Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g17670 Schrenkiella parvula HOM05D004047 ORTHO05D004772 0.0e+00 1345.1 779 100.0
Thhalv10006839m.g Eutrema salsugineum HOM05D004047 ORTHO05D004772 0.0e+00 1100.9 800 81.2
AL1G32600 Arabidopsis lyrata HOM05D004047 ORTHO05D004772 2.5e-296 1021.9 805 76.8
BcaB07g32005 Brassica carinata HOM05D004047 ORTHO05D004772 1.9e-288 995.7 781 76.3
AT1G19870 Arabidopsis thaliana HOM05D004047 ORTHO05D004772 4.2e-283 978.0 807 75.1
A06p16070 Brassica napus HOM05D004047 ORTHO05D004772 1.6e-282 976.1 794 75.1
BraA06t24713Z Brassica rapa HOM05D004047 ORTHO05D004772 3.3e-280 968.4 793 74.7
BcaC07g39006 Brassica carinata HOM05D004047 ORTHO05D004772 1.4e-273 946.4 793 74.4
BolC8t49616H Brassica oleracea HOM05D004047 ORTHO05D004772 1.5e-272 943.0 793 74.4
C08p19780 Brassica napus HOM05D004047 ORTHO05D004772 2.9e-268 928.7 784 74.1
Carub.0001s1939 Capsella rubella HOM05D004047 ORTHO05D004772 3.2e-267 925.2 803 74.6
BcaC05g25881 Brassica carinata HOM05D004047 ORTHO05D004772 8.0e-266 920.6 793 71.2
C05p18380 Brassica napus HOM05D004047 ORTHO05D004772 8.0e-266 920.6 793 71.2
BolC5t30548H Brassica oleracea HOM05D004047 ORTHO05D004772 8.0e-266 920.6 793 71.2
A08p29630 Brassica napus HOM05D004047 ORTHO05D004772 6.7e-265 917.5 789 72.4
BcaB03g12894 Brassica carinata HOM05D004047 ORTHO05D004772 1.1e-259 900.2 765 72.0
CARHR020370 Cardamine hirsuta HOM05D004047 ORTHO05D004772 3.2e-259 898.7 794 70.5
Aa31LG7G4370 Aethionema arabicum HOM05D004047 ORTHO05D003043 5.8e-232 808.1 806 64.1
THA.LOC104813799 Tarenaya hassleriana HOM05D004047 ORTHO05D004772 1.4e-145 521.2 830 47.6
THA.LOC104811392 Tarenaya hassleriana HOM05D004047 ORTHO05D004772 3.8e-143 513.1 831 49.0
Atru.chr13.329 Acer truncatum HOM05D004047 ORTHO05D004772 3.3e-86 323.9 889 35.7
Potri.002G025200 Populus trichocarpa HOM05D004047 ORTHO05D004772 3.3e-86 323.9 886 35.6
Manes.18G016100 Manihot esculenta HOM05D004047 ORTHO05D004772 5.6e-86 323.2 892 35.4
Potri.005G236200 Populus trichocarpa HOM05D004047 ORTHO05D004772 1.8e-84 318.2 877 34.8
Ciclev10000295m.g Citrus clementina HOM05D004047 ORTHO05D004772 5.8e-83 313.2 881 35.9
Cfa013920 Carpinus fangiana HOM05D004047 ORTHO05D004772 1.7e-82 311.6 887 33.7
Dinv31823 Davidia involucrata HOM05D004047 ORTHO05D004772 9.3e-81 305.8 918 32.8
Cpa.g.sc26.21 Carica papaya HOM05D004047 ORTHO05D004772 1.8e-79 301.6 959 33.2
RcHm_v2.0_Chr6g0302451 Rosa chinensis HOM05D004047 ORTHO05D004772 3.6e-77 293.9 866 35.1
Duzib116G0032 Durio zibethinus HOM05D004047 ORTHO05D004772 1.1e-76 292.4 882 33.8
TAR381G0884 Trochodendron aralioides HOM05D004047 ORTHO05D004772 2.4e-76 291.2 875 33.5
Haze_22603 Corylus avellana HOM05D004047 ORTHO05D004772 3.1e-76 290.8 879 35.4
Gohir.D01G099500 Gossypium hirsutum HOM05D004047 ORTHO05D004772 5.3e-76 290.0 882 32.3
Gorai.002G124800 Gossypium raimondii HOM05D004047 ORTHO05D004772 5.3e-76 290.0 882 32.4
Gohir.A01G112700 Gossypium hirsutum HOM05D004047 ORTHO05D004772 2.9e-74 284.3 883 32.0
Actinidia15402 Actinidia chinensis HOM05D004047 ORTHO05D004772 4.9e-74 283.5 901 34.5
Prupe.1G369000 Prunus persica HOM05D004047 ORTHO05D004772 6.4e-74 283.1 878 35.0
PGR083G1283 Punica granatum HOM05D004047 ORTHO05D004772 1.9e-73 281.6 875 33.0
CSS0029692 Camellia sinensis var. sinensis HOM05D004047 ORTHO05D004772 3.2e-73 280.8 880 34.4
Sabra05G0182600 Salix brachista HOM05D004047 ORTHO05D004772 3.2e-73 280.8 864 33.4
Sabra02G0020200 Salix brachista HOM05D004047 ORTHO05D004772 7.1e-73 279.6 913 33.3
TWI12G0119 Tripterygium wilfordii HOM05D004047 ORTHO05D004772 1.2e-72 278.9 879 33.7
Duzib093G0674 Durio zibethinus HOM05D004047 ORTHO05D004772 2.1e-72 278.1 886 33.5
Lj5g0017583 Lotus japonicus HOM05D004047 ORTHO05D004772 2.3e-71 274.6 877 33.6
CANSAT25G0097 Cannabis sativa HOM05D004047 ORTHO05D004772 3.9e-71 273.9 935 33.0
Nn5g29267 Nelumbo nucifera HOM05D004047 ORTHO05D004772 3.9e-71 273.9 896 32.7
Eucgr.F01629 Eucalyptus grandis HOM05D004047 ORTHO05D004772 5.1e-71 273.5 880 33.2
FvH4_2g38820 Fragaria vesca HOM05D004047 ORTHO05D004772 2.5e-70 271.2 855 34.3
Medtr1g023760 Medicago truncatula HOM05D004047 ORTHO05D004772 4.3e-70 270.4 866 34.2
Duzib041G0005 Durio zibethinus HOM05D004047 ORTHO05D004772 9.6e-70 269.2 882 32.8
Migut.C00820 Erythranthe guttata HOM05D004047 ORTHO05D004772 9.6e-70 269.2 843 32.4
FAN27G1251 Fragaria x ananassa HOM05D004047 ORTHO05D004772 1.3e-69 268.9 857 33.8
TWI56G0272 Tripterygium wilfordii HOM05D004047 ORTHO05D004772 3.7e-69 267.3 885 33.8
Aqoxy6G02326 Aquilegia oxysepala HOM05D004047 ORTHO05D004772 4.0e-68 263.8 895 31.8
QL02p010984 Quercus lobata HOM05D004047 ORTHO05D004772 4.0e-68 263.8 879 33.4
Nn6g32284 Nelumbo nucifera HOM05D004047 ORTHO05D004772 5.3e-68 263.5 890 33.1
DCAR_022438 Daucus carota HOM05D004047 ORTHO05D004772 2.0e-67 261.5 861 31.9
Oeu054711.1 Olea europaea HOM05D004047 ORTHO05D004772 4.5e-67 260.4 890 31.5
Psat6g004160 Pisum sativum HOM05D004047 ORTHO05D004772 4.5e-67 260.4 869 32.9
FAN15G3510 Fragaria x ananassa HOM05D004047 ORTHO05D004772 2.9e-66 257.7 849 33.5
Sopen04g034820 Solanum pennellii HOM05D004047 ORTHO05D004772 2.9e-66 257.7 909 33.3
SGA_v2.0_scaffold92G28267 Striga asiatica HOM05D004047 ORTHO05D004772 3.8e-66 257.3 828 33.3
PGSC0003DMG400003722 Solanum tuberosum HOM05D004047 ORTHO05D004772 8.4e-66 256.1 898 32.1
arahy.Tifrunner.gnm1.ann1.GHU3Y0 Arachis hypogaea HOM05D004047 ORTHO05D004772 1.9e-65 255.0 854 33.5
Sc02g0008420 Simmondsia chinensis HOM05D004047 ORTHO05D004772 1.9e-65 255.0 820 33.7
FAN20G0280 Fragaria x ananassa HOM05D004047 ORTHO05D004772 3.2e-65 254.2 847 32.7
Glyma.06G025800 Glycine max HOM05D004047 ORTHO05D004772 5.5e-65 253.4 933 32.3
Lalb_Chr11g0062011 Lupinus albus HOM05D004047 ORTHO05D004772 5.5e-65 253.4 866 31.3
Nitab4.5_0005185g0030 Nicotiana tabacum HOM05D004047 ORTHO05D004772 5.5e-65 253.4 892 31.4
arahy.Tifrunner.gnm1.ann1.261ZZU Arachis hypogaea HOM05D004047 ORTHO05D004772 7.1e-65 253.1 855 33.0
Solyc04g081210.4 Solanum lycopersicum HOM05D004047 ORTHO05D004772 1.2e-64 252.3 905 32.7
Actinidia16963 Actinidia chinensis HOM05D004047 ORTHO05D004772 1.6e-64 251.9 866 32.4
HanXRQChr04g0101151 Helianthus annuus HOM05D004047 ORTHO05D004772 3.5e-64 250.8 818 32.6
Phvul.009G015200 Phaseolus vulgaris HOM05D004047 ORTHO05D004772 1.0e-63 249.2 916 32.3
MD15G1014800 Malus domestica HOM05D004047 ORTHO05D004772 1.3e-63 248.8 805 32.3
MBI05_g26515_MAGBIO Magnolia biondii HOM05D004047 ORTHO05D004772 3.9e-63 247.3 894 30.9
Gohir.A05G188000 Gossypium hirsutum HOM05D004047 ORTHO05D004772 5.1e-63 246.9 966 31.3
VMungo1309G2404 Vigna mungo HOM05D004047 ORTHO05D004772 8.7e-63 246.1 920 31.4
Ca_13402_v3 Cicer arietinum L. HOM05D004047 ORTHO05D004772 1.9e-62 245.0 858 32.3
Ca_13415_v3 Cicer arietinum L. HOM05D004047 ORTHO05D004772 1.9e-62 245.0 858 32.3
Ca_29786_v3 Cicer arietinum L. HOM05D004047 ORTHO05D004772 1.9e-62 245.0 858 32.3
Peaxi162Scf00287g01716 Petunia axillaris HOM05D004047 ORTHO05D004772 2.5e-62 244.6 884 31.0
Cc10_g01950 Coffea canephora HOM05D004047 ORTHO05D004772 5.7e-62 243.4 891 31.3
Gorai.009G196200 Gossypium raimondii HOM05D004047 ORTHO05D004772 2.8e-61 241.1 965 30.1
CAN.G1271.11 Capsicum annuum HOM05D004047 ORTHO05D004772 4.8e-61 240.4 899 30.9
Lj4A794G38 Lonicera japonica HOM05D004047 ORTHO05D004772 4.8e-61 240.4 809 32.3
ClCG08G014420 Citrullus lanatus HOM05D004047 ORTHO05D004772 8.2e-61 239.6 894 30.6
Gohir.D05G191000 Gossypium hirsutum HOM05D004047 ORTHO05D004772 1.4e-60 238.8 964 30.3
Hma1.2p1_2476F.1_g322840 Hydrangea macrophylla HOM05D004047 ORTHO05D004772 1.4e-60 238.8 828 32.5
Lalb_Chr14g0369751 Lupinus albus HOM05D004047 ORTHO05D004772 2.4e-60 238.0 892 33.3
arahy.Tifrunner.gnm1.ann1.D2JYDS Arachis hypogaea HOM05D004047 ORTHO05D004772 4.1e-60 237.3 826 31.7
EL10Ac1g02250 Beta vulgaris HOM05D004047 ORTHO05D004772 9.0e-60 236.1 888 30.4
TAR376G1182 Trochodendron aralioides HOM05D004047 ORTHO05D004772 9.0e-60 236.1 1007 30.8
arahy.Tifrunner.gnm1.ann1.7CTW4M Arachis hypogaea HOM05D004047 ORTHO05D004772 1.5e-59 235.3 828 31.5
Gohir.A06G005600 Gossypium hirsutum HOM05D004047 ORTHO05D004772 5.9e-59 233.4 800 31.9
Gohir.D06G001400 Gossypium hirsutum HOM05D004047 ORTHO05D004772 1.3e-58 232.3 799 31.5
Rhsim07G0245700 Rhododendron simsii HOM05D004047 ORTHO05D004772 2.2e-58 231.5 892 30.5
DCAR_009937 Daucus carota HOM05D004047 ORTHO05D004772 2.9e-58 231.1 842 31.0
CiPaw.08G064100 Carya illinoinensis HOM05D004047 ORTHO05D004772 8.5e-58 229.6 653 34.6
Gorai.010G005800 Gossypium raimondii HOM05D004047 ORTHO05D004772 8.5e-58 229.6 784 31.1
PSO675G6151 Papaver somniferum HOM05D004047 ORTHO05D004772 8.5e-58 229.6 890 31.2
Ah.11g039490 Amaranthus hybridus HOM05D004047 ORTHO05D004772 1.1e-57 229.2 880 31.8
Thecc.08G040700 Theobroma cacao HOM05D004047 ORTHO05D004772 1.1e-57 229.2 630 37.9
PSO541G1521 Papaver somniferum HOM05D004047 ORTHO05D004772 3.2e-57 227.6 886 30.9
Lalb_Chr08g0246131 Lupinus albus HOM05D004047 ORTHO05D004772 1.6e-56 225.3 886 29.8
CsaV3_3G045640 Cucumis sativus L. HOM05D004047 ORTHO05D004772 1.0e-55 222.6 877 30.3
SGA_v2.0_scaffold11G05888 Striga asiatica HOM05D004047 ORTHO05D004772 1.0e-55 222.6 837 31.1
Nitab4.5_0001242g0060 Nicotiana tabacum HOM05D004047 ORTHO05D004772 2.3e-55 221.5 849 30.7
CsaV3_2G029380 Cucumis sativus L. HOM05D004047 ORTHO05D004772 5.1e-55 220.3 911 28.8
MSTRG.25224 Avicennia marina HOM05D004047 ORTHO05D004772 8.7e-55 219.5 883 31.3
MELO3C010997.2 Cucumis melo HOM05D004047 ORTHO05D004772 1.9e-54 218.4 905 28.7
Peaxi162Scf00186g00119 Petunia axillaris HOM05D004047 ORTHO05D004772 2.5e-54 218.0 823 30.6
HanXRQChr13g0387331 Helianthus annuus HOM05D004047 ORTHO05D004772 3.3e-54 217.6 927 31.3
Lsat_1_v5_gn_8_31420 Lactuca sativa HOM05D004047 ORTHO05D004772 4.3e-54 217.2 840 31.8
SalBow7G0720 Salvia bowleyana HOM05D004047 ORTHO05D004772 9.7e-54 216.1 827 29.7
AUR62035714 Chenopodium quinoa HOM05D004047 ORTHO05D004772 1.3e-53 215.7 984 28.0
Hund05219 Selenicereus undatus HOM05D004047 ORTHO05D004772 2.2e-53 214.9 943 31.2
Sed0024056 Sechium edule HOM05D004047 ORTHO05D004772 2.8e-53 214.5 886 28.1
ClCG05G018530 Citrullus lanatus HOM05D004047 ORTHO05D004772 1.1e-52 212.6 872 31.5
Aqoxy5G01461 Aquilegia oxysepala HOM05D004047 ORTHO05D004772 1.4e-52 212.2 904 29.3
Nitab4.5_0005489g0020 Nicotiana tabacum HOM05D004047 ORTHO05D004772 5.3e-52 210.3 701 32.8
ECA238G1430 Erigeron canadensis HOM05D004047 ORTHO05D004772 7.7e-51 206.5 721 31.6
ECA233G3940 Erigeron canadensis HOM05D004047 ORTHO05D004772 5.5e-49 200.3 935 29.4
CDE02G3574 Ceratophyllum demersum HOM05D004047 ORTHO05D004772 1.6e-48 198.7 856 29.7
HanXRQChr12g0367641 Helianthus annuus HOM05D004047 ORTHO05D004772 1.6e-48 198.7 895 28.6
MD08G1015800 Malus domestica HOM05D004047 ORTHO05D004772 6.1e-48 196.8 1005 27.7
CSS0011131 Camellia sinensis var. sinensis HOM05D004047 ORTHO05D004772 1.0e-47 196.1 958 28.6
SalBow8G2734 Salvia bowleyana HOM05D004047 ORTHO05D004772 3.0e-47 194.5 859 31.7
HanXRQChr14g0431291 Helianthus annuus HOM05D004047 ORTHO05D004772 3.3e-46 191.0 819 29.7
Dinv39496 Davidia involucrata HOM05D004047 ORTHO05D004772 9.7e-46 189.5 616 31.7
Lj4C28G12 Lonicera japonica HOM05D004047 ORTHO05D003043 1.2e-43 182.6 607 31.5
AUR62035431 Chenopodium quinoa HOM05D004047 ORTHO05D004772 2.0e-43 181.8 988 28.7
Sed0015722 Sechium edule HOM05D004047 ORTHO05D004772 5.0e-42 177.2 879 29.2
GSVIVG01009858001 Vitis vinifera HOM05D004047 ORTHO05D004772 1.9e-41 175.3 564 32.8
Oeu027553.1 Olea europaea HOM05D004047 ORTHO05D004772 4.7e-40 170.6 640 30.9
CDE04G1192 Ceratophyllum demersum HOM05D004047 ORTHO05D004772 2.3e-39 168.3 646 28.0
Lsat_1_v5_gn_2_11701 Lactuca sativa HOM05D004047 ORTHO05D004772 3.9e-39 167.5 800 28.1
unitig_8.g4918 Utricularia gibba HOM05D004047 ORTHO05D004772 8.8e-39 166.4 824 28.3
vmacro04336 Vaccinium macrocarpon HOM05D004047 ORTHO05D004772 8.8e-39 166.4 653 29.6
PSO170G4872 Papaver somniferum HOM05D004047 ORTHO05D004772 2.0e-38 165.2 987 26.0
PSO210G3933 Papaver somniferum HOM05D004047 ORTHO05D004772 1.7e-37 162.2 980 24.9
HPP92_001560 Vanilla planifolia HOM05D004047 ORTHO05D004772 6.3e-37 160.2 863 28.3
TPR.G34366 Trifolium pratense HOM05D004047 ORTHO05D004772 8.2e-37 159.8 748 27.9
Actinidia29790 Actinidia chinensis HOM05D004047 ORTHO05D004772 4.1e-36 157.5 597 32.0
Os04g0663100 Oryza sativa ssp. japonica HOM05D004047 ORTHO05D004772 9.1e-36 156.4 678 28.5
Glyma.04G026000 Glycine max HOM05D004047 ORTHO05D004772 6.5e-34 150.2 738 29.0
Zm00001eb067350 Zea mays HOM05D004047 ORTHO05D004772 3.2e-33 147.9 678 27.9
Sed0015788 Sechium edule HOM05D004047 ORTHO05D004772 7.2e-33 146.7 1028 24.3
Lj1g0015956 Lotus japonicus HOM05D004047 ORTHO05D004772 1.6e-32 145.6 825 27.5
SHI08087 Sapria himalayana HOM05D004047 ORTHO05D004772 1.2e-30 139.4 780 27.9
MELO3C003773.2 Cucumis melo HOM05D004047 ORTHO05D004772 1.8e-28 132.1 389 35.0
Oeu007049.1 Olea europaea HOM05D004047 ORTHO05D004772 1.2e-27 129.4 1127 23.7
Zm00001eb432990 Zea mays HOM05D004047 ORTHO05D004772 3.5e-27 127.9 910 26.2
Migut.N03142 Erythranthe guttata HOM05D004047 ORTHO05D004772 4.7e-24 117.5 788 27.0
unitig_578.g16088 Utricularia gibba HOM05D004047 ORTHO05D004772 3.0e-23 114.8 630 28.1
Actinidia37973 Actinidia chinensis HOM05D004047 ORTHO05D004772 4.4e-22 110.9 586 28.8
Lsat_1_v5_gn_8_51360 Lactuca sativa HOM05D004047 ORTHO05D004772 6.3e-21 107.1 274 33.9
Dinv39497 Davidia involucrata HOM05D004047 ORTHO05D004772 7.7e-19 100.1 195 41.0
THA.LOC104806899 Tarenaya hassleriana HOM05D004047 ORTHO05D004772 3.8e-18 97.8 800 25.9
ATR0147G010 Amborella trichopoda HOM05D004047 ORTHO05D004772 2.5e-17 95.1 574 27.9
HPP92_020925 Vanilla planifolia HOM05D004047 ORTHO05D004772 8.8e-15 86.7 209 32.1
vmacro04323 Vaccinium macrocarpon HOM05D004047 ORTHO05D004772 8.3e-13 80.1 242 28.9
ATR0952G001 Amborella trichopoda HOM05D004047 ORTHO05D004772 9.2e-12 76.6 230 35.7
unitig_578.g16089 Utricularia gibba HOM05D004047 ORTHO05D004772 3.8e-10 71.2 77 58.4
MSTRG.3224 Avicennia marina HOM05D002126 ORTHO05D002195 7.3e-09 67.0 557 22.4
Glyma.18G124200 Glycine max HOM05D002126 ORTHO05D002195 9.5e-09 66.6 198 30.3
Hma1.2p1_2815F.1_g328920 Hydrangea macrophylla HOM05D002126 ORTHO05D002195 2.1e-08 65.5 179 29.1
Lsat_1_v5_gn_2_88840 Lactuca sativa HOM05D002126 ORTHO05D002195 2.8e-08 65.1 269 26.4
Ah.10g032990 Amaranthus hybridus HOM05D000156 ORTHO05D001430 3.6e-08 64.7 189 28.0
Ciclev10031221m.g Citrus clementina HOM05D002126 ORTHO05D002195 3.6e-08 64.7 305 26.9
Oeu060926.1 Olea europaea HOM05D002126 ORTHO05D002195 8.0e-08 63.5 155 29.7
Dinv34213 Davidia involucrata HOM05D002126 ORTHO05D002195 1.8e-07 62.4 133 29.3
SGA_v2.0_scaffold205G41767 Striga asiatica HOM05D002126 ORTHO05D002195 2.3e-07 62.0 119 30.3
ECA246G3053 Erigeron canadensis HOM05D002126 ORTHO05D002195 4.0e-07 61.2 221 25.3
CSS0000973 Camellia sinensis var. sinensis HOM05D002126 ORTHO05D002195 1.5e-06 59.3 283 21.9
COL.COLO4_23031 Corchorus olitorius HOM05D002126 ORTHO05D002195 1.5e-06 59.3 158 28.5
HanXRQChr13g0405431 Helianthus annuus HOM05D000156 ORTHO05D001430 2.6e-06 58.5 181 28.2
Hma1.2p1_0449F.1_g155190 Hydrangea macrophylla HOM05D002126 ORTHO05D002195 3.4e-06 58.2 211 25.1
Psat1g160560 Pisum sativum HOM05D004047 ORTHO05D004772 3.4e-06 58.2 121 33.9
Cc07_g03150 Coffea canephora HOM05D002126 ORTHO05D002195 4.4e-06 57.8 150 26.0
CARHR084130 Cardamine hirsuta HOM05D000156 ORTHO05D001430 5.7e-06 57.4 193 26.4
PSO339G1797 Papaver somniferum HOM05D000156 ORTHO05D001430 5.7e-06 57.4 204 25.0
Glyma.12G189900 Glycine max HOM05D000156 ORTHO05D001290 7.5e-06 57.0 178 28.7
HanXRQChr09g0265481 Helianthus annuus HOM05D002126 ORTHO05D002195 7.5e-06 57.0 133 29.3
DCAR_011147 Daucus carota HOM05D002126 ORTHO05D002195 9.8e-06 56.6 184 28.3
Eucgr.J00581 Eucalyptus grandis HOM05D000156 ORTHO05D001290 9.8e-06 56.6 185 25.9


User provided reference genes

Program Settings