Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g19030 Schrenkiella parvula HOM05D007607 ORTHO05D009603 7.9e-53 210.7 151 100.0
BcaB07g32146 Brassica carinata HOM05D007607 ORTHO05D009603 1.6e-42 176.4 118 89.8
BraA06t24849Z Brassica rapa HOM05D007607 ORTHO05D009603 2.8e-42 175.6 118 89.8
A06p17530 Brassica napus HOM05D007607 ORTHO05D009603 1.1e-41 173.7 118 89.0
BcaC05g26059 Brassica carinata HOM05D007607 ORTHO05D009603 9.0e-41 170.6 119 89.1
BolC5t30734H Brassica oleracea HOM05D007607 ORTHO05D009603 9.0e-41 170.6 119 89.1
BcaC06g34863 Brassica carinata HOM05D007607 ORTHO05D009603 2.0e-40 169.5 119 86.6
BolC7t42778H Brassica oleracea HOM05D007607 ORTHO05D009603 2.0e-40 169.5 119 86.6
C05p20400 Brassica napus HOM05D007607 ORTHO05D009603 2.6e-40 169.1 119 88.2
A07p15130 Brassica napus HOM05D007607 ORTHO05D009603 3.4e-40 168.7 119 84.9
C07p22190 Brassica napus HOM05D007607 ORTHO05D009603 2.9e-39 165.6 119 85.7
BcaB03g14267 Brassica carinata HOM05D007607 ORTHO05D009603 5.0e-39 164.9 119 84.0
Thhalv10009074m.g Eutrema salsugineum HOM05D007607 ORTHO05D009603 3.2e-38 162.2 116 86.2
CARHR021860 Cardamine hirsuta HOM05D007607 ORTHO05D009603 2.2e-34 149.4 118 79.7
AL1G34640 Arabidopsis lyrata HOM05D007607 ORTHO05D009603 4.8e-34 148.3 115 81.7
AT1G21500 Arabidopsis thaliana HOM05D007607 ORTHO05D009603 3.1e-33 145.6 115 80.0
Carub.0001s2092 Capsella rubella HOM05D007607 ORTHO05D009603 3.4e-32 142.1 115 74.8
Aa31LG7G5390 Aethionema arabicum HOM05D007607 ORTHO05D009603 1.7e-31 139.8 119 74.8
THA.LOC104813690 Tarenaya hassleriana HOM05D007607 ORTHO05D009603 1.5e-19 100.1 115 61.7
Gohir.A10G145500 Gossypium hirsutum HOM05D007607 ORTHO05D009603 8.0e-13 77.8 126 51.6
Gohir.D10G121500 Gossypium hirsutum HOM05D007607 ORTHO05D009603 4.0e-12 75.5 126 50.8
Gorai.011G133600 Gossypium raimondii HOM05D007607 ORTHO05D009603 4.0e-12 75.5 126 50.8
Eucgr.H00285 Eucalyptus grandis HOM05D007607 ORTHO05D009603 1.2e-11 73.9 127 55.9
Haze_01353 Corylus avellana HOM05D007607 ORTHO05D009603 1.3e-10 70.5 77 64.9
Atru.chr4.1510 Acer truncatum HOM05D007607 ORTHO05D009603 1.7e-10 70.1 80 62.5
Ciclev10022842m.g Citrus clementina HOM05D007607 ORTHO05D009603 2.2e-10 69.7 77 66.2
Atru.chr4.1481 Acer truncatum HOM05D007607 ORTHO05D009603 2.8e-10 69.3 80 62.5
Peaxi162Scf00883g00099 Petunia axillaris HOM05D007607 ORTHO05D009603 2.8e-10 69.3 121 51.2
Rhsim02G0085800 Rhododendron simsii HOM05D007607 ORTHO05D009603 3.7e-10 68.9 77 66.2
RhsimUnG0015300 Rhododendron simsii HOM05D007607 ORTHO05D009603 3.7e-10 68.9 77 66.2
Cfa015274 Carpinus fangiana HOM05D007607 ORTHO05D009603 4.8e-10 68.6 77 51.9
QL10p057428 Quercus lobata HOM05D007607 ORTHO05D009603 6.3e-10 68.2 77 62.3
QL10p057723 Quercus lobata HOM05D007607 ORTHO05D009603 6.3e-10 68.2 77 66.2
Actinidia28975 Actinidia chinensis HOM05D007607 ORTHO05D009603 1.4e-09 67.0 125 42.4
Manes.05G131900 Manihot esculenta HOM05D007607 ORTHO05D009603 1.4e-09 67.0 129 50.4
CiPaw.01G169900 Carya illinoinensis HOM05D007607 ORTHO05D009603 3.1e-09 65.9 82 57.3
CSS0037895 Camellia sinensis var. sinensis HOM05D007607 ORTHO05D009603 4.1e-09 65.5 80 66.2
PGR142G0203 Punica granatum HOM05D007607 ORTHO05D009603 4.1e-09 65.5 77 63.6
Dinv18311 Davidia involucrata HOM05D007607 ORTHO05D009603 9.1e-09 64.3 77 58.4
Glyma.07G206400 Glycine max HOM05D007607 ORTHO05D009603 9.1e-09 64.3 78 61.5
MD02G1004100 Malus domestica HOM05D007607 ORTHO05D009603 9.1e-09 64.3 79 63.3
arahy.Tifrunner.gnm1.ann1.RJI6AK Arachis hypogaea HOM05D007607 ORTHO05D009603 1.2e-08 63.9 79 63.3
MSTRG.22043 Avicennia marina HOM05D007607 ORTHO05D009603 1.2e-08 63.9 118 50.0
MD15G1147800 Malus domestica HOM05D007607 ORTHO05D009603 1.2e-08 63.9 85 62.4
CAN.G1237.5 Capsicum annuum HOM05D007607 ORTHO05D009603 1.6e-08 63.5 82 59.8
Lj4g0023803 Lotus japonicus HOM05D007607 ORTHO05D009603 1.6e-08 63.5 121 43.8
Nitab4.5_0008331g0020 Nicotiana tabacum HOM05D001883 ORTHO05D002184 1.6e-08 63.5 119 49.6
Cpa.g.sc343.4 Carica papaya HOM05D007607 ORTHO05D009603 2.0e-08 63.2 37 91.9
Potri.013G128700 Populus trichocarpa HOM05D007607 ORTHO05D009603 2.7e-08 62.8 78 61.5
CSS0042213 Camellia sinensis var. sinensis HOM05D007607 ORTHO05D009603 3.5e-08 62.4 157 43.9
CiPaw.02G100000 Carya illinoinensis HOM05D007607 ORTHO05D009603 3.5e-08 62.4 77 58.4
MSTRG.24562 Avicennia marina HOM05D007607 ORTHO05D009603 4.5e-08 62.0 82 64.6
Duzib212G0637 Durio zibethinus HOM05D007607 ORTHO05D009603 4.5e-08 62.0 126 41.3
TWI15G0968 Tripterygium wilfordii HOM05D007607 ORTHO05D009603 4.5e-08 62.0 77 64.9
Cc03_g14540 Coffea canephora HOM05D007607 ORTHO05D009603 5.9e-08 61.6 118 51.7
HanXRQChr02g0059081 Helianthus annuus HOM05D007607 ORTHO05D009603 7.7e-08 61.2 114 50.0
CANSAT56G1551 Cannabis sativa HOM05D007607 ORTHO05D009603 1.0e-07 60.8 130 44.6
ECA233G0487 Erigeron canadensis HOM05D007607 ORTHO05D009603 1.0e-07 60.8 98 41.8
Glyma.02G138600 Glycine max HOM05D007607 ORTHO05D009603 1.0e-07 60.8 106 52.8
Lalb_Chr16g0384371 Lupinus albus HOM05D007607 ORTHO05D009603 1.0e-07 60.8 75 60.0
Prupe.7G267000 Prunus persica HOM05D007607 ORTHO05D009603 1.0e-07 60.8 76 67.1
FvH4_1g00500 Fragaria vesca HOM05D007607 ORTHO05D009603 1.3e-07 60.5 78 65.4
MBI10_g16327_MAGBIO Magnolia biondii HOM05D007607 ORTHO05D009603 1.3e-07 60.5 77 62.3
Nitab4.5_0000575g0080 Nicotiana tabacum HOM05D007607 ORTHO05D009603 1.3e-07 60.5 83 62.7
RcHm_v2.0_Chr2g0085131 Rosa chinensis HOM05D007607 ORTHO05D009603 1.3e-07 60.5 80 68.8
Thecc.04G162800 Theobroma cacao HOM05D007607 ORTHO05D009603 1.3e-07 60.5 122 42.6
PSO017G0391 Papaver somniferum HOM05D007607 ORTHO05D009603 1.7e-07 60.1 77 49.4
Solyc12g019550.2 Solanum lycopersicum HOM05D007607 ORTHO05D009603 1.7e-07 60.1 77 61.0
PSO675G5570 Papaver somniferum HOM05D007607 ORTHO05D009603 2.2e-07 59.7 77 49.4
TAR362G0213 Trochodendron aralioides HOM05D007607 ORTHO05D009603 2.9e-07 59.3 78 62.8
Zm00001eb318610 Zea mays HOM05D007607 ORTHO05D009603 2.9e-07 59.3 36 86.1
Os09g0517000 Oryza sativa ssp. japonica HOM05D007607 ORTHO05D009603 3.8e-07 58.9 36 86.1
DCAR_005451 Daucus carota HOM05D007607 ORTHO05D009603 6.5e-07 58.2 119 42.0
Psat7g119360 Pisum sativum HOM05D007607 ORTHO05D009603 6.5e-07 58.2 110 48.2
SalBow6G6796 Salvia bowleyana HOM05D007607 ORTHO05D009603 6.5e-07 58.2 125 44.8
Aqoxy2G03795 Aquilegia oxysepala HOM05D007607 ORTHO05D009603 8.5e-07 57.8 88 54.5
Sopen12g009810 Solanum pennellii HOM05D007607 ORTHO05D009603 8.5e-07 57.8 36 86.1
ClCG11G013470 Citrullus lanatus HOM05D007607 ORTHO05D009603 1.9e-06 56.6 77 62.3
GSVIVG01038189001 Vitis vinifera HOM05D007607 ORTHO05D009603 1.9e-06 56.6 127 46.5
Lsat_1_v5_gn_8_9141 Lactuca sativa HOM05D007607 ORTHO05D009603 2.5e-06 56.2 115 40.0
VMungo0251G2348 Vigna mungo HOM05D007607 ORTHO05D009603 2.5e-06 56.2 106 48.1
Sed0020904 Sechium edule HOM05D007607 ORTHO05D009603 3.2e-06 55.8 77 45.5
Sc13g0006620 Simmondsia chinensis HOM05D007607 ORTHO05D009603 3.2e-06 55.8 120 39.2
PGSC0003DMG400029159 Solanum tuberosum HOM05D007607 ORTHO05D009603 3.2e-06 55.8 118 50.8
AUR62002416 Chenopodium quinoa HOM05D007607 ORTHO05D009603 4.2e-06 55.5 98 43.9
MELO3C011848.2 Cucumis melo HOM05D007607 ORTHO05D009603 5.5e-06 55.1 36 80.6
CsaV3_5G030090 Cucumis sativus L. HOM05D007607 ORTHO05D009603 5.5e-06 55.1 36 80.6
Medtr4g087540 Medicago truncatula HOM05D007607 ORTHO05D009603 7.2e-06 54.7 105 50.5
Ca_18631_v3 Cicer arietinum L. HOM05D004461 ORTHO05D005543 9.4e-06 54.3 78 44.9
Migut.N03053 Erythranthe guttata HOM05D007607 ORTHO05D009603 9.4e-06 54.3 123 47.2
Hund12359 Selenicereus undatus HOM05D007607 ORTHO05D009603 9.4e-06 54.3 104 45.2


User provided reference genes

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