Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g17370 Schrenkiella parvula HOM05D005512 ORTHO05D006716 0.0e+00 1132.9 591 100.0
Thhalv10009681m.g Eutrema salsugineum HOM05D005512 ORTHO05D006716 2.8e-223 778.9 476 86.1
A06p15670 Brassica napus HOM05D005512 ORTHO05D006716 1.2e-210 736.9 482 84.6
BraA06t24676Z Brassica rapa HOM05D005512 ORTHO05D006716 6.8e-209 731.1 482 84.2
C05p17910 Brassica napus HOM05D005512 ORTHO05D006716 9.8e-208 727.2 482 84.0
Carub.0001s1906 Capsella rubella HOM05D005512 ORTHO05D006716 1.1e-206 723.8 480 82.1
AT1G19490 Arabidopsis thaliana HOM05D005512 ORTHO05D006716 4.1e-206 721.8 479 82.0
AL1G32240 Arabidopsis lyrata HOM05D005512 ORTHO05D006716 6.6e-204 714.5 478 81.8
CARHR020060 Cardamine hirsuta HOM05D005512 ORTHO05D006716 7.5e-200 701.0 478 80.1
BcaB03g14441 Brassica carinata HOM05D005512 ORTHO05D006716 2.9e-191 672.5 478 79.5
Aa31LG7G4150 Aethionema arabicum HOM05D005512 ORTHO05D006716 7.4e-155 551.6 493 66.1
THA.LOC104804992 Tarenaya hassleriana HOM05D005512 ORTHO05D006716 3.3e-123 446.4 532 54.7
Cpa.g.sc5.51 Carica papaya HOM05D005512 ORTHO05D006716 2.8e-85 320.5 509 45.8
Cfa016575 Carpinus fangiana HOM05D005512 ORTHO05D006716 1.2e-80 305.1 512 43.6
Ciclev10013541m.g Citrus clementina HOM05D005512 ORTHO05D006716 7.5e-75 285.8 514 42.4
Haze_19571 Corylus avellana HOM05D005512 ORTHO05D006716 4.9e-74 283.1 508 42.9
TWI74G0342 Tripterygium wilfordii HOM05D005512 ORTHO05D006716 1.9e-73 281.2 516 42.1
QL07p039701 Quercus lobata HOM05D005512 ORTHO05D006716 7.8e-72 275.8 531 39.7
TWI53G0330 Tripterygium wilfordii HOM05D005512 ORTHO05D006716 2.3e-71 274.2 507 41.4
Prupe.7G114400 Prunus persica HOM05D005512 ORTHO05D006716 1.1e-70 271.9 497 40.2
Sabra06G0089500 Salix brachista HOM05D005512 ORTHO05D006716 5.6e-70 269.6 488 41.4
RcHm_v2.0_Chr3g0472661 Rosa chinensis HOM05D005512 ORTHO05D006716 6.2e-69 266.2 490 40.2
MD12G1022300 Malus domestica HOM05D005512 ORTHO05D006716 8.1e-69 265.8 506 40.3
Potri.006G114600 Populus trichocarpa HOM05D005512 ORTHO05D006716 8.1e-69 265.8 491 42.2
CiPaw.09G010900 Carya illinoinensis HOM05D005512 ORTHO05D006716 2.3e-68 264.2 491 41.5
FAN09G0635 Fragaria x ananassa HOM05D005512 ORTHO05D006716 3.4e-67 260.4 528 38.6
FAN02G2015 Fragaria x ananassa HOM05D005512 ORTHO05D006716 4.4e-67 260.0 493 40.0
FAN05G0202 Fragaria x ananassa HOM05D005512 ORTHO05D006716 4.4e-67 260.0 517 39.5
FAN14G2179 Fragaria x ananassa HOM05D005512 ORTHO05D006716 2.4e-65 254.2 491 40.1
FvH4_6g18250 Fragaria vesca HOM05D005512 ORTHO05D006716 2.1e-64 251.1 533 38.1
FAN05G5667 Fragaria x ananassa HOM05D005512 ORTHO05D006716 1.0e-63 248.8 548 37.4
Manes.09G059527 Manihot esculenta HOM05D005512 ORTHO05D006716 1.3e-63 248.4 480 39.6
CiPaw.10G007200 Carya illinoinensis HOM05D005512 ORTHO05D006716 2.8e-61 240.7 540 37.4
MD14G1019200 Malus domestica HOM05D005512 ORTHO05D006716 4.7e-61 240.0 472 38.1
Dinv21230 Davidia involucrata HOM05D005512 ORTHO05D006716 8.1e-61 239.2 513 37.2
FAN14G2174 Fragaria x ananassa HOM05D005512 ORTHO05D006716 3.8e-58 230.3 488 39.1
Dinv31662 Davidia involucrata HOM05D005512 ORTHO05D006716 6.4e-58 229.6 516 37.0
Thecc.05G085400 Theobroma cacao HOM05D005512 ORTHO05D006716 9.3e-57 225.7 413 40.2
Atru.chr8.1592 Acer truncatum HOM05D005512 ORTHO05D006716 2.5e-54 217.6 340 44.4
CANSAT80G2511 Cannabis sativa HOM05D005512 ORTHO05D006716 2.5e-54 217.6 495 38.0
Duzib128G1345 Durio zibethinus HOM05D005512 ORTHO05D006716 4.8e-53 213.4 410 40.0
GSVIVG01033811001 Vitis vinifera HOM05D005512 ORTHO05D006716 4.2e-49 200.3 527 35.9
BcaC05g25849 Brassica carinata HOM05D005512 ORTHO05D006716 2.1e-48 198.0 152 79.6
Gohir.A04G064600 Gossypium hirsutum HOM05D005512 ORTHO05D006716 3.5e-48 197.2 404 37.4
COL.COLO4_29783 Corchorus olitorius HOM05D005512 ORTHO05D006716 4.6e-48 196.8 601 33.8
Gohir.D04G102100 Gossypium hirsutum HOM05D005512 ORTHO05D006716 1.3e-47 195.3 578 32.4
Gorai.009G405400 Gossypium raimondii HOM05D005512 ORTHO05D006716 2.3e-47 194.5 583 31.9
ClCG10G019160 Citrullus lanatus HOM05D005512 ORTHO05D006716 3.0e-47 194.1 498 35.5
MELO3C009455.2 Cucumis melo HOM05D005512 ORTHO05D006716 1.1e-46 192.2 503 35.8
Sed0026834 Sechium edule HOM05D005512 ORTHO05D006716 2.5e-46 191.0 505 37.6
CsaV3_3G037090 Cucumis sativus L. HOM05D005512 ORTHO05D006716 2.4e-44 184.5 497 37.0
TAR623G0330 Trochodendron aralioides HOM05D005512 ORTHO05D006716 3.4e-43 180.6 316 43.0
Lalb_Chr20g0112081 Lupinus albus HOM05D005512 ORTHO05D006716 4.5e-43 180.3 452 34.1
Nn6g34983 Nelumbo nucifera HOM05D005512 ORTHO05D006716 4.9e-42 176.8 475 33.7
Glyma.19G193400 Glycine max HOM05D005512 ORTHO05D006716 6.4e-42 176.4 522 32.8
VMungo1383G0830 Vigna mungo HOM05D005512 ORTHO05D006716 2.4e-41 174.5 351 38.5
Hma1.2p1_0084F.1_g043460 Hydrangea macrophylla HOM05D005512 ORTHO05D006716 5.5e-41 173.3 490 35.3
Duzib093G0027 Durio zibethinus HOM05D005512 ORTHO05D006716 7.1e-41 172.9 559 34.0
Lj1g0021236 Lotus japonicus HOM05D005512 ORTHO05D006716 6.7e-39 166.4 480 32.1
arahy.Tifrunner.gnm1.ann1.EPRD9B Arachis hypogaea HOM05D005512 ORTHO05D006716 1.5e-38 165.2 507 31.8
Aqoxy4G02826 Aquilegia oxysepala HOM05D005512 ORTHO05D006716 5.6e-38 163.3 478 35.1
Phvul.001G188300 Phaseolus vulgaris HOM05D005512 ORTHO05D006716 1.6e-37 161.8 349 34.7
PGR142G2241 Punica granatum HOM05D005512 ORTHO05D006716 5.3e-36 156.8 509 32.4
Lj3A1000G63 Lonicera japonica HOM05D005512 ORTHO05D006716 7.6e-35 152.9 460 33.3
PSO384G3501 Papaver somniferum HOM05D005512 ORTHO05D006716 5.5e-33 146.7 495 30.3
arahy.Tifrunner.gnm1.ann1.S7MLB0 Arachis hypogaea HOM05D005512 ORTHO05D006716 7.1e-33 146.4 496 31.5
PSO339G0823 Papaver somniferum HOM05D005512 ORTHO05D006716 2.3e-31 141.4 347 33.1
Actinidia10388 Actinidia chinensis HOM05D005512 ORTHO05D006716 1.3e-29 135.6 390 32.8
ECA238G0726 Erigeron canadensis HOM05D000284 ORTHO05D001229 2.4e-28 131.3 467 31.5
BcaC05g25848 Brassica carinata HOM05D009266 ORTHO05D011425 4.1e-28 130.6 81 88.9
CAN.G397.46 Capsicum annuum HOM05D005512 ORTHO05D006716 4.1e-28 130.6 354 33.1
A08p29780 Brassica napus HOM05D009266 ORTHO05D011425 5.3e-28 130.2 75 90.7
BraA08t34912Z Brassica rapa HOM05D009266 ORTHO05D011425 5.3e-28 130.2 75 90.7
Thhalv10009239m.g Eutrema salsugineum HOM05D009266 ORTHO05D011425 9.0e-28 129.4 80 87.5
C08p19500 Brassica napus HOM05D009266 ORTHO05D011425 1.2e-27 129.0 75 90.7
BolC8t49573H Brassica oleracea HOM05D009266 ORTHO05D011425 1.2e-27 129.0 75 90.7
Peaxi162Scf00752g00310 Petunia axillaris HOM05D005512 ORTHO05D006716 2.0e-27 128.3 347 34.0
Peaxi162Scf36127g00005 Petunia axillaris HOM05D005512 ORTHO05D006716 2.0e-27 128.3 347 34.0
Rhsim03G0078100 Rhododendron simsii HOM05D005512 ORTHO05D006716 5.9e-27 126.7 556 28.4
Nn2g14077 Nelumbo nucifera HOM05D005512 ORTHO05D006716 1.3e-26 125.6 240 39.6
Actinidia08422 Actinidia chinensis HOM05D005512 ORTHO05D006716 2.2e-26 124.8 248 35.9
MSTRG.10360 Avicennia marina HOM05D005512 ORTHO05D006716 8.5e-26 122.9 390 29.7
A06p15680 Brassica napus HOM05D009266 ORTHO05D011425 7.2e-25 119.8 76 88.2
C05p17920 Brassica napus HOM05D009266 ORTHO05D011425 7.2e-25 119.8 76 88.2
BolC5t30498H Brassica oleracea HOM05D009266 ORTHO05D011425 7.2e-25 119.8 76 88.2
BraA06t24677Z Brassica rapa HOM05D009266 ORTHO05D011425 7.2e-25 119.8 76 88.2
AL1G32250 Arabidopsis lyrata HOM05D009266 ORTHO05D011425 2.1e-24 118.2 80 81.2
AT1G19500 Arabidopsis thaliana HOM05D009266 ORTHO05D011425 3.6e-24 117.5 80 81.2
Sc20g0006160 Simmondsia chinensis HOM05D005512 ORTHO05D006716 1.0e-23 115.9 460 31.5
Carub.0001s1907 Capsella rubella HOM05D009266 ORTHO05D011425 1.3e-23 115.5 75 82.7
HanXRQChr16g0518951 Helianthus annuus HOM05D005512 ORTHO05D006716 3.9e-23 114.0 467 33.0
Lsat_1_v5_gn_2_22561 Lactuca sativa HOM05D005512 ORTHO05D006716 3.9e-23 114.0 246 38.2
Oeu056908.1 Olea europaea HOM05D005512 ORTHO05D006716 3.9e-23 114.0 391 32.5
Sopen09g004520 Solanum pennellii HOM05D005512 ORTHO05D006716 3.9e-23 114.0 381 29.4
AUR62028570 Chenopodium quinoa HOM05D005512 ORTHO05D006716 5.1e-23 113.6 383 31.9
Nitab4.5_0005756g0030 Nicotiana tabacum HOM05D005512 ORTHO05D006716 6.7e-23 113.2 383 31.1
C07p23930 Brassica napus HOM05D005512 ORTHO05D006716 1.9e-22 111.7 67 82.1
BolC7t42915H Brassica oleracea HOM05D005512 ORTHO05D006716 1.9e-22 111.7 67 82.1
Eucgr.K02060 Eucalyptus grandis HOM05D005512 ORTHO05D006716 1.9e-22 111.7 320 30.3
Solyc09g009760.1 Solanum lycopersicum HOM05D005512 ORTHO05D006716 5.7e-22 110.2 381 28.9
AUR62033525 Chenopodium quinoa HOM05D005512 ORTHO05D006716 7.4e-22 109.8 386 31.6
Psat3g034880 Pisum sativum HOM05D005512 ORTHO05D006716 9.7e-22 109.4 507 29.0
Nitab4.5_0000794g0130 Nicotiana tabacum HOM05D005512 ORTHO05D006716 1.3e-21 109.0 443 28.9
BolC7t42914H Brassica oleracea HOM05D005512 ORTHO05D006716 2.8e-21 107.8 237 38.8
CARHR020070 Cardamine hirsuta HOM05D009266 ORTHO05D011425 3.7e-21 107.5 80 73.8
CDE08G0293 Ceratophyllum demersum HOM05D005512 ORTHO05D006716 3.7e-21 107.5 220 40.9
Hund14853 Selenicereus undatus HOM05D005512 ORTHO05D006716 3.7e-21 107.5 379 31.1
CSS0012282 Camellia sinensis var. sinensis HOM05D005512 ORTHO05D006716 4.8e-21 107.1 405 30.9
TPR.G19527 Trifolium pratense HOM05D005512 ORTHO05D006716 4.8e-21 107.1 482 26.6
EL10Ac7g16952 Beta vulgaris HOM05D005512 ORTHO05D006716 6.3e-21 106.7 340 32.6
Glyma.03G193300 Glycine max HOM05D005512 ORTHO05D006716 6.9e-20 103.2 458 29.7
MBI17_g31309_MAGBIO Magnolia biondii HOM05D005512 ORTHO05D006716 1.5e-19 102.1 487 29.6
ATR0820G165 Amborella trichopoda HOM05D005512 ORTHO05D006716 2.0e-19 101.7 336 32.1
Medtr7g104190 Medicago truncatula HOM05D005512 ORTHO05D006716 2.0e-19 101.7 495 26.7
Nitab4.5_0011780g0020 Nicotiana tabacum HOM05D005512 ORTHO05D006716 2.0e-19 101.7 370 32.2
Cc08_g02550 Coffea canephora HOM05D005512 ORTHO05D006716 5.9e-19 100.1 414 28.7
CDE06G1506 Ceratophyllum demersum HOM05D000077 ORTHO05D002348 1.3e-18 99.0 87 63.2
Lj2A133G43 Lonicera japonica HOM05D005512 ORTHO05D006716 9.4e-17 92.8 465 27.5
HPP92_009043 Vanilla planifolia HOM05D005512 ORTHO05D006716 1.6e-16 92.0 294 31.6
Lsat_1_v5_gn_6_66321 Lactuca sativa HOM05D005512 ORTHO05D006716 2.1e-16 91.7 200 35.5
Glyma.17G197300 Glycine max HOM05D005512 ORTHO05D006716 2.7e-16 91.3 141 39.0
BolC3t14698H Brassica oleracea HOM05D009266 ORTHO05D011425 2.3e-15 88.2 70 70.0
BraA03t11225Z Brassica rapa HOM05D009266 ORTHO05D011425 2.3e-15 88.2 70 70.0
C07p23920 Brassica napus HOM05D005512 ORTHO05D006716 3.0e-15 87.8 90 60.0
BcaC01g05708 Brassica carinata HOM05D009266 ORTHO05D011425 6.7e-15 86.7 70 68.6
Sp4g18020 Schrenkiella parvula HOM05D009266 ORTHO05D011425 2.0e-14 85.1 74 67.6
Glyma.19G084800 Glycine max HOM05D005512 ORTHO05D006716 2.6e-14 84.7 141 37.6
Zm00001eb197160 Zea mays HOM05D005512 ORTHO05D006716 2.6e-14 84.7 82 56.1
DCAR_009151 Daucus carota HOM05D005512 ORTHO05D006716 4.4e-14 84.0 528 25.9
A03p19710 Brassica napus HOM05D009266 ORTHO05D011425 9.7e-14 82.8 72 63.9
C03p22970 Brassica napus HOM05D009266 ORTHO05D011425 9.7e-14 82.8 72 63.9
Os11g0154900 Oryza sativa ssp. japonica HOM05D005512 ORTHO05D006716 2.2e-13 81.6 184 38.0
A04p27230 Brassica napus HOM05D009266 ORTHO05D011425 4.8e-13 80.5 70 70.0
Solyc10g083380.2 Solanum lycopersicum HOM05D005512 ORTHO05D006716 4.8e-13 80.5 177 37.3
Aa31LG7G4160 Aethionema arabicum HOM05D009266 ORTHO05D011425 6.3e-13 80.1 79 63.3
Sopen10g032880 Solanum pennellii HOM05D005512 ORTHO05D006716 1.1e-12 79.3 177 37.3
DCAR_020766 Daucus carota HOM05D005512 ORTHO05D006716 1.4e-12 79.0 205 38.0
Thhalv10017498m.g Eutrema salsugineum HOM05D009266 ORTHO05D011425 1.4e-12 79.0 74 62.2
PGSC0003DMG400028166 Solanum tuberosum HOM05D005512 ORTHO05D006716 2.4e-12 78.2 237 30.8
AL4G31870 Arabidopsis lyrata HOM05D009266 ORTHO05D011425 1.5e-11 75.5 74 56.8
Pp3c14_6250 Physcomitrium patens HOM05D005512 ORTHO05D006716 2.0e-11 75.1 152 42.1
CARHR130010 Cardamine hirsuta HOM05D009266 ORTHO05D011425 3.4e-11 74.3 74 55.4
PGSC0003DMG402008883 Solanum tuberosum HOM05D005512 ORTHO05D006716 5.9e-11 73.6 321 27.7
Eucgr.K02061 Eucalyptus grandis HOM05D005512 ORTHO05D006716 7.7e-11 73.2 178 40.4
C07p23910 Brassica napus HOM05D005512 ORTHO05D006716 1.0e-10 72.8 69 69.6
Zm00001eb406920 Zea mays HOM05D005512 ORTHO05D006716 1.0e-10 72.8 71 54.9
AT2G35765 Arabidopsis thaliana HOM05D009266 ORTHO05D011425 3.8e-10 70.9 74 54.1
Pp3c17_11650 Physcomitrium patens HOM05D005512 ORTHO05D006716 3.8e-10 70.9 166 39.2
SalBow3G2059 Salvia bowleyana HOM05D005512 ORTHO05D006716 3.8e-10 70.9 330 28.2
AagrBONN_evm.TU.Sc2ySwM_117.2312 Anthoceros agrestis HOM05D005512 ORTHO05D006716 1.9e-09 68.6 251 34.3
Oeu040522.1 Olea europaea HOM05D005512 ORTHO05D006716 3.2e-09 67.8 332 29.2
unitig_22.g5122 Utricularia gibba HOM05D005512 ORTHO05D006716 1.6e-08 65.5 76 53.9
BcaC02g07671 Brassica carinata HOM05D009266 ORTHO05D011425 1.4e-07 62.4 74 58.1
THA.LOC109116671 Tarenaya hassleriana HOM05D009266 ORTHO05D011425 1.4e-07 62.4 71 53.5
Ah.08g210690 Amaranthus hybridus HOM05D005512 ORTHO05D006716 1.8e-07 62.0 372 26.1
QL07p039646 Quercus lobata HOM05D005512 ORTHO05D006716 2.3e-07 61.6 300 25.3
ATR0820G116 Amborella trichopoda HOM05D005512 ORTHO05D006716 1.1e-06 59.3 218 33.5
BcaB01g03883 Brassica carinata HOM05D009266 ORTHO05D011425 3.3e-06 57.8 55 61.8


User provided reference genes

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