Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g17250 Schrenkiella parvula HOM05D007089 ORTHO05D008959 1.3e-243 845.9 415 100.0
AL1G31930 Arabidopsis lyrata HOM05D007089 ORTHO05D008959 3.6e-209 731.5 415 85.1
Carub.0001s1893 Capsella rubella HOM05D007089 ORTHO05D008959 9.3e-205 716.8 415 83.6
Thhalv10007768m.g Eutrema salsugineum HOM05D007089 ORTHO05D008959 3.9e-203 711.4 415 84.1
BolC5t30479H Brassica oleracea HOM05D007089 ORTHO05D008959 5.6e-202 707.6 418 84.0
AT1G19340 Arabidopsis thaliana HOM05D007089 ORTHO05D008959 1.4e-200 703.0 416 82.5
BraA06t24662Z Brassica rapa HOM05D007089 ORTHO05D008959 3.8e-198 694.9 418 81.8
A06p15500 Brassica napus HOM05D007089 ORTHO05D008959 1.1e-197 693.3 418 81.3
C05p17740 Brassica napus HOM05D007089 ORTHO05D008959 1.1e-197 693.3 419 82.3
BcaB07g31960 Brassica carinata HOM05D007089 ORTHO05D008959 5.0e-190 667.9 420 80.2
Aa31LG7G4040 Aethionema arabicum HOM05D007089 ORTHO05D008959 8.7e-187 657.1 415 77.6
CARHR019930 Cardamine hirsuta HOM05D007089 ORTHO05D008959 1.7e-177 626.3 365 83.8
THA.LOC104809053 Tarenaya hassleriana HOM05D007089 ORTHO05D008959 7.2e-165 584.3 416 69.0
Gorai.010G011900 Gossypium raimondii HOM05D007089 ORTHO05D008959 5.0e-142 508.4 411 63.0
Gohir.D06G009100 Gossypium hirsutum HOM05D007089 ORTHO05D008959 7.3e-141 504.6 411 62.5
Gohir.A06G011700 Gossypium hirsutum HOM05D007089 ORTHO05D008959 9.5e-141 504.2 411 62.8
Ciclev10001360m.g Citrus clementina HOM05D007089 ORTHO05D008959 2.3e-139 499.6 409 61.6
Hma1.2p1_0203F.1_g086680 Hydrangea macrophylla HOM05D007089 ORTHO05D008959 3.0e-139 499.2 418 59.6
COL.COLO4_26368 Corchorus olitorius HOM05D007089 ORTHO05D008959 1.1e-136 490.7 411 60.3
Lj4A43T59 Lonicera japonica HOM05D007089 ORTHO05D008959 1.3e-134 483.8 419 57.5
Cfa018438 Carpinus fangiana HOM05D007089 ORTHO05D008959 1.1e-133 480.7 419 57.5
Oeu015592.2 Olea europaea HOM05D007089 ORTHO05D008959 2.1e-132 476.5 446 54.7
CSS0000683 Camellia sinensis var. sinensis HOM05D007089 ORTHO05D008959 2.8e-132 476.1 419 56.1
Atru.chr13.537 Acer truncatum HOM05D007089 ORTHO05D008959 5.2e-131 471.9 413 56.2
GSVIVG01009652001 Vitis vinifera HOM05D007089 ORTHO05D008959 1.5e-130 470.3 418 57.2
MSTRG.22295 Avicennia marina HOM05D007089 ORTHO05D008959 2.6e-130 469.5 415 57.1
Manes.05G163100 Manihot esculenta HOM05D007089 ORTHO05D008959 5.8e-130 468.4 422 56.9
Prupe.1G383100 Prunus persica HOM05D007089 ORTHO05D008959 5.8e-130 468.4 415 58.6
Migut.N00515 Erythranthe guttata HOM05D007089 ORTHO05D008959 4.9e-129 465.3 418 55.5
Nn1g05102 Nelumbo nucifera HOM05D007089 ORTHO05D008959 1.9e-128 463.4 413 56.7
Potri.014G041400 Populus trichocarpa HOM05D007089 ORTHO05D008959 9.2e-128 461.1 411 57.2
Glyma.14G077000 Glycine max HOM05D007089 ORTHO05D008959 6.0e-127 458.4 423 56.3
Sopen04g033530 Solanum pennellii HOM05D007089 ORTHO05D008959 6.0e-127 458.4 410 54.9
Nitab4.5_0005314g0050 Nicotiana tabacum HOM05D007089 ORTHO05D008959 1.0e-126 457.6 418 54.1
Eucgr.F01540 Eucalyptus grandis HOM05D007089 ORTHO05D008959 1.3e-126 457.2 412 54.4
CANSAT25G1057 Cannabis sativa HOM05D007089 ORTHO05D008959 1.7e-126 456.8 414 55.1
PGSC0003DMG400027847 Solanum tuberosum HOM05D007089 ORTHO05D008959 1.7e-126 456.8 410 54.4
CiPaw.09G208600 Carya illinoinensis HOM05D007089 ORTHO05D008959 3.9e-126 455.7 418 56.0
ClCG08G015310 Citrullus lanatus HOM05D007089 ORTHO05D008959 1.1e-125 454.1 418 54.3
Sc02g0006440 Simmondsia chinensis HOM05D007089 ORTHO05D008959 1.5e-125 453.8 429 55.0
PGR083G0581 Punica granatum HOM05D007089 ORTHO05D008959 2.8e-124 449.5 417 54.4
Medtr1g021985 Medicago truncatula HOM05D007089 ORTHO05D008959 6.2e-124 448.4 420 55.5
Ca_13340_v3 Cicer arietinum L. HOM05D007089 ORTHO05D008959 1.8e-123 446.8 438 53.0
Lalb_Chr14g0369091 Lupinus albus HOM05D007089 ORTHO05D008959 1.2e-122 444.1 421 53.9
PSO700G0257 Papaver somniferum HOM05D007089 ORTHO05D008959 4.4e-122 442.2 422 53.8
SalBow8G1187 Salvia bowleyana HOM05D007089 ORTHO05D008959 1.7e-121 440.3 437 52.6
SalBow8G1554 Salvia bowleyana HOM05D007089 ORTHO05D008959 1.7e-121 440.3 437 52.6
CAN.G1126.18 Capsicum annuum HOM05D007089 ORTHO05D008959 2.9e-121 439.5 422 52.1
TPR.G15730 Trifolium pratense HOM05D007089 ORTHO05D008959 3.7e-121 439.1 425 54.1
arahy.Tifrunner.gnm1.ann1.4B2PQ4 Arachis hypogaea HOM05D007089 ORTHO05D008959 6.4e-121 438.3 428 53.0
VMungo0647G2017 Vigna mungo HOM05D007089 ORTHO05D008959 6.4e-121 438.3 424 53.8
Aqoxy5G01701 Aquilegia oxysepala HOM05D007089 ORTHO05D008959 8.3e-121 438.0 414 53.1
RcHm_v2.0_Chr6g0300531 Rosa chinensis HOM05D007089 ORTHO05D008959 1.1e-120 437.6 415 54.2
Peaxi162Scf00057g00723 Petunia axillaris HOM05D007089 ORTHO05D008959 1.4e-120 437.2 416 54.1
TAR381G0661 Trochodendron aralioides HOM05D007089 ORTHO05D008959 2.4e-120 436.4 418 53.3
Psat6g006920 Pisum sativum HOM05D007089 ORTHO05D008959 4.1e-120 435.6 421 54.2
PSO170G0803 Papaver somniferum HOM05D007089 ORTHO05D008959 5.4e-120 435.3 417 53.7
MD04G1062700 Malus domestica HOM05D007089 ORTHO05D008959 7.1e-120 434.9 416 56.2
SGA_v2.0_scaffold33G13513 Striga asiatica HOM05D007089 ORTHO05D008959 7.1e-120 434.9 429 52.0
Haze_17627 Corylus avellana HOM05D007089 ORTHO05D008959 9.2e-120 434.5 421 53.9
Duzib041G0709 Durio zibethinus HOM05D007089 ORTHO05D008959 1.6e-119 433.7 415 55.9
HanXRQChr14g0437051 Helianthus annuus HOM05D007089 ORTHO05D008959 2.1e-119 433.3 410 54.4
Cc10_g03320 Coffea canephora HOM05D007089 ORTHO05D008959 4.6e-119 432.2 420 53.3
FvH4_2g40230 Fragaria vesca HOM05D007089 ORTHO05D008959 7.8e-119 431.4 415 53.7
AUR62025603 Chenopodium quinoa HOM05D007089 ORTHO05D008959 3.9e-118 429.1 461 50.5
PSO832G2704 Papaver somniferum HOM05D007089 ORTHO05D008959 3.9e-118 429.1 422 52.8
Ah.08g217460 Amaranthus hybridus HOM05D007089 ORTHO05D008959 5.1e-118 428.7 433 51.3
QL02p007525 Quercus lobata HOM05D007089 ORTHO05D008959 6.6e-118 428.3 544 45.4
Solyc04g079950.4 Solanum lycopersicum HOM05D007089 ORTHO05D008959 3.3e-117 426.0 397 53.4
Rhsim07G0236000 Rhododendron simsii HOM05D007089 ORTHO05D008959 5.6e-117 425.2 467 50.1
Cpa.g.sc64.54 Carica papaya HOM05D007089 ORTHO05D008959 2.1e-116 423.3 323 64.4
ATR0733G253 Amborella trichopoda HOM05D007089 ORTHO05D008959 1.4e-115 420.6 424 50.5
FAN15G3100 Fragaria x ananassa HOM05D007089 ORTHO05D008959 1.4e-115 420.6 423 52.7
HPP92_020401 Vanilla planifolia HOM05D007089 ORTHO05D008959 8.4e-113 411.4 413 53.0
vmacro04507 Vaccinium macrocarpon HOM05D007089 ORTHO05D008959 1.6e-111 407.1 431 50.6
arahy.Tifrunner.gnm1.ann1.K9WZZ6 Arachis hypogaea HOM05D007089 ORTHO05D008959 4.3e-109 399.1 428 49.8
Sabra14G0030300 Salix brachista HOM05D007089 ORTHO05D008959 1.2e-106 391.0 365 56.2
DCAR_008774 Daucus carota HOM05D007089 ORTHO05D008959 1.5e-106 390.6 374 54.5
AUR62001387 Chenopodium quinoa HOM05D007089 ORTHO05D008959 1.7e-105 387.1 441 49.2
Os03g0198900 Oryza sativa ssp. japonica HOM05D007089 ORTHO05D008959 3.8e-105 386.0 419 45.8
Phvul.001G016200 Phaseolus vulgaris HOM05D007089 ORTHO05D008959 2.7e-103 379.8 376 54.0
unitig_8.g3115 Utricularia gibba HOM05D007089 ORTHO05D008959 2.7e-103 379.8 398 49.0
Nitab4.5_0000110g0230 Nicotiana tabacum HOM05D007089 ORTHO05D008959 3.0e-102 376.3 374 51.1
CsaV3_2G028500 Cucumis sativus L. HOM05D007089 ORTHO05D008959 1.1e-99 367.9 353 51.8
EL10Ac7g18245 Beta vulgaris HOM05D007089 ORTHO05D008959 2.4e-99 366.7 440 46.1
Zm00001eb007930 Zea mays HOM05D007089 ORTHO05D008959 1.5e-98 364.0 419 44.9
MBI16_g26378_MAGBIO Magnolia biondii HOM05D007089 ORTHO05D008959 6.4e-97 358.6 436 47.2
ECA246G5250 Erigeron canadensis HOM05D007089 ORTHO05D008959 2.4e-96 356.7 348 52.0
Mapoly0005s0290 Marchantia polymorpha HOM05D007089 ORTHO05D008959 3.4e-90 336.3 433 44.3
Lj5g0009638 Lotus japonicus HOM05D007089 ORTHO05D008959 8.4e-89 331.6 354 52.3
Lsat_1_v5_gn_5_30021 Lactuca sativa HOM05D007089 ORTHO05D008959 1.2e-87 327.8 374 48.1
SEGI_17198 Sequoiadendron giganteum HOM05D007089 ORTHO05D008959 2.5e-85 320.1 427 43.6
Pp3c10_21330 Physcomitrium patens HOM05D007089 ORTHO05D008959 2.9e-81 306.6 292 50.0
CDE02G1565 Ceratophyllum demersum HOM05D007089 ORTHO05D008959 1.0e-78 298.1 391 42.7
BcaNung07258 Brassica carinata HOM05D000817 ORTHO05D008959 3.0e-78 296.6 164 84.1
SEGI_08195 Sequoiadendron giganteum HOM05D007089 ORTHO05D008959 7.6e-74 282.0 347 45.5
FAN20G0063 Fragaria x ananassa HOM05D007089 ORTHO05D008959 1.9e-69 267.3 345 45.5
Actinidia29839 Actinidia chinensis HOM05D007089 ORTHO05D008959 6.3e-68 262.3 350 43.7
Actinidia38023 Actinidia chinensis HOM05D007089 ORTHO05D008959 9.7e-61 238.4 321 41.4
SMO358G0064 Selaginella moellendorffii HOM05D007089 ORTHO05D008959 1.9e-56 224.2 194 54.1
CBR_g34449 Chara braunii HOM05D007089 ORTHO05D008959 1.1e-48 198.4 388 32.7
Thecc.01G286100 Theobroma cacao HOM05D007089 ORTHO05D008959 1.9e-48 197.6 219 50.2
AagrBONN_evm.TU.Sc2ySwM_228.1009 Anthoceros agrestis HOM05D007089 ORTHO05D008959 4.4e-45 186.4 232 42.7
MELO3C010924.2 Cucumis melo HOM05D007089 ORTHO05D008959 1.7e-44 184.5 229 45.4
Glyma.17G248801 Glycine max HOM05D007089 ORTHO05D008959 1.9e-24 117.9 99 57.6
FAN27G0845 Fragaria x ananassa HOM05D007089 ORTHO05D008959 6.8e-22 109.4 151 45.7
Thecc.08G022600 Theobroma cacao HOM05D007089 ORTHO05D008959 1.0e-17 95.5 160 43.8
CSS0043770 Camellia sinensis var. sinensis HOM05D007089 ORTHO05D008959 2.5e-16 90.9 162 37.0
Sed0025576 Sechium edule HOM05D007089 ORTHO05D008959 3.6e-15 87.0 64 54.7
Cfa025491 Carpinus fangiana HOM05D007089 ORTHO05D008959 9.8e-13 79.0 195 28.7
BolC8t49566H Brassica oleracea HOM05D040593 ORTHO05D033422 4.3e-08 63.5 34 82.4
BcaB03g14451 Brassica carinata HOM05D000817 ORTHO05D000702 2.8e-07 60.8 27 92.6
BcaC07g41261 Brassica carinata HOM05D000817 ORTHO05D000702 6.2e-07 59.7 29 82.8
C08p42630 Brassica napus HOM05D000817 ORTHO05D000702 6.2e-07 59.7 29 82.8
BolC8t51824H Brassica oleracea HOM05D000817 ORTHO05D000702 6.2e-07 59.7 29 82.8
BraA08t34919Z Brassica rapa HOM05D040593 ORTHO05D033422 8.9e-06 55.8 30 80.0
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 8.9e-06 55.8 99 37.4


User provided reference genes

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