Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g18150 Schrenkiella parvula HOM05D002849 ORTHO05D009472 4.1e-57 224.6 117 100.0
AL1G33360 Arabidopsis lyrata HOM05D002849 ORTHO05D009472 1.1e-54 216.5 117 95.7
Thhalv10009140m.g Eutrema salsugineum HOM05D002849 ORTHO05D009472 7.2e-54 213.8 117 94.9
CARHR020890 Cardamine hirsuta HOM05D002849 ORTHO05D009472 1.2e-53 213.0 117 93.2
AT1G20430 Arabidopsis thaliana HOM05D002849 ORTHO05D009472 2.7e-53 211.8 117 94.0
Carub.0001s1990 Capsella rubella HOM05D002849 ORTHO05D009472 6.1e-53 210.7 117 93.2
BcaNung03382 Brassica carinata HOM05D002849 ORTHO05D009472 1.4e-52 209.5 117 92.3
C07p23030 Brassica napus HOM05D002849 ORTHO05D009472 1.4e-52 209.5 117 92.3
BolC7t42844H Brassica oleracea HOM05D002849 ORTHO05D009472 1.4e-52 209.5 117 92.3
A07p15680 Brassica napus HOM05D002849 ORTHO05D009472 3.0e-52 208.4 117 91.5
A07p15790 Brassica napus HOM05D002849 ORTHO05D009472 3.0e-52 208.4 117 91.5
BraA07t29306Z Brassica rapa HOM05D002849 ORTHO05D009472 3.0e-52 208.4 117 91.5
BcaB03g14321 Brassica carinata HOM05D002849 ORTHO05D009472 6.7e-52 207.2 117 90.6
Carub.0005s0958 Capsella rubella HOM05D002849 ORTHO05D009472 6.7e-52 207.2 117 90.6
BcaB07g32046 Brassica carinata HOM05D002849 ORTHO05D009472 2.2e-50 202.2 115 91.3
Aa31LG7G4740 Aethionema arabicum HOM05D002849 ORTHO05D009472 2.5e-46 188.7 117 81.2
Sp5g31300 Schrenkiella parvula HOM05D002849 ORTHO05D009472 1.3e-34 149.8 96 78.1
Haze_22739 Corylus avellana HOM05D002849 ORTHO05D007186 5.6e-30 134.4 114 63.2
THA.LOC104811451 Tarenaya hassleriana HOM05D002849 ORTHO05D009472 6.1e-29 131.0 117 59.0
Thecc.08G055000 Theobroma cacao HOM05D002849 ORTHO05D009472 3.0e-28 128.6 101 63.4
Cfa014031 Carpinus fangiana HOM05D002849 ORTHO05D009472 4.0e-28 128.3 114 60.5
TWI36G1301 Tripterygium wilfordii HOM05D002849 ORTHO05D009472 6.8e-28 127.5 114 63.2
Cpa.g.sc26.233 Carica papaya HOM05D002849 ORTHO05D007186 8.9e-28 127.1 114 62.3
ClCG05G015240 Citrullus lanatus HOM05D002849 ORTHO05D009472 1.5e-27 126.3 114 60.5
COL.COLO4_21616 Corchorus olitorius HOM05D002849 ORTHO05D009472 1.5e-27 126.3 114 60.5
Prupe.1G357000 Prunus persica HOM05D002849 ORTHO05D009472 2.6e-27 125.6 113 59.3
Gorai.010G000900 Gossypium raimondii HOM05D002849 ORTHO05D009472 4.4e-27 124.8 114 61.4
Duzib093G0992 Durio zibethinus HOM05D002849 ORTHO05D009472 9.8e-27 123.6 114 59.6
Gohir.A06G000700 Gossypium hirsutum HOM05D002849 ORTHO05D009472 9.8e-27 123.6 114 61.4
Sed0019383 Sechium edule HOM05D002849 ORTHO05D009472 2.9e-26 122.1 103 58.3
CiPaw.08G071000 Carya illinoinensis HOM05D002849 ORTHO05D009472 4.9e-26 121.3 114 57.0
Ciclev10002910m.g Citrus clementina HOM05D002849 ORTHO05D009472 8.3e-26 120.6 114 56.1
Potri.002G013601 Populus trichocarpa HOM05D002849 ORTHO05D009472 8.3e-26 120.6 114 57.9
RcHm_v2.0_Chr6g0303941 Rosa chinensis HOM05D002849 ORTHO05D009472 8.3e-26 120.6 115 57.4
PGR102G2189 Punica granatum HOM05D002849 ORTHO05D009472 1.1e-25 120.2 87 65.5
TWI56G1224 Tripterygium wilfordii HOM05D002849 ORTHO05D009472 1.1e-25 120.2 114 57.9
TAR381G0186 Trochodendron aralioides HOM05D002849 ORTHO05D009472 1.1e-25 120.2 114 57.9
ECA233G1055 Erigeron canadensis HOM05D002849 ORTHO05D009472 1.9e-25 119.4 96 63.5
Sabra02G0010600 Salix brachista HOM05D002849 ORTHO05D009472 2.4e-25 119.0 114 57.9
CsaV3_4G037080 Cucumis sativus L. HOM05D002849 ORTHO05D009472 4.1e-25 118.2 114 56.1
GSVIVG01008706001 Vitis vinifera HOM05D000148 ORTHO05D000081 4.1e-25 118.2 114 57.0
Sc26g0004580 Simmondsia chinensis HOM05D002849 ORTHO05D009472 5.4e-25 117.9 89 65.2
Manes.05G140800 Manihot esculenta HOM05D002849 ORTHO05D009472 9.2e-25 117.1 114 55.3
Atru.chr13.177 Acer truncatum HOM05D002849 ORTHO05D009472 1.2e-24 116.7 113 57.5
Ah.00g000480 Amaranthus hybridus HOM05D002849 ORTHO05D009472 1.6e-24 116.3 90 61.1
AUR62013835 Chenopodium quinoa HOM05D002849 ORTHO05D009472 2.0e-24 115.9 115 54.8
MD08G1004900 Malus domestica HOM05D002849 ORTHO05D009472 2.7e-24 115.5 113 55.8
SGA_v2.0_scaffold275G46557 Striga asiatica HOM05D002849 ORTHO05D009472 2.7e-24 115.5 114 56.1
AUR62036770 Chenopodium quinoa HOM05D002849 ORTHO05D009472 3.5e-24 115.2 115 54.8
MELO3C017006.2 Cucumis melo HOM05D002849 ORTHO05D009472 3.5e-24 115.2 114 54.4
FAN20G1236 Fragaria x ananassa HOM05D002849 ORTHO05D009472 6.0e-24 114.4 115 53.9
CANSAT80G0154 Cannabis sativa HOM05D002849 ORTHO05D009472 7.8e-24 114.0 114 56.1
CANSAT80G2323 Cannabis sativa HOM05D002849 ORTHO05D009472 7.8e-24 114.0 114 56.1
Dinv31914 Davidia involucrata HOM05D000894 ORTHO05D002325 7.8e-24 114.0 114 57.9
Eucgr.H01281 Eucalyptus grandis HOM05D002849 ORTHO05D009472 7.8e-24 114.0 111 54.1
CAN.G311.94 Capsicum annuum HOM05D002849 ORTHO05D009472 1.0e-23 113.6 87 64.4
QL02p013572 Quercus lobata HOM05D002849 ORTHO05D009472 2.3e-23 112.5 113 54.9
HanXRQChr08g0215861 Helianthus annuus HOM05D002849 ORTHO05D009472 5.0e-23 111.3 86 64.0
HanXRQChr08g0215951 Helianthus annuus HOM05D002849 ORTHO05D009472 5.0e-23 111.3 86 64.0
EL10Ac2g02687 Beta vulgaris HOM05D002849 ORTHO05D009472 6.6e-23 110.9 114 50.9
Medtr3g115060 Medicago truncatula HOM05D002849 ORTHO05D009472 1.1e-22 110.2 97 60.8
Sopen04g035780 Solanum pennellii HOM05D002849 ORTHO05D009472 1.5e-22 109.8 87 63.2
Ca_15446_v3 Cicer arietinum L. HOM05D002849 ORTHO05D009472 1.9e-22 109.4 86 62.8
Lalb_Chr11g0061731 Lupinus albus HOM05D002849 ORTHO05D009472 3.3e-22 108.6 101 52.5
MD11G1257900 Malus domestica HOM05D002849 ORTHO05D009472 4.3e-22 108.2 114 55.3
CSS0028449 Camellia sinensis var. sinensis HOM05D002849 ORTHO05D009472 5.6e-22 107.8 113 53.1
arahy.Tifrunner.gnm1.ann1.501GHP Arachis hypogaea HOM05D002849 ORTHO05D009472 9.5e-22 107.1 86 60.5
VMungo1309G2595 Vigna mungo HOM05D002849 ORTHO05D009472 9.5e-22 107.1 84 63.1
Glyma.06G019700 Glycine max HOM05D002849 ORTHO05D009472 1.2e-21 106.7 86 61.6
Psat5g010840 Pisum sativum HOM05D002849 ORTHO05D009472 1.2e-21 106.7 85 61.2
unitig_82.g27114 Utricularia gibba HOM05D002849 ORTHO05D009472 1.2e-21 106.7 87 58.6
Nn5g27128 Nelumbo nucifera HOM05D002849 ORTHO05D009472 2.1e-21 105.9 87 59.8
PGSC0003DMG400009966 Solanum tuberosum HOM05D002849 ORTHO05D009472 2.1e-21 105.9 115 53.0
Nitab4.5_0000588g0290 Nicotiana tabacum HOM05D002849 ORTHO05D009472 2.8e-21 105.5 87 60.9
Lj1g0005069 Lotus japonicus HOM05D002849 ORTHO05D009472 3.6e-21 105.1 88 61.4
Glyma.04G019400 Glycine max HOM05D002849 ORTHO05D009472 4.7e-21 104.8 86 60.5
Lsat_1_v5_gn_8_28281 Lactuca sativa HOM05D002849 ORTHO05D009472 4.7e-21 104.8 110 50.9
TPR.G38106 Trifolium pratense HOM05D002849 ORTHO05D009472 4.7e-21 104.8 115 50.4
Aqoxy5G01064 Aquilegia oxysepala HOM05D002849 ORTHO05D009472 6.2e-21 104.4 112 51.8
Nitab4.5_0003149g0010 Nicotiana tabacum HOM05D002849 ORTHO05D009472 6.2e-21 104.4 115 53.9
vmacro04390 Vaccinium macrocarpon HOM05D002849 ORTHO05D009472 8.0e-21 104.0 114 52.6
CDE04G0501 Ceratophyllum demersum HOM05D002849 ORTHO05D009472 1.1e-20 103.6 87 59.8
Migut.C00918 Erythranthe guttata HOM05D002849 ORTHO05D009472 1.1e-20 103.6 117 48.7
Nitab4.5_0000699g0200 Nicotiana tabacum HOM05D002849 ORTHO05D009472 1.1e-20 103.6 115 53.0
Solyc12g094480.3 Solanum lycopersicum HOM05D002849 ORTHO05D009472 1.8e-20 102.8 115 53.0
Sopen12g031370 Solanum pennellii HOM05D002849 ORTHO05D009472 1.8e-20 102.8 115 53.0
Aqoxy5G01070 Aquilegia oxysepala HOM05D002849 ORTHO05D009472 3.1e-20 102.1 112 50.9
Peaxi162Scf00174g01410 Petunia axillaris HOM05D002849 ORTHO05D009472 4.0e-20 101.7 84 60.7
Actinidia29779 Actinidia chinensis HOM05D002849 ORTHO05D009472 6.8e-20 100.9 80 63.8
PGSC0003DMG400029324 Solanum tuberosum HOM05D002849 ORTHO05D009472 8.9e-20 100.5 115 53.0
Actinidia37963 Actinidia chinensis HOM05D002849 ORTHO05D009472 1.2e-19 100.1 84 61.9
Cc10_g00900 Coffea canephora HOM05D002849 ORTHO05D009472 2.0e-19 99.4 114 50.0
Rhsim07G0252900 Rhododendron simsii HOM05D002849 ORTHO05D009472 2.0e-19 99.4 113 51.3
Phvul.009G021100 Phaseolus vulgaris HOM05D002849 ORTHO05D009472 5.8e-19 97.8 114 50.9
SHI08004 Sapria himalayana HOM05D002849 ORTHO05D009472 1.7e-18 96.3 87 50.6
VMungo0540G0079 Vigna mungo HOM05D002849 ORTHO05D009472 1.7e-18 96.3 111 50.5
DCAR_016751 Daucus carota HOM05D002849 ORTHO05D009472 6.4e-18 94.4 106 48.1
SalBow7G2120 Salvia bowleyana HOM05D002849 ORTHO05D009472 1.2e-16 90.1 87 48.3
ATR0661G222 Amborella trichopoda HOM05D002849 ORTHO05D009472 1.7e-15 86.3 84 51.2
Lalb_Chr01g0008401 Lupinus albus HOM05D002849 ORTHO05D009472 2.3e-15 85.9 95 48.4
Zm00001eb373140 Zea mays HOM05D002849 ORTHO05D009472 4.7e-13 78.2 84 45.2
Os06g0213900 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D009472 5.4e-09 64.7 84 39.3
arahy.Tifrunner.gnm1.ann1.H4T2PX Arachis hypogaea HOM05D002849 ORTHO05D009472 8.6e-07 57.4 72 43.1
arahy.Tifrunner.gnm1.ann1.PLB5QN Arachis hypogaea HOM05D003604 ORTHO05D004110 8.6e-07 57.4 72 43.1
SEGI_39053 Sequoiadendron giganteum HOM05D002849 ORTHO05D009472 2.5e-06 55.8 88 33.0


User provided reference genes

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