75.1 51 66.7
ATR0564G384 Amborella trichopoda HOM05D007703 ORTHO05D009731 7.7e-12 73.6 58 62.1
Ah.05g168540 Amaranthus hybridus HOM05D007703 ORTHO05D009731 3.6e-09 64.7 42 73.8
Haze_00567 Corylus avellana HOM05D007703 ORTHO05D009731 1.4e-08 62.8 116 37.9
CDE10G0176 Ceratophyllum demersum HOM05D007703 ORTHO05D009731 8.8e-08 60.1 40 70.0
CSS0046153 Camellia sinensis var. sinensis HOM05D007703 ORTHO05D009731 6.3e-06 53.9 36 69.4


User provided reference genes

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