Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g18920 Schrenkiella parvula HOM05D006006 ORTHO05D007566 4.2e-203 711.1 345 100.0
Thhalv10008107m.g Eutrema salsugineum HOM05D006006 ORTHO05D007566 1.0e-185 653.3 345 90.1
BraA06t24839Z Brassica rapa HOM05D006006 ORTHO05D007566 1.2e-181 639.8 346 90.8
C05p20260 Brassica napus HOM05D006006 ORTHO05D007566 4.6e-181 637.9 347 89.9
BolC5t30719H Brassica oleracea HOM05D006006 ORTHO05D007566 4.6e-181 637.9 347 89.9
BcaC05g26044 Brassica carinata HOM05D006006 ORTHO05D007566 1.0e-180 636.7 347 89.6
A06p17420 Brassica napus HOM05D006006 ORTHO05D007566 8.1e-178 627.1 345 89.0
BcaB07g32125 Brassica carinata HOM05D006006 ORTHO05D007566 4.9e-175 617.8 347 87.3
CARHR021760 Cardamine hirsuta HOM05D006006 ORTHO05D007566 3.2e-174 615.1 349 85.7
Carub.0001s2078 Capsella rubella HOM05D006006 ORTHO05D007566 2.7e-173 612.1 347 85.6
Aa31LG7G5530 Aethionema arabicum HOM05D006006 ORTHO05D007566 2.5e-171 605.5 344 85.2
BcaB03g12819 Brassica carinata HOM05D006006 ORTHO05D007566 4.3e-171 604.7 349 85.7
AT1G21370 Arabidopsis thaliana HOM05D006006 ORTHO05D007566 3.6e-170 601.7 345 84.6
C08p20770 Brassica napus HOM05D006006 ORTHO05D007566 1.1e-163 580.1 320 88.1
THA.LOC104813696 Tarenaya hassleriana HOM05D006006 ORTHO05D007566 8.9e-161 570.5 343 79.6
AL1G34470 Arabidopsis lyrata HOM05D006006 ORTHO05D007566 2.0e-160 569.3 302 90.4
BolC8t49716H Brassica oleracea HOM05D006006 ORTHO05D007566 2.7e-149 532.3 321 82.6
Cpa.g.sc49.54 Carica papaya HOM05D006006 ORTHO05D007566 1.9e-147 526.2 346 74.0
COL.COLO4_04848 Corchorus olitorius HOM05D006006 ORTHO05D007566 2.4e-145 519.2 349 72.8
Thecc.08G145800 Theobroma cacao HOM05D006006 ORTHO05D007566 5.3e-145 518.1 348 72.4
Atru.chr13.1712 Acer truncatum HOM05D006006 ORTHO05D007566 1.5e-144 516.5 348 71.0
Cfa018352 Carpinus fangiana HOM05D006006 ORTHO05D007566 1.5e-144 516.5 347 72.3
CiPaw.15G020800 Carya illinoinensis HOM05D006006 ORTHO05D007566 2.6e-144 515.8 347 73.2
Prupe.8G021400 Prunus persica HOM05D006006 ORTHO05D007566 2.6e-144 515.8 346 71.7
GSVIVG01010048001 Vitis vinifera HOM05D006006 ORTHO05D007566 2.6e-144 515.8 347 73.2
Duzib093G0547 Durio zibethinus HOM05D006006 ORTHO05D007566 5.8e-144 514.6 348 71.6
TAR381G0495 Trochodendron aralioides HOM05D006006 ORTHO05D007566 5.8e-144 514.6 347 73.2
QL02p024995 Quercus lobata HOM05D006006 ORTHO05D007566 6.4e-143 511.1 350 72.6
Nn1g06190 Nelumbo nucifera HOM05D006006 ORTHO05D007566 1.1e-142 510.4 340 73.2
ClCG09G009860 Citrullus lanatus HOM05D006006 ORTHO05D007566 1.4e-142 510.0 348 70.4
FvH4_2g14460 Fragaria vesca HOM05D006006 ORTHO05D007566 3.2e-142 508.8 346 72.3
Haze_17707 Corylus avellana HOM05D006006 ORTHO05D007566 9.3e-142 507.3 377 67.1
Lj7A365T41 Lonicera japonica HOM05D006006 ORTHO05D007566 1.6e-141 506.5 344 71.5
Lalb_Chr04g0263651 Lupinus albus HOM05D006006 ORTHO05D007566 1.6e-141 506.5 345 71.6
CsaV3_7G024870 Cucumis sativus L. HOM05D006006 ORTHO05D007566 2.7e-141 505.8 348 69.8
CiPaw.16G016900 Carya illinoinensis HOM05D006006 ORTHO05D007566 3.5e-141 505.4 349 71.3
CSS0049727 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 4.6e-141 505.0 347 71.5
CSS0044653 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 6.0e-141 504.6 347 71.5
FAN24G1565 Fragaria x ananassa HOM05D006006 ORTHO05D007566 7.9e-141 504.2 346 71.1
Potri.002G071300 Populus trichocarpa HOM05D006006 ORTHO05D007566 1.0e-140 503.8 337 74.5
RcHm_v2.0_Chr6g0276791 Rosa chinensis HOM05D006006 ORTHO05D007566 1.3e-140 503.4 348 70.7
Oeu051259.1 Olea europaea HOM05D006006 ORTHO05D007566 1.8e-140 503.1 341 72.4
FAN15G3392 Fragaria x ananassa HOM05D006006 ORTHO05D007566 2.3e-140 502.7 346 71.1
FAN27G0920 Fragaria x ananassa HOM05D006006 ORTHO05D007566 3.0e-140 502.3 346 70.8
TWI34G1885 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 3.0e-140 502.3 347 71.8
MD10G1017500 Malus domestica HOM05D006006 ORTHO05D007566 3.9e-140 501.9 333 71.5
Sabra02G0056100 Salix brachista HOM05D006006 ORTHO05D007566 3.9e-140 501.9 337 73.3
Aqoxy6G00385 Aquilegia oxysepala HOM05D006006 ORTHO05D007566 6.7e-140 501.1 347 70.9
MD05G1017500 Malus domestica HOM05D006006 ORTHO05D007566 6.7e-140 501.1 346 69.4
Ciclev10001700m.g Citrus clementina HOM05D006006 ORTHO05D007566 8.7e-140 500.7 347 68.3
Gohir.A02G066200 Gossypium hirsutum HOM05D006006 ORTHO05D007566 3.3e-139 498.8 348 70.7
Gorai.005G081300 Gossypium raimondii HOM05D006006 ORTHO05D007566 3.7e-138 495.4 348 70.1
MSTRG.24200 Avicennia marina HOM05D006006 ORTHO05D007566 4.8e-138 495.0 343 70.8
MBI03_g11319_MAGBIO Magnolia biondii HOM05D006006 ORTHO05D007566 4.8e-138 495.0 334 71.6
Manes.02G175900 Manihot esculenta HOM05D006006 ORTHO05D007566 6.2e-138 494.6 337 69.7
Gohir.D02G072100 Gossypium hirsutum HOM05D006006 ORTHO05D007566 8.1e-138 494.2 348 69.8
Oeu014478.2 Olea europaea HOM05D006006 ORTHO05D007566 4.0e-137 491.9 360 66.9
Eucgr.F04261 Eucalyptus grandis HOM05D006006 ORTHO05D007566 5.3e-137 491.5 334 70.4
Gorai.013G105300 Gossypium raimondii HOM05D006006 ORTHO05D007566 1.2e-136 490.3 347 69.5
FAN20G0686 Fragaria x ananassa HOM05D006006 ORTHO05D007566 2.0e-136 489.6 378 65.6
Glyma.13G039000 Glycine max HOM05D006006 ORTHO05D007566 2.0e-136 489.6 348 68.4
Gohir.D03G061500 Gossypium hirsutum HOM05D006006 ORTHO05D007566 2.6e-136 489.2 347 69.7
PSO675G8728 Papaver somniferum HOM05D006006 ORTHO05D007566 7.6e-136 487.6 341 70.4
PSO541G2188 Papaver somniferum HOM05D006006 ORTHO05D007566 1.3e-135 486.9 341 71.0
MELO3C023695.2 Cucumis melo HOM05D006006 ORTHO05D007566 1.7e-135 486.5 407 60.4
TWI60G1394 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 3.8e-135 485.3 347 69.5
CANSAT25G3881 Cannabis sativa HOM05D006006 ORTHO05D007566 4.9e-135 485.0 347 68.3
Glyma.14G123000 Glycine max HOM05D006006 ORTHO05D007566 3.2e-134 482.3 348 67.2
Nitab4.5_0000633g0110 Nicotiana tabacum HOM05D006006 ORTHO05D007566 4.2e-134 481.9 345 69.3
Sed0017044 Sechium edule HOM05D006006 ORTHO05D007566 4.2e-134 481.9 345 68.4
Nn5g28652 Nelumbo nucifera HOM05D006006 ORTHO05D007566 5.5e-134 481.5 347 69.5
PGR042G3502 Punica granatum HOM05D006006 ORTHO05D007566 7.1e-134 481.1 345 70.4
Phvul.001G072900 Phaseolus vulgaris HOM05D006006 ORTHO05D007566 1.6e-133 479.9 348 69.0
PGSC0003DMG400017575 Solanum tuberosum HOM05D006006 ORTHO05D007566 1.6e-133 479.9 344 68.9
Solyc06g060460.3 Solanum lycopersicum HOM05D006006 ORTHO05D007566 3.5e-133 478.8 347 68.6
Sopen06g020580 Solanum pennellii HOM05D006006 ORTHO05D007566 3.5e-133 478.8 347 68.3
arahy.Tifrunner.gnm1.ann1.T5RWDG Arachis hypogaea HOM05D006006 ORTHO05D007566 1.8e-132 476.5 352 67.0
Lj1g0023019 Lotus japonicus HOM05D006006 ORTHO05D007566 1.8e-132 476.5 351 67.5
arahy.Tifrunner.gnm1.ann1.D9Y8GI Arachis hypogaea HOM05D006006 ORTHO05D007566 3.9e-132 475.3 352 66.8
DCAR_008158 Daucus carota HOM05D006006 ORTHO05D007566 6.7e-132 474.6 334 68.9
CAN.G62.45 Capsicum annuum HOM05D006006 ORTHO05D007566 1.1e-131 473.8 346 68.5
BcaC07g39093 Brassica carinata HOM05D006006 ORTHO05D007566 4.3e-131 471.9 321 75.1
EL10Ac9g20647 Beta vulgaris HOM05D006006 ORTHO05D007566 3.7e-130 468.8 344 66.9
Migut.N03230 Erythranthe guttata HOM05D006006 ORTHO05D007566 4.8e-130 468.4 345 67.5
ATR1136G139 Amborella trichopoda HOM05D006006 ORTHO05D007566 1.1e-129 467.2 337 69.1
Ah.01g005030 Amaranthus hybridus HOM05D006006 ORTHO05D007566 1.8e-129 466.5 335 67.8
Os04g0438500 Oryza sativa ssp. japonica HOM05D006006 ORTHO05D007566 2.4e-129 466.1 346 66.8
Lj4A692T31 Lonicera japonica HOM05D006006 ORTHO05D007566 4.1e-129 465.3 347 66.0
TPR.G33300 Trifolium pratense HOM05D006006 ORTHO05D007566 6.9e-129 464.5 348 65.8
Medtr1g029000 Medicago truncatula HOM05D006006 ORTHO05D007566 1.2e-128 463.8 351 67.0
Ca_12665_v3 Cicer arietinum L. HOM05D006006 ORTHO05D007566 1.5e-128 463.4 347 66.9
VMungo0647G2124 Vigna mungo HOM05D006006 ORTHO05D007566 1.5e-128 463.4 332 69.3
Zm00001eb422860 Zea mays HOM05D006006 ORTHO05D007566 3.4e-128 462.2 328 67.7
HanXRQChr04g0109001 Helianthus annuus HOM05D006006 ORTHO05D007566 1.0e-127 460.7 350 66.0
Lsat_1_v5_gn_1_8980 Lactuca sativa HOM05D006006 ORTHO05D007566 5.0e-127 458.4 289 75.1
Cc10_g14250 Coffea canephora HOM05D006006 ORTHO05D007566 8.5e-127 457.6 327 67.6
Psat0s5561g0040 Pisum sativum HOM05D006006 ORTHO05D007566 7.2e-126 454.5 348 65.2
unitig_744.g24565 Utricularia gibba HOM05D006006 ORTHO05D007566 1.0e-124 450.7 344 64.8
unitig_21.g20180 Utricularia gibba HOM05D006006 ORTHO05D007566 3.0e-124 449.1 341 65.1
Actinidia15154 Actinidia chinensis HOM05D006006 ORTHO05D007566 6.7e-124 448.0 300 73.3
HanXRQChr08g0217661 Helianthus annuus HOM05D006006 ORTHO05D007566 1.5e-123 446.8 344 65.1
HPP92_004629 Vanilla planifolia HOM05D006006 ORTHO05D007566 2.5e-123 446.0 335 64.8
SHI09110 Sapria himalayana HOM05D006006 ORTHO05D007566 1.1e-115 420.6 338 63.3
ECA247G2705 Erigeron canadensis HOM05D006006 ORTHO05D007566 2.0e-112 409.8 246 76.4
Peaxi162Scf00051g00516 Petunia axillaris HOM05D006006 ORTHO05D007566 2.6e-112 409.5 232 79.7
C06p40100 Brassica napus HOM05D006006 ORTHO05D007566 3.8e-111 405.6 233 84.5
CDE06G2625 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 2.5e-110 402.9 248 73.8
CDE08G1689 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 1.6e-109 400.2 248 72.6
Mapoly0050s0105 Marchantia polymorpha HOM05D006006 ORTHO05D007566 1.1e-102 377.5 303 61.4
SEGI_37970 Sequoiadendron giganteum HOM05D006006 ORTHO05D007566 6.1e-101 371.7 329 58.1
Pp3c25_12020 Physcomitrium patens HOM05D006006 ORTHO05D007566 2.0e-96 356.7 333 55.6
Dinv25817 Davidia involucrata HOM05D006006 ORTHO05D007566 1.3e-95 354.0 255 71.8
SMO228G0011 Selaginella moellendorffii HOM05D006006 ORTHO05D007566 3.7e-90 335.9 243 65.4
SGA_v2.0_scaffold25G11170 Striga asiatica HOM05D006006 ORTHO05D007566 8.0e-85 318.2 239 67.4
Pp3c6_4630 Physcomitrium patens HOM05D006006 ORTHO05D007566 2.8e-82 309.7 325 51.1
Sc02g0004370 Simmondsia chinensis HOM05D006006 ORTHO05D007566 6.3e-82 308.5 244 65.6
Gohir.A02G108508 Gossypium hirsutum HOM05D006006 ORTHO05D007566 1.4e-81 307.4 244 65.6
Gohir.A02G108509 Gossypium hirsutum HOM05D006006 ORTHO05D007566 1.4e-81 307.4 244 65.6
Nitab4.5_0008475g0010 Nicotiana tabacum HOM05D006006 ORTHO05D007566 2.7e-80 303.1 242 66.5
AagrBONN_evm.TU.Sc2ySwM_344.2333 Anthoceros agrestis HOM05D006006 ORTHO05D007566 6.4e-66 255.4 173 69.9
MCO04G174 Micromonas commoda HOM05D006006 ORTHO05D007566 1.9e-62 243.8 246 48.4
TAR625G0955 Trochodendron aralioides HOM05D006006 ORTHO05D007566 7.5e-59 231.9 162 68.5
AUR62037127 Chenopodium quinoa HOM05D006006 ORTHO05D007566 3.5e-56 223.0 202 57.9
AUR62025132 Chenopodium quinoa HOM05D006006 ORTHO05D007566 8.6e-55 218.4 206 57.3
PRCOL_00006391 Prasinoderma coloniale HOM05D006006 ORTHO05D007566 4.0e-52 209.5 183 54.6
Cre02.g116000 Chlamydomonas reinhardtii HOM05D006006 ORTHO05D007566 1.2e-51 208.0 217 49.8
Pp3c5_24650 Physcomitrium patens HOM05D006006 ORTHO05D007566 1.2e-48 198.0 160 62.5
Ah.02g110550 Amaranthus hybridus HOM05D006006 ORTHO05D007566 9.0e-28 128.6 73 80.8
SGA_v2.0_scaffold35G14089 Striga asiatica HOM05D006006 ORTHO05D007566 8.4e-26 122.1 79 70.9
CDE04G1521 Ceratophyllum demersum HOM05D000566 ORTHO05D000686 5.8e-19 99.4 57 71.9
Pp3c16_22840 Physcomitrium patens HOM05D006006 ORTHO05D318415 5.5e-09 66.2 53 62.3


User provided reference genes

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