Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g19610 Schrenkiella parvula HOM05D004520 ORTHO05D005520 2.9e-63 245.7 196 100.0
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 9.3e-38 161.0 119 71.4
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 2.7e-37 159.5 120 80.8
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 2.7e-37 159.5 120 80.0
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 1.9e-35 153.3 122 70.5
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 6.2e-34 148.3 121 68.6
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 1.4e-33 147.1 91 81.3
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 1.4e-33 147.1 91 81.3
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 1.4e-33 147.1 91 81.3
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 1.8e-33 146.7 122 66.4
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 2.4e-33 146.4 91 81.3
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 2.4e-33 146.4 91 81.3
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 4.0e-33 145.6 91 80.2
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 4.0e-33 145.6 119 68.9
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 3.8e-31 139.0 120 68.3
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 1.9e-30 136.7 91 78.0
A08p28610 Brassica napus HOM05D003425 ORTHO05D003897 1.6e-29 133.7 91 74.7
BraA08t34791Z Brassica rapa HOM05D003425 ORTHO05D003897 1.6e-29 133.7 91 74.7
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 3.9e-28 129.0 91 73.6
C08p21380 Brassica napus HOM05D003425 ORTHO05D003897 3.9e-28 129.0 91 73.6
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 8.7e-28 127.9 91 72.5
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 2.8e-26 122.9 87 73.6
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 4.8e-26 122.1 120 59.2
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 2.0e-24 116.7 120 57.5
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 5.0e-15 85.5 89 51.7
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 6.5e-15 85.1 91 53.8
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 1.4e-14 84.0 95 51.6
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 1.9e-14 83.6 97 51.5
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 2.5e-14 83.2 103 48.5
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 3.2e-14 82.8 91 50.5
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 4.2e-14 82.4 97 50.5
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 5.5e-14 82.0 89 49.4
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 9.4e-14 81.3 96 50.0
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 9.4e-14 81.3 91 50.5
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 9.4e-14 81.3 88 48.9
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.6e-13 80.5 91 51.6
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 2.1e-13 80.1 100 49.0
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 3.6e-13 79.3 92 51.1
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 4.6e-13 79.0 87 47.1
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 1.0e-12 77.8 90 45.6
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 1.8e-12 77.0 88 50.0
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.8e-12 77.0 88 50.0
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.8e-12 77.0 88 50.0
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.8e-12 77.0 88 50.0
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 2.3e-12 76.6 87 48.3
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.0e-12 76.3 88 50.0
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 3.9e-12 75.9 88 47.7
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 5.1e-12 75.5 91 47.3
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 5.1e-12 75.5 95 49.5
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 8.8e-12 74.7 87 49.4
Migut.N02919 Erythranthe guttata HOM05D004520 ORTHO05D005520 1.1e-11 74.3 89 47.2
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 1.5e-11 73.9 91 52.7
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 1.5e-11 73.9 97 49.5
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 2.0e-11 73.6 114 40.4
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 2.0e-11 73.6 90 46.7
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 5.7e-11 72.0 89 47.2
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 7.4e-11 71.6 93 49.5
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 7.4e-11 71.6 90 48.9
Atru.chr13.1276 Acer truncatum HOM05D004520 ORTHO05D005520 9.7e-11 71.2 92 51.1
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 1.3e-10 70.9 90 43.3
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 1.7e-10 70.5 89 46.1
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 2.2e-10 70.1 90 48.9
MD08G1176500 Malus domestica HOM05D004520 ORTHO05D005520 2.8e-10 69.7 93 48.4
Prupe.1G552400 Prunus persica HOM05D004520 ORTHO05D005520 2.8e-10 69.7 93 47.3
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 3.7e-10 69.3 89 43.8
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 3.7e-10 69.3 94 46.8
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 1.8e-09 67.0 91 45.1
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 3.1e-09 66.2 91 40.7
Phvul.008G170000 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 3.1e-09 66.2 86 44.2
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 4.1e-09 65.9 87 44.8
Ciclev10003829m.g Citrus clementina HOM05D004520 ORTHO05D005520 5.3e-09 65.5 100 39.0
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 6.9e-09 65.1 91 44.0
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 9.1e-09 64.7 38 76.3
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 1.2e-08 64.3 93 49.5
Glyma.13G086100 Glycine max HOM05D004520 ORTHO05D005520 1.2e-08 64.3 69 44.9
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 1.5e-08 63.9 92 52.2
CDE10G0363 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 2.6e-08 63.2 40 72.5
Gohir.A05G268200 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.4e-08 62.8 91 41.8
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.4e-08 62.8 91 44.0
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 4.5e-08 62.4 91 42.9
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 5.9e-08 62.0 91 41.8
CDE10G1290 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 7.7e-08 61.6 86 41.9
arahy.Tifrunner.gnm1.ann1.1581IW Arachis hypogaea HOM05D004520 ORTHO05D005520 1.3e-07 60.8 38 71.1
arahy.Tifrunner.gnm1.ann1.8K5I59 Arachis hypogaea HOM05D004520 ORTHO05D005520 1.3e-07 60.8 38 71.1
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.3e-07 60.8 91 41.8
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 1.7e-07 60.5 88 40.9
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 2.2e-07 60.1 91 45.1
MBI02_g37831_MAGBIO Magnolia biondii HOM05D004520 ORTHO05D005520 2.2e-07 60.1 40 67.5
FvH4_5g38160 Fragaria vesca HOM05D004520 ORTHO05D005520 2.9e-07 59.7 91 39.6
FAN08G0369 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.9e-07 59.7 91 39.6
FAN13G0916 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.9e-07 59.7 91 39.6
FAN18G1022 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.9e-07 59.7 91 39.6
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.9e-07 59.7 91 41.8
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 5.0e-07 58.9 92 40.2
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 5.0e-07 58.9 39 71.8
SalBow6G4633 Salvia bowleyana HOM05D004520 ORTHO05D005520 5.0e-07 58.9 90 42.2
Cpa.g.sc66.103 Carica papaya HOM05D004520 ORTHO05D005520 6.5e-07 58.5 93 43.0
FAN04G0088 Fragaria x ananassa HOM05D004520 ORTHO05D005520 6.5e-07 58.5 91 39.6
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.4e-06 57.4 92 40.2
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.4e-06 57.4 92 40.2
PSO210G7148 Papaver somniferum HOM05D004520 ORTHO05D005520 1.4e-06 57.4 38 71.1
PSO447G0143 Papaver somniferum HOM05D004520 ORTHO05D005520 1.4e-06 57.4 38 71.1
SalBow6G1129 Salvia bowleyana HOM05D004520 ORTHO05D005520 1.4e-06 57.4 90 41.1
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 1.4e-06 57.4 94 40.4
Aqoxy6G00530 Aquilegia oxysepala HOM05D004520 ORTHO05D005520 1.9e-06 57.0 37 75.7
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 1.9e-06 57.0 91 39.6
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 3.2e-06 56.2 91 40.7
Prupe.1G510300 Prunus persica HOM05D004520 ORTHO05D005520 4.2e-06 55.8 97 38.1
Migut.C00189 Erythranthe guttata HOM05D004520 ORTHO05D005520 5.5e-06 55.5 96 41.7
Sed0005622 Sechium edule HOM05D004520 ORTHO05D005520 9.4e-06 54.7 83 41.0


User provided reference genes

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