Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g19330 Schrenkiella parvula HOM05D006879 ORTHO05D008452 1.2e-55 219.5 107 100.0
BcaC05g26099 Brassica carinata HOM05D006879 ORTHO05D008452 2.3e-51 205.3 108 93.5
BcaB07g32176 Brassica carinata HOM05D006879 ORTHO05D008452 3.4e-50 201.4 108 92.6
Thhalv10009164m.g Eutrema salsugineum HOM05D006879 ORTHO05D008452 7.5e-50 200.3 107 91.6
BolC5t30777H Brassica oleracea HOM05D006879 ORTHO05D008452 9.9e-50 199.9 108 91.7
A06p17880 Brassica napus HOM05D006879 ORTHO05D008452 8.3e-49 196.8 108 89.8
C05p20780 Brassica napus HOM05D006879 ORTHO05D008452 8.3e-49 196.8 108 91.7
BraA06t24878Z Brassica rapa HOM05D006879 ORTHO05D008452 8.3e-49 196.8 108 89.8
Carub.0001s2123 Capsella rubella HOM05D006879 ORTHO05D008452 3.9e-46 188.0 106 84.0
AL1G34970 Arabidopsis lyrata HOM05D006879 ORTHO05D008452 2.5e-45 185.3 107 85.0
AT1G21770 Arabidopsis thaliana HOM05D006879 ORTHO05D008452 1.6e-44 182.6 107 84.1
Aa31LG7G5750 Aethionema arabicum HOM05D006879 ORTHO05D008452 4.7e-44 181.0 107 82.2
AL2G37750 Arabidopsis lyrata HOM05D006879 ORTHO05D008452 8.9e-43 176.8 107 80.4
Thhalv10019334m.g Eutrema salsugineum HOM05D006879 ORTHO05D008452 2.0e-42 175.6 107 80.4
BcaB02g07111 Brassica carinata HOM05D006879 ORTHO05D008452 7.6e-42 173.7 106 78.3
AT1G77540 Arabidopsis thaliana HOM05D006879 ORTHO05D008452 9.9e-42 173.3 107 78.5
C06p31190 Brassica napus HOM05D006879 ORTHO05D008452 6.4e-41 170.6 106 77.4
BcaC08g45472 Brassica carinata HOM05D006879 ORTHO05D008452 8.4e-41 170.2 106 76.4
A07p27940 Brassica napus HOM05D006879 ORTHO05D008452 8.4e-41 170.2 99 77.8
BolC6t38260H Brassica oleracea HOM05D006879 ORTHO05D008452 8.4e-41 170.2 106 76.4
BraA07t30441Z Brassica rapa HOM05D006879 ORTHO05D008452 8.4e-41 170.2 99 77.8
Sp5g32720 Schrenkiella parvula HOM05D006879 ORTHO05D008452 1.1e-40 169.9 106 79.2
Carub.0002s2444 Capsella rubella HOM05D006879 ORTHO05D008452 3.2e-40 168.3 107 77.6
CARHR071070 Cardamine hirsuta HOM05D006879 ORTHO05D008452 7.1e-40 167.2 106 78.3
Aa31LG4G7630 Aethionema arabicum HOM05D006879 ORTHO05D008452 1.1e-37 159.8 106 72.6
MD15G1347100 Malus domestica HOM05D006879 ORTHO05D008452 1.4e-35 152.9 104 70.2
Cfa016025 Carpinus fangiana HOM05D006879 ORTHO05D008452 3.1e-35 151.8 99 70.7
Haze_00431 Corylus avellana HOM05D000586 ORTHO05D008452 9.0e-35 150.2 97 70.1
QL09p034330 Quercus lobata HOM05D006879 ORTHO05D008452 9.0e-35 150.2 103 68.0
QL09p034374 Quercus lobata HOM05D006879 ORTHO05D008452 9.0e-35 150.2 103 68.0
Manes.02G164300 Manihot esculenta HOM05D006879 ORTHO05D008452 1.2e-34 149.8 97 72.2
THA.LOC104813659 Tarenaya hassleriana HOM05D006879 ORTHO05D008452 1.2e-34 149.8 97 75.3
Atru.chr13.1490 Acer truncatum HOM05D006879 ORTHO05D008452 5.8e-34 147.5 109 67.0
Ciclev10002899m.g Citrus clementina HOM05D006879 ORTHO05D008452 7.6e-34 147.1 97 68.0
arahy.Tifrunner.gnm1.ann1.0SZ2NS Arachis hypogaea HOM05D006879 ORTHO05D008452 1.3e-33 146.4 96 69.8
arahy.Tifrunner.gnm1.ann1.61DA9N Arachis hypogaea HOM05D006879 ORTHO05D008452 1.3e-33 146.4 96 69.8
arahy.Tifrunner.gnm1.ann1.GV74HV Arachis hypogaea HOM05D006879 ORTHO05D008452 1.3e-33 146.4 96 69.8
Potri.005G178501 Populus trichocarpa HOM05D006879 ORTHO05D008452 2.2e-33 145.6 106 67.9
Sed0023358 Sechium edule HOM05D006879 ORTHO05D008452 2.9e-33 145.2 98 63.3
FAN20G0093 Fragaria x ananassa HOM05D006879 ORTHO05D008452 3.8e-33 144.8 95 67.4
Prupe.1G494800 Prunus persica HOM05D006879 ORTHO05D008452 3.8e-33 144.8 106 65.1
Solyc08g067800.3 Solanum lycopersicum HOM05D006879 ORTHO05D008452 4.9e-33 144.4 100 64.0
Sopen08g021740 Solanum pennellii HOM05D006879 ORTHO05D008452 4.9e-33 144.4 100 64.0
FvH4_2g27080 Fragaria vesca HOM05D006879 ORTHO05D008452 6.4e-33 144.1 95 66.3
MELO3C010476.2 Cucumis melo HOM05D006879 ORTHO05D008452 8.4e-33 143.7 98 61.2
CsaV3_4G028290 Cucumis sativus L. HOM05D006879 ORTHO05D008452 1.4e-32 142.9 98 60.2
Nn5g28321 Nelumbo nucifera HOM05D006879 ORTHO05D008452 1.4e-32 142.9 100 61.0
TWI32G0821 Tripterygium wilfordii HOM05D006879 ORTHO05D008452 1.4e-32 142.9 99 66.7
Thecc.08G126700 Theobroma cacao HOM05D006879 ORTHO05D008452 1.9e-32 142.5 104 64.4
FAN24G0949 Fragaria x ananassa HOM05D006879 ORTHO05D008452 2.4e-32 142.1 95 65.3
Aqoxy6G00233 Aquilegia oxysepala HOM05D006879 ORTHO05D008452 3.2e-32 141.7 106 63.2
Dinv27305 Davidia involucrata HOM05D006879 ORTHO05D008452 3.2e-32 141.7 97 64.9
Gohir.D01G180300 Gossypium hirsutum HOM05D006879 ORTHO05D008452 3.2e-32 141.7 104 65.4
PGR083G2398 Punica granatum HOM05D006879 ORTHO05D008452 3.2e-32 141.7 99 64.6
CSS0011792 Camellia sinensis var. sinensis HOM05D006879 ORTHO05D008452 4.2e-32 141.4 104 63.5
Duzib041G0788 Durio zibethinus HOM05D006879 ORTHO05D008452 4.2e-32 141.4 104 64.4
CiPaw.06G031600 Carya illinoinensis HOM05D006879 ORTHO05D008452 5.4e-32 141.0 98 65.3
Gorai.002G222300 Gossypium raimondii HOM05D006879 ORTHO05D008452 5.4e-32 141.0 104 65.4
CDE07G0981 Ceratophyllum demersum HOM05D006879 ORTHO05D008452 7.1e-32 140.6 105 62.9
Dinv07211 Davidia involucrata HOM05D006879 ORTHO05D008452 7.1e-32 140.6 97 62.9
Gohir.A01G189200 Gossypium hirsutum HOM05D006879 ORTHO05D008452 7.1e-32 140.6 104 64.4
Lsat_1_v5_gn_6_93360 Lactuca sativa HOM05D006879 ORTHO05D008452 1.2e-31 139.8 101 64.4
Phvul.008G160300 Phaseolus vulgaris HOM05D006879 ORTHO05D008452 1.2e-31 139.8 93 67.7
HanXRQChr03g0088981 Helianthus annuus HOM05D006879 ORTHO05D008452 1.6e-31 139.4 104 63.5
RcHm_v2.0_Chr6g0295961 Rosa chinensis HOM05D006879 ORTHO05D008452 2.1e-31 139.0 95 64.2
ClCG11G015720 Citrullus lanatus HOM05D006879 ORTHO05D008452 4.6e-31 137.9 110 55.5
Glyma.14G151700 Glycine max HOM05D006879 ORTHO05D008452 4.6e-31 137.9 96 67.7
Lj1g0005641 Lotus japonicus HOM05D006879 ORTHO05D008452 4.6e-31 137.9 95 65.3
Eucgr.F03793 Eucalyptus grandis HOM05D006879 ORTHO05D008452 6.0e-31 137.5 95 63.2
Sc02g0005010 Simmondsia chinensis HOM05D006879 ORTHO05D008452 6.0e-31 137.5 97 62.9
CAN.G21.5 Capsicum annuum HOM05D006879 ORTHO05D008452 7.8e-31 137.1 105 61.9
Cc10_g12010 Coffea canephora HOM05D006879 ORTHO05D008452 7.8e-31 137.1 104 63.5
COL.COLO4_03398 Corchorus olitorius HOM05D006879 ORTHO05D008452 7.8e-31 137.1 95 63.2
VMungo0647G0471 Vigna mungo HOM05D006879 ORTHO05D008452 1.7e-30 136.0 93 66.7
Hund17297 Selenicereus undatus HOM05D006879 ORTHO05D008452 2.3e-30 135.6 99 61.6
EL10Ac1g01022 Beta vulgaris HOM05D006879 ORTHO05D008452 3.0e-30 135.2 99 62.6
AUR62019072 Chenopodium quinoa HOM05D006879 ORTHO05D008452 3.0e-30 135.2 103 61.2
Medtr3g088570 Medicago truncatula HOM05D006879 ORTHO05D008452 3.0e-30 135.2 95 62.1
Lalb_Chr11g0066061 Lupinus albus HOM05D006879 ORTHO05D008452 6.6e-30 134.0 91 63.7
Nitab4.5_0005583g0080 Nicotiana tabacum HOM05D006879 ORTHO05D008452 6.6e-30 134.0 97 63.9
AUR62014329 Chenopodium quinoa HOM05D006879 ORTHO05D008452 8.7e-30 133.7 102 60.8
TAR628G0734 Trochodendron aralioides HOM05D006879 ORTHO05D008452 1.1e-29 133.3 92 63.0
Ca_28182_v3 Cicer arietinum L. HOM05D006879 ORTHO05D008452 1.5e-29 132.9 96 65.6
Psat5g086200 Pisum sativum HOM05D006879 ORTHO05D008452 2.5e-29 132.1 93 64.5
MSTRG.25382 Avicennia marina HOM05D006879 ORTHO05D008452 3.3e-29 131.7 108 57.4
ECA240G3722 Erigeron canadensis HOM05D006879 ORTHO05D008452 5.6e-29 131.0 101 60.4
Actinidia03466 Actinidia chinensis HOM05D006879 ORTHO05D008452 7.3e-29 130.6 104 61.5
Migut.C01128 Erythranthe guttata HOM05D006879 ORTHO05D008452 7.3e-29 130.6 102 58.8
Hma1.2p1_0054F.1_g031040 Hydrangea macrophylla HOM05D006879 ORTHO05D008452 1.3e-28 129.8 104 57.7
Nitab4.5_0004334g0040 Nicotiana tabacum HOM05D006879 ORTHO05D008452 1.3e-28 129.8 95 62.1
CANSAT56G2034 Cannabis sativa HOM05D006879 ORTHO05D008452 2.1e-28 129.0 114 57.9
ATR0584G146 Amborella trichopoda HOM05D006879 ORTHO05D008452 2.8e-28 128.6 91 63.7
PSO528G0112 Papaver somniferum HOM05D006879 ORTHO05D008452 1.1e-27 126.7 99 56.6
SGA_v2.0_scaffold52G18964 Striga asiatica HOM05D006879 ORTHO05D008452 9.0e-27 123.6 106 54.7
FAN15G3590 Fragaria x ananassa HOM05D006879 ORTHO05D008452 1.5e-26 122.9 130 47.7
PSO170G0506 Papaver somniferum HOM05D006879 ORTHO05D008452 7.6e-26 120.6 99 54.5
vmacro00838 Vaccinium macrocarpon HOM05D006879 ORTHO05D008452 6.0e-23 110.9 77 66.2
Cpa.g.sc418.6 Carica papaya HOM05D006879 ORTHO05D008452 2.3e-22 109.0 79 60.8
TPR.G20905 Trifolium pratense HOM05D006879 ORTHO05D008452 5.1e-22 107.8 78 62.8
CAN.G21.4 Capsicum annuum HOM05D006879 ORTHO05D008452 8.7e-22 107.1 105 46.7
RhsimUnG0092300 Rhododendron simsii HOM05D000586 ORTHO05D008452 8.7e-22 107.1 77 64.9
SMO146G0286 Selaginella moellendorffii HOM05D006879 ORTHO05D008452 3.3e-21 105.1 94 50.0
GSVIVG01008857001 Vitis vinifera HOM05D006879 ORTHO05D008452 4.3e-21 104.8 64 73.4
Oeu059437.1 Olea europaea HOM05D006879 ORTHO05D008452 2.1e-20 102.4 64 71.9
Zm00001eb082730 Zea mays HOM05D006879 ORTHO05D008452 3.7e-20 101.7 96 51.0
Pp3c12_9490 Physcomitrium patens HOM05D006879 ORTHO05D008452 2.4e-19 99.0 106 46.2
Ah.05g171050 Amaranthus hybridus HOM05D006879 ORTHO05D008452 5.3e-19 97.8 80 57.5
Mapoly0075s0062 Marchantia polymorpha HOM05D006879 ORTHO05D008452 1.7e-17 92.8 112 39.3
Peaxi162Scf00332g00015 Petunia axillaris HOM05D006879 ORTHO05D008452 3.2e-16 88.6 64 65.6
AagrBONN_evm.TU.Sc2ySwM_117.2168 Anthoceros agrestis HOM05D006879 ORTHO05D008452 1.2e-15 86.7 100 44.0
Os04g0431300 Oryza sativa ssp. japonica HOM05D006879 ORTHO05D008452 4.6e-15 84.7 62 59.7
SEGI_19819 Sequoiadendron giganteum HOM05D006879 ORTHO05D008452 6.0e-15 84.3 111 41.4
HanXRQChr01g0005251 Helianthus annuus HOM05D006879 ORTHO05D008452 2.3e-14 82.4 64 59.4
HanXRQChr04g0101301 Helianthus annuus HOM05D006879 ORTHO05D008452 2.3e-14 82.4 62 62.9
Eucgr.H03927 Eucalyptus grandis HOM05D006879 ORTHO05D008452 9.0e-11 70.5 93 44.1
CBR_g36233 Chara braunii HOM05D006879 ORTHO05D008452 4.5e-10 68.2 63 44.4
HanXRQChr09g0244451 Helianthus annuus HOM05D006879 ORTHO05D008452 9.3e-08 60.5 44 61.4
Eucgr.H03925 Eucalyptus grandis HOM05D006879 ORTHO05D008452 1.3e-06 56.6 50 48.0
MCO09G076 Micromonas commoda HOM05D006879 ORTHO05D008452 1.8e-06 56.2 67 44.8


User provided reference genes

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