Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g18040 Schrenkiella parvula HOM05D003173 ORTHO05D003546 2.1e-135 485.7 249 100.0
Thhalv10009337m.g Eutrema salsugineum HOM05D003173 ORTHO05D003546 5.0e-97 358.2 249 76.3
BcaB07g32036 Brassica carinata HOM05D003173 ORTHO05D003546 2.9e-92 342.4 258 72.1
BolC7t42850H Brassica oleracea HOM05D003173 ORTHO05D003546 2.1e-87 326.2 257 71.2
BcaNung03372 Brassica carinata HOM05D003173 ORTHO05D003546 8.9e-86 320.9 257 70.8
C07p23130 Brassica napus HOM05D003173 ORTHO05D003546 8.9e-86 320.9 257 70.8
A06p16390 Brassica napus HOM05D003173 ORTHO05D003546 2.6e-85 319.3 259 69.1
BraA06t24743Z Brassica rapa HOM05D003173 ORTHO05D003546 4.4e-85 318.5 259 69.1
BcaC05g25935 Brassica carinata HOM05D003173 ORTHO05D003546 7.5e-85 317.8 258 69.0
C05p18890 Brassica napus HOM05D003173 ORTHO05D003546 7.5e-85 317.8 258 69.0
BolC5t30588H Brassica oleracea HOM05D003173 ORTHO05D003546 1.7e-84 316.6 258 69.0
A07p15840 Brassica napus HOM05D003173 ORTHO05D003546 9.2e-83 310.8 255 69.0
BraA07t29310Z Brassica rapa HOM05D003173 ORTHO05D003546 9.2e-83 310.8 255 69.0
AL1G33140 Arabidopsis lyrata HOM05D003173 ORTHO05D003546 2.1e-82 309.7 238 73.1
AT1G20310 Arabidopsis thaliana HOM05D003173 ORTHO05D003546 7.8e-82 307.8 254 69.7
Carub.0001s1981 Capsella rubella HOM05D003173 ORTHO05D003546 3.4e-77 292.4 257 66.9
BcaB03g14324 Brassica carinata HOM05D003173 ORTHO05D003546 7.1e-75 284.6 254 66.9
CARHR020790 Cardamine hirsuta HOM05D003173 ORTHO05D003546 2.3e-73 279.6 250 66.4
A07p15740 Brassica napus HOM05D003173 ORTHO05D003546 3.9e-73 278.9 228 68.0
Sp5g31190 Schrenkiella parvula HOM05D003173 ORTHO05D003546 3.1e-54 216.1 266 51.1
Carub.0002s2296 Capsella rubella HOM05D003173 ORTHO05D003546 4.9e-52 208.8 257 51.0
AL2G36110 Arabidopsis lyrata HOM05D003173 ORTHO05D003546 4.6e-50 202.2 273 47.3
AT1G76070 Arabidopsis thaliana HOM05D003173 ORTHO05D003546 4.6e-50 202.2 268 48.1
CARHR069610 Cardamine hirsuta HOM05D003173 ORTHO05D003546 7.9e-50 201.4 256 50.0
Thhalv10018992m.g Eutrema salsugineum HOM05D003173 ORTHO05D003546 1.9e-48 196.8 272 48.9
Aa31LG7G4670 Aethionema arabicum HOM05D003173 ORTHO05D003546 1.1e-46 191.0 215 54.0
BraA02t07073Z Brassica rapa HOM05D003173 ORTHO05D003546 7.6e-45 184.9 248 48.8
BcaC08g47100 Brassica carinata HOM05D003173 ORTHO05D003546 4.9e-44 182.2 259 47.1
BraA07t31692Z Brassica rapa HOM05D003173 ORTHO05D003546 2.5e-43 179.9 257 45.9
BolC6t40040H Brassica oleracea HOM05D003173 ORTHO05D003546 5.5e-43 178.7 258 46.9
A07p41630 Brassica napus HOM05D003173 ORTHO05D003546 2.7e-42 176.4 258 45.7
Aa31LG4G6190 Aethionema arabicum HOM05D003173 ORTHO05D003546 1.8e-41 173.7 282 41.5
A02p20410 Brassica napus HOM05D003173 ORTHO05D003546 3.0e-41 172.9 259 45.6
C02p33480 Brassica napus HOM05D003173 ORTHO05D003546 5.7e-40 168.7 256 44.9
BolC2t09356H Brassica oleracea HOM05D003173 ORTHO05D003546 5.7e-40 168.7 256 44.9
BcaC03g15643 Brassica carinata HOM05D003173 ORTHO05D003546 7.4e-40 168.3 256 44.9
THA.LOC104811444 Tarenaya hassleriana HOM05D003173 ORTHO05D003546 2.0e-37 160.2 258 41.5
BcaB01g00240 Brassica carinata HOM05D003173 ORTHO05D003546 2.2e-36 156.8 155 63.9
BcaC08g47302 Brassica carinata HOM05D003173 ORTHO05D003546 2.5e-35 153.3 259 43.2
BcaB05g24968 Brassica carinata HOM05D003173 ORTHO05D003546 2.7e-34 149.8 246 44.3
C06p50010 Brassica napus HOM05D003173 ORTHO05D003546 5.3e-30 135.6 205 44.9
COL.COLO4_26083 Corchorus olitorius HOM05D003173 ORTHO05D003546 1.0e-28 131.3 252 39.3
Thecc.08G051800 Theobroma cacao HOM05D003173 ORTHO05D003546 1.1e-27 127.9 261 39.1
TAR376G0945 Trochodendron aralioides HOM05D003173 ORTHO05D003546 2.7e-26 123.2 253 36.8
CiPaw.07G143600 Carya illinoinensis HOM05D003173 ORTHO05D003546 1.8e-25 120.6 269 35.3
Gorai.009G191200 Gossypium raimondii HOM05D003173 ORTHO05D003546 1.8e-25 120.6 267 37.5
Gohir.A05G182800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 3.0e-25 119.8 266 36.5
Duzib116G0616 Durio zibethinus HOM05D003173 ORTHO05D003546 3.9e-25 119.4 262 37.0
Duzib093G0730 Durio zibethinus HOM05D003173 ORTHO05D003546 6.7e-25 118.6 261 37.5
Manes.18G009300 Manihot esculenta HOM05D003173 ORTHO05D003546 6.7e-25 118.6 272 37.9
Gorai.009G268900 Gossypium raimondii HOM05D003173 ORTHO05D003546 8.8e-25 118.2 250 36.0
Gohir.A05G255800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 2.6e-24 116.7 263 34.2
Gohir.D05G257500 Gossypium hirsutum HOM05D003173 ORTHO05D003546 3.3e-24 116.3 262 34.4
Aqoxy6G01958 Aquilegia oxysepala HOM05D003173 ORTHO05D003546 4.4e-24 115.9 247 34.0
Gohir.D05G185800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 7.4e-24 115.2 267 36.7
Migut.N03186 Erythranthe guttata HOM05D003173 ORTHO05D003546 9.7e-24 114.8 257 36.6
Peaxi162Scf00174g00083 Petunia axillaris HOM05D003173 ORTHO05D003546 8.2e-23 111.7 256 36.7
Peaxi162Scf00744g00026 Petunia axillaris HOM05D003173 ORTHO05D003546 8.2e-23 111.7 257 37.0
Solyc04g081960.1 Solanum lycopersicum HOM05D003173 ORTHO05D003546 8.2e-23 111.7 257 35.4
MSTRG.24229 Avicennia marina HOM05D003173 ORTHO05D003546 1.1e-22 111.3 259 38.2
TAR381G1677 Trochodendron aralioides HOM05D003173 ORTHO05D003546 1.1e-22 111.3 257 38.1
TWI12G1263 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 1.8e-22 110.5 256 33.6
Psat6g001080 Pisum sativum HOM05D003173 ORTHO05D003546 2.4e-22 110.2 257 33.1
Nn6g31907 Nelumbo nucifera HOM05D003173 ORTHO05D003546 5.3e-22 109.0 251 33.5
Medtr1g026110 Medicago truncatula HOM05D003173 ORTHO05D003546 2.6e-21 106.7 256 32.0
Potri.002G016500 Populus trichocarpa HOM05D003173 ORTHO05D003546 2.6e-21 106.7 267 36.0
TAR628G1607 Trochodendron aralioides HOM05D003173 ORTHO05D003546 2.6e-21 106.7 252 35.7
CSS0028811 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 3.4e-21 106.3 229 34.9
Cc10_g01130 Coffea canephora HOM05D003173 ORTHO05D003546 3.4e-21 106.3 279 35.8
Sopen04g035610 Solanum pennellii HOM05D003173 ORTHO05D003546 3.4e-21 106.3 261 35.2
Actinidia15462 Actinidia chinensis HOM05D003173 ORTHO05D003546 5.9e-21 105.5 251 35.1
QL02p012938 Quercus lobata HOM05D003173 ORTHO05D003546 5.9e-21 105.5 265 32.8
Haze_22703 Corylus avellana HOM05D003173 ORTHO05D003546 1.3e-20 104.4 269 33.8
PGSC0003DMG400009955 Solanum tuberosum HOM05D003173 ORTHO05D003546 1.7e-20 104.0 267 33.3
Actinidia29769 Actinidia chinensis HOM05D000228 ORTHO05D001545 2.2e-20 103.6 245 35.1
CSS0021479 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 2.2e-20 103.6 227 32.6
Cfa014008 Carpinus fangiana HOM05D003173 ORTHO05D003546 2.2e-20 103.6 261 35.2
Cpa.g.sc26.264 Carica papaya HOM05D003173 ORTHO05D003546 2.9e-20 103.2 267 34.1
CiPaw.08G069200 Carya illinoinensis HOM05D003173 ORTHO05D003546 2.9e-20 103.2 269 35.3
Sabra02G0013200 Salix brachista HOM05D003173 ORTHO05D003546 2.9e-20 103.2 261 36.8
TWI56G0288 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 2.9e-20 103.2 258 33.3
PGR031G0086 Punica granatum HOM05D003173 ORTHO05D003546 3.8e-20 102.8 273 32.6
Peaxi162Scf00064g00081 Petunia axillaris HOM05D003173 ORTHO05D003546 6.5e-20 102.1 262 32.8
CANSAT25G2829 Cannabis sativa HOM05D003173 ORTHO05D003546 8.5e-20 101.7 270 31.9
ECA233G2815 Erigeron canadensis HOM05D003173 ORTHO05D003546 8.5e-20 101.7 259 30.5
Glyma.06G020800 Glycine max HOM05D003173 ORTHO05D003546 8.5e-20 101.7 270 33.3
Nitab4.5_0002353g0090 Nicotiana tabacum HOM05D003173 ORTHO05D003546 1.4e-19 100.9 261 32.6
Nitab4.5_0000498g0080 Nicotiana tabacum HOM05D003173 ORTHO05D003546 1.9e-19 100.5 256 32.0
Lsat_1_v5_gn_8_29221 Lactuca sativa HOM05D003173 ORTHO05D003546 3.2e-19 99.8 299 30.4
CSS0006148 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 4.2e-19 99.4 257 35.4
Glyma.14G222400 Glycine max HOM05D003173 ORTHO05D003546 5.5e-19 99.0 261 34.1
MBI09_g01020_MAGBIO Magnolia biondii HOM05D003173 ORTHO05D003546 5.5e-19 99.0 255 36.1
Atru.chr13.216 Acer truncatum HOM05D003173 ORTHO05D003546 7.2e-19 98.6 295 32.5
Ciclev10002153m.g Citrus clementina HOM05D003173 ORTHO05D003546 7.2e-19 98.6 279 31.9
CDE05G3154 Ceratophyllum demersum HOM05D001535 ORTHO05D003710 9.4e-19 98.2 247 34.0
MELO3C003727.2 Cucumis melo HOM05D003173 ORTHO05D003546 9.4e-19 98.2 249 32.9
Nn5g30846 Nelumbo nucifera HOM05D003173 ORTHO05D003546 9.4e-19 98.2 252 33.3
arahy.Tifrunner.gnm1.ann1.WLLD0D Arachis hypogaea HOM05D003173 ORTHO05D003546 1.2e-18 97.8 260 32.3
vmacro04379 Vaccinium macrocarpon HOM05D003173 ORTHO05D003546 1.2e-18 97.8 265 34.3
Lsat_1_v5_gn_2_6961 Lactuca sativa HOM05D003173 ORTHO05D003546 1.6e-18 97.4 280 30.7
Glyma.04G020700 Glycine max HOM05D003173 ORTHO05D003546 2.1e-18 97.1 273 32.2
Oeu026120.1 Olea europaea HOM05D003173 ORTHO05D003546 2.1e-18 97.1 242 33.9
Lalb_Chr03g0033561 Lupinus albus HOM05D003173 ORTHO05D003546 3.6e-18 96.3 269 30.1
HanXRQChr14g0428491 Helianthus annuus HOM05D003173 ORTHO05D003546 4.7e-18 95.9 243 32.1
Medtr3g114750 Medicago truncatula HOM05D003173 ORTHO05D003546 4.7e-18 95.9 245 30.6
arahy.Tifrunner.gnm1.ann1.S3QWAM Arachis hypogaea HOM05D003173 ORTHO05D003546 6.1e-18 95.5 275 31.6
Phvul.009G019900 Phaseolus vulgaris HOM05D003173 ORTHO05D003546 6.1e-18 95.5 269 33.5
Sabra05G0189700 Salix brachista HOM05D003173 ORTHO05D003546 6.1e-18 95.5 266 32.7
TPR.G26427 Trifolium pratense HOM05D003173 ORTHO05D003546 6.1e-18 95.5 240 32.5
VMungo0647G1822 Vigna mungo HOM05D003173 ORTHO05D003546 6.1e-18 95.5 261 34.1
arahy.Tifrunner.gnm1.ann1.YK013F Arachis hypogaea HOM05D003173 ORTHO05D003546 8.0e-18 95.1 275 31.6
EL10Ac1g02082 Beta vulgaris HOM05D003173 ORTHO05D003546 8.0e-18 95.1 284 30.6
Ca_13485_v3 Cicer arietinum L. HOM05D003173 ORTHO05D003546 1.0e-17 94.7 251 31.5
Lalb_Chr19g0131611 Lupinus albus HOM05D003173 ORTHO05D003546 1.0e-17 94.7 288 30.9
Manes.05G142500 Manihot esculenta HOM05D003173 ORTHO05D003546 1.0e-17 94.7 261 32.6
Prupe.1G359400 Prunus persica HOM05D003173 ORTHO05D003546 1.4e-17 94.4 260 34.6
Rhsim06G0012200 Rhododendron simsii HOM05D003173 ORTHO05D003546 1.8e-17 94.0 253 33.2
BcaC08g47295 Brassica carinata HOM05D003173 ORTHO05D003546 2.3e-17 93.6 133 45.1
Solyc12g094390.1 Solanum lycopersicum HOM05D003173 ORTHO05D003546 2.3e-17 93.6 259 32.0
Lalb_Chr23g0265991 Lupinus albus HOM05D003173 ORTHO05D003546 3.0e-17 93.2 246 33.3
PSO541G5041 Papaver somniferum HOM05D003173 ORTHO05D003546 3.0e-17 93.2 251 32.3
Phvul.001G002200 Phaseolus vulgaris HOM05D003173 ORTHO05D003546 3.0e-17 93.2 256 34.0
DCAR_016740 Daucus carota HOM05D000228 ORTHO05D001545 3.9e-17 92.8 285 30.9
Dinv31893 Davidia involucrata HOM05D003173 ORTHO05D003546 3.9e-17 92.8 253 34.0
Sopen12g031280 Solanum pennellii HOM05D003173 ORTHO05D003546 6.7e-17 92.0 268 32.1
PGSC0003DMG400029419 Solanum tuberosum HOM05D003173 ORTHO05D003546 8.8e-17 91.7 265 31.7
Glyma.17G261300 Glycine max HOM05D003173 ORTHO05D003546 1.1e-16 91.3 236 31.8
FAN15G3480 Fragaria x ananassa HOM05D003173 ORTHO05D003546 1.5e-16 90.9 270 35.6
Oeu051144.1 Olea europaea HOM05D003173 ORTHO05D003546 1.5e-16 90.9 262 31.3
Hma1.2p1_0023F.1_g015790 Hydrangea macrophylla HOM05D003173 ORTHO05D003546 2.0e-16 90.5 245 33.1
VMungo1309G1265 Vigna mungo HOM05D003173 ORTHO05D003546 3.3e-16 89.7 263 31.6
FAN20G0850 Fragaria x ananassa HOM05D003173 ORTHO05D003546 7.4e-16 88.6 270 34.1
SGA_v2.0_scaffold19G08585 Striga asiatica HOM05D003173 ORTHO05D003546 7.4e-16 88.6 256 32.8
FAN27G2702 Fragaria x ananassa HOM05D003173 ORTHO05D003546 1.3e-15 87.8 270 34.4
TPR.G38194 Trifolium pratense HOM05D003173 ORTHO05D003546 1.7e-15 87.4 244 32.8
FvH4_2g37950 Fragaria vesca HOM05D003173 ORTHO05D003546 2.8e-15 86.7 272 33.1
Sc15g0004670 Simmondsia chinensis HOM05D003173 ORTHO05D003546 3.7e-15 86.3 252 34.9
Potri.005G245600 Populus trichocarpa HOM05D003173 ORTHO05D003546 4.8e-15 85.9 267 30.7
Lalb_Chr08g0246301 Lupinus albus HOM05D003173 ORTHO05D003546 8.2e-15 85.1 189 32.8
CAN.G401.21 Capsicum annuum HOM05D003173 ORTHO05D003546 1.1e-14 84.7 270 28.5
Dinv39556 Davidia involucrata HOM05D003173 ORTHO05D003546 1.8e-14 84.0 223 34.5
ECA238G0569 Erigeron canadensis HOM05D000315 ORTHO05D000527 1.8e-14 84.0 263 28.5
Migut.C00894 Erythranthe guttata HOM05D003173 ORTHO05D003546 2.4e-14 83.6 253 34.4
ClCG05G015410 Citrullus lanatus HOM05D003173 ORTHO05D003546 5.3e-14 82.4 249 30.5
RcHm_v2.0_Chr6g0303671 Rosa chinensis HOM05D003173 ORTHO05D003546 7.0e-14 82.0 267 34.5
DCAR_009512 Daucus carota HOM05D003173 ORTHO05D003546 1.6e-13 80.9 258 31.4
SalBow7G1496 Salvia bowleyana HOM05D003173 ORTHO05D003546 2.0e-13 80.5 248 30.2
Eucgr.J02492 Eucalyptus grandis HOM05D003173 ORTHO05D003546 5.9e-13 79.0 254 33.9
Nitab4.5_0003030g0080 Nicotiana tabacum HOM05D003173 ORTHO05D003546 7.7e-13 78.6 204 34.8
Oeu057579.1 Olea europaea HOM05D003173 ORTHO05D003546 1.0e-12 78.2 217 31.8
SHI05037 Sapria himalayana HOM05D003173 ORTHO05D003546 1.0e-12 78.2 224 30.8
PSO675G7160 Papaver somniferum HOM05D003173 ORTHO05D003546 2.9e-12 76.6 255 29.4
CsaV3_3G046130 Cucumis sativus L. HOM05D003173 ORTHO05D003546 3.8e-12 76.3 175 34.3
SHI08021 Sapria himalayana HOM05D003173 ORTHO05D003546 3.8e-12 76.3 219 30.6
Lj5g0013533 Lotus japonicus HOM05D003173 ORTHO05D003546 6.5e-12 75.5 260 28.1
Actinidia37954 Actinidia chinensis HOM05D003173 ORTHO05D003546 8.5e-12 75.1 179 33.5
Oeu039861.1 Olea europaea HOM05D003173 ORTHO05D003546 1.1e-11 74.7 191 32.5
ATR0661G366 Amborella trichopoda HOM05D003173 ORTHO05D003546 3.2e-11 73.2 262 30.9
unitig_32.g11393 Utricularia gibba HOM05D002221 ORTHO05D002626 4.2e-11 72.8 228 29.4
Psat5g012200 Pisum sativum HOM05D003173 ORTHO05D003546 5.5e-11 72.4 251 30.3
SHI13075 Sapria himalayana HOM05D003173 ORTHO05D003546 1.2e-10 71.2 220 29.5
HPP92_002481 Vanilla planifolia HOM05D003173 ORTHO05D003546 1.2e-10 71.2 213 28.2
CDE05G2702 Ceratophyllum demersum HOM05D003173 ORTHO05D003546 2.7e-10 70.1 194 30.4
TWI73G0798 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 2.7e-10 70.1 238 32.8
PGR102G2057 Punica granatum HOM05D003173 ORTHO05D003546 8.0e-10 68.6 234 30.8
DCAR_025088 Daucus carota HOM05D003173 ORTHO05D003546 1.4e-09 67.8 257 28.4
unitig_748.g7605 Utricularia gibba HOM05D003173 ORTHO05D003546 8.8e-09 65.1 209 29.2
Lalb_Chr01g0008491 Lupinus albus HOM05D003173 ORTHO05D003546 3.3e-08 63.2 229 31.0
Zm00001eb331720 Zea mays HOM05D003173 ORTHO05D003546 3.3e-08 63.2 172 34.3
Gohir.D12G058500 Gossypium hirsutum HOM05D003173 ORTHO05D003546 5.7e-08 62.4 208 31.2
Os09g0542900 Oryza sativa ssp. japonica HOM05D003173 ORTHO05D003546 7.5e-08 62.0 219 30.1
Potri.005G107500 Populus trichocarpa HOM05D003173 ORTHO05D003546 2.2e-07 60.5 248 28.2
Duzib264G0532 Durio zibethinus HOM05D003173 ORTHO05D003546 6.3e-07 58.9 242 28.5
Sed0006911 Sechium edule HOM05D003173 ORTHO05D003546 6.3e-07 58.9 194 30.4
GSVIVG01008738001 Vitis vinifera HOM05D003173 ORTHO05D003546 6.3e-07 58.9 135 37.8
Gorai.008G061700 Gossypium raimondii HOM05D003173 ORTHO05D003546 8.2e-07 58.5 208 31.7
COL.COLO4_22498 Corchorus olitorius HOM05D003173 ORTHO05D003546 1.1e-06 58.2 131 36.6
Gohir.A12G058500 Gossypium hirsutum HOM05D003173 ORTHO05D003546 1.4e-06 57.8 207 30.9
HanXRQChr12g0366681 Helianthus annuus HOM05D003173 ORTHO05D003546 1.4e-06 57.8 241 27.8
Zm00001eb103980 Zea mays HOM05D003173 ORTHO05D003546 3.1e-06 56.6 265 28.7
Lj2g0017226 Lotus japonicus HOM05D003173 ORTHO05D003546 7.0e-06 55.5 128 31.2
Hma1.2p1_1598F.1_g292960 Hydrangea macrophylla HOM05D003173 ORTHO05D003546 9.1e-06 55.1 204 27.5


User provided reference genes

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