Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g17150 Schrenkiella parvula HOM05D007531 ORTHO05D009484 6.0e-49 197.2 101 100.0
AL1G31820 Arabidopsis lyrata HOM05D007531 ORTHO05D009484 5.1e-40 167.5 104 86.5
Aa31LG7G3950 Aethionema arabicum HOM05D007531 ORTHO05D009484 1.5e-39 166.0 102 83.3
BcaB07g31940 Brassica carinata HOM05D007531 ORTHO05D009484 1.5e-39 166.0 102 83.3
BcaC07g38992 Brassica carinata HOM05D007531 ORTHO05D009484 1.5e-39 166.0 102 83.3
Carub.0001s1884 Capsella rubella HOM05D007531 ORTHO05D009484 3.7e-38 161.4 104 82.7
Thhalv10009175m.g Eutrema salsugineum HOM05D007531 ORTHO05D009484 4.8e-38 161.0 102 79.4
AT1G19240 Arabidopsis thaliana HOM05D007531 ORTHO05D009484 3.5e-33 144.8 105 74.3
THA.LOC104809045 Tarenaya hassleriana HOM05D007531 ORTHO05D009484 6.1e-33 144.1 101 70.3
BolC5t30467H Brassica oleracea HOM05D007531 ORTHO05D009484 3.9e-32 141.4 104 72.1
CARHR019840 Cardamine hirsuta HOM05D007531 ORTHO05D009484 6.9e-29 130.6 111 64.0
A06p15390 Brassica napus HOM05D007531 ORTHO05D009484 1.4e-26 122.9 108 63.0
BraA06t24652Z Brassica rapa HOM05D007531 ORTHO05D009484 1.4e-26 122.9 108 63.0
C05p17640 Brassica napus HOM05D007531 ORTHO05D009484 2.1e-25 119.0 101 65.3
Cpa.g.sc82.75 Carica papaya HOM05D007531 ORTHO05D009484 1.5e-23 112.8 103 62.1
Prupe.7G193100 Prunus persica HOM05D007531 ORTHO05D009484 2.4e-21 105.5 102 56.9
Manes.03G043400 Manihot esculenta HOM05D007531 ORTHO05D009484 1.2e-20 103.2 102 59.8
Sc14g0000480 Simmondsia chinensis HOM05D007531 ORTHO05D009484 1.0e-19 100.1 102 55.9
GSVIVG01015026001 Vitis vinifera HOM05D007531 ORTHO05D009484 1.0e-19 100.1 102 54.9
Dinv42427 Davidia involucrata HOM05D007531 ORTHO05D009484 1.7e-19 99.4 105 55.2
PGR042G0735 Punica granatum HOM05D007531 ORTHO05D009484 2.2e-19 99.0 102 56.9
Potri.006G137401 Populus trichocarpa HOM05D007531 ORTHO05D009484 2.9e-19 98.6 103 57.3
TWI63G1700 Tripterygium wilfordii HOM05D007531 ORTHO05D009484 5.0e-19 97.8 102 52.9
MD15G1222700 Malus domestica HOM05D007531 ORTHO05D009484 1.1e-18 96.7 102 52.0
Duzib150G1567 Durio zibethinus HOM05D007531 ORTHO05D009484 7.2e-18 94.0 107 52.3
Manes.16G092000 Manihot esculenta HOM05D007531 ORTHO05D009484 9.4e-18 93.6 103 54.4
Thecc.09G071300 Theobroma cacao HOM05D007531 ORTHO05D009484 9.4e-18 93.6 104 52.9
CANSAT56G3767 Cannabis sativa HOM05D007531 ORTHO05D009484 1.2e-17 93.2 102 52.0
CSS0023587 Camellia sinensis var. sinensis HOM05D007531 ORTHO05D009484 1.6e-17 92.8 102 53.9
EL10Ac8g18992 Beta vulgaris HOM05D007531 ORTHO05D009484 2.7e-17 92.0 102 53.9
Nitab4.5_0001092g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 3.6e-17 91.7 102 49.0
COL.COLO4_21218 Corchorus olitorius HOM05D007531 ORTHO05D009484 6.1e-17 90.9 109 49.5
SGA_v2.0_scaffold296G47570 Striga asiatica HOM05D007531 ORTHO05D009484 6.1e-17 90.9 106 49.1
Duzib168G1872 Durio zibethinus HOM05D007531 ORTHO05D009484 1.0e-16 90.1 103 50.5
Gorai.004G285500 Gossypium raimondii HOM05D007531 ORTHO05D009484 1.0e-16 90.1 102 51.0
Ciclev10010006m.g Citrus clementina HOM05D007531 ORTHO05D009484 1.4e-16 89.7 105 48.6
FAN23G0531 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.4e-16 89.7 105 47.6
FAN26G1659 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.4e-16 89.7 104 46.2
FAN26G1806 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.4e-16 89.7 104 46.2
Rhsim05G0002900 Rhododendron simsii HOM05D007531 ORTHO05D009484 1.4e-16 89.7 102 51.0
Cfa002948 Carpinus fangiana HOM05D007531 ORTHO05D009484 1.8e-16 89.4 106 50.9
Eucgr.H05011 Eucalyptus grandis HOM05D007531 ORTHO05D009484 1.8e-16 89.4 105 51.4
RcHm_v2.0_Chr2g0095821 Rosa chinensis HOM05D007531 ORTHO05D009484 2.3e-16 89.0 104 47.1
Gohir.A08G246700 Gossypium hirsutum HOM05D007531 ORTHO05D009484 5.1e-16 87.8 105 51.4
Nitab4.5_0001699g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 6.7e-16 87.4 100 48.0
MSTRG.19432 Avicennia marina HOM05D007531 ORTHO05D009484 8.8e-16 87.0 110 50.0
Gohir.D08G267900 Gossypium hirsutum HOM05D007531 ORTHO05D009484 8.8e-16 87.0 102 50.0
Atru.chr7.1757 Acer truncatum HOM05D007531 ORTHO05D009484 1.1e-15 86.7 105 48.6
PGSC0003DMG400013576 Solanum tuberosum HOM05D007531 ORTHO05D009484 1.5e-15 86.3 100 47.0
FvH4_1g09260 Fragaria vesca HOM05D007531 ORTHO05D009484 2.6e-15 85.5 107 45.8
FAN19G1112 Fragaria x ananassa HOM05D007531 ORTHO05D009484 2.6e-15 85.5 107 45.8
Nitab4.5_0007540g0040 Nicotiana tabacum HOM05D007531 ORTHO05D009484 3.3e-15 85.1 101 48.5
SalBow6G4078 Salvia bowleyana HOM05D007531 ORTHO05D009484 3.3e-15 85.1 109 45.0
Sopen07g022090 Solanum pennellii HOM05D007531 ORTHO05D009484 3.3e-15 85.1 100 47.0
CAN.G660.22 Capsicum annuum HOM05D007531 ORTHO05D009484 9.7e-15 83.6 103 46.6
DCAR_010491 Daucus carota HOM05D007531 ORTHO05D009484 9.7e-15 83.6 59 69.5
Solyc07g042450.3 Solanum lycopersicum HOM05D007531 ORTHO05D009484 9.7e-15 83.6 100 46.0
Oeu028116.1 Olea europaea HOM05D007531 ORTHO05D009484 1.3e-14 83.2 109 45.9
FAN28G0689 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.7e-14 82.8 104 45.2
Migut.L01591 Erythranthe guttata HOM05D007531 ORTHO05D009484 2.2e-14 82.4 105 44.8
unitig_578.g16405 Utricularia gibba HOM05D007531 ORTHO05D009484 2.2e-14 82.4 100 45.0
Cc06_g12620 Coffea canephora HOM05D007531 ORTHO05D009484 8.2e-14 80.5 116 47.4
Dinv25515 Davidia involucrata HOM05D007531 ORTHO05D009484 8.2e-14 80.5 80 56.2
TAR626G0337 Trochodendron aralioides HOM05D007531 ORTHO05D009484 8.2e-14 80.5 102 46.1
Aqoxy7G04136 Aquilegia oxysepala HOM05D007531 ORTHO05D009484 1.4e-13 79.7 102 49.0
Peaxi162Scf00191g01018 Petunia axillaris HOM05D007531 ORTHO05D009484 1.4e-13 79.7 100 50.0
QL11p002692 Quercus lobata HOM05D007531 ORTHO05D009484 3.1e-13 78.6 102 44.1
Sabra06G0107500 Salix brachista HOM05D007531 ORTHO05D009484 3.1e-13 78.6 43 79.1
Hma1.2p1_0519F.1_g171380 Hydrangea macrophylla HOM05D007531 ORTHO05D009484 5.3e-13 77.8 101 43.6
Actinidia39623 Actinidia chinensis HOM05D007531 ORTHO05D009484 7.0e-13 77.4 102 50.0
Lsat_1_v5_gn_7_35440 Lactuca sativa HOM05D007531 ORTHO05D009484 7.0e-13 77.4 104 48.1
CsaV3_5G027570 Cucumis sativus L. HOM05D007531 ORTHO05D009484 9.1e-13 77.0 87 56.3
ECA246G1013 Erigeron canadensis HOM05D007531 ORTHO05D009484 9.1e-13 77.0 60 60.0
ClCG11G000070 Citrullus lanatus HOM05D007531 ORTHO05D009484 1.2e-12 76.6 89 55.1
Lalb_Chr11g0074031 Lupinus albus HOM05D007531 ORTHO05D009484 1.6e-12 76.3 104 46.2
HPP92_021129 Vanilla planifolia HOM05D007531 ORTHO05D009484 1.0e-11 73.6 43 69.8
HPP92_021130 Vanilla planifolia HOM05D007531 ORTHO05D009484 1.0e-11 73.6 43 69.8
CDE06G0851 Ceratophyllum demersum HOM05D007531 ORTHO05D009484 1.3e-11 73.2 90 50.0
vmacro17085 Vaccinium macrocarpon HOM05D007531 ORTHO05D009484 1.3e-11 73.2 43 76.7
Medtr4g124770 Medicago truncatula HOM05D007531 ORTHO05D009484 8.5e-11 70.5 63 54.0
MBI19_g38003_MAGBIO Magnolia biondii HOM05D007531 ORTHO05D009484 1.5e-10 69.7 43 72.1
Sed0019513 Sechium edule HOM05D007531 ORTHO05D009484 1.9e-10 69.3 44 77.3
Lj4g0024105 Lotus japonicus HOM05D007531 ORTHO05D009484 2.5e-10 68.9 55 58.2
Psat0s2373g0160 Pisum sativum HOM05D007531 ORTHO05D009484 1.2e-09 66.6 54 57.4
TPR.G12718 Trifolium pratense HOM05D007531 ORTHO05D009484 1.6e-09 66.2 55 58.2
arahy.Tifrunner.gnm1.ann1.ETL5CI Arachis hypogaea HOM05D007531 ORTHO05D009484 2.1e-09 65.9 48 60.4
arahy.Tifrunner.gnm1.ann1.J82KAY Arachis hypogaea HOM05D007531 ORTHO05D009484 2.1e-09 65.9 48 60.4
Os01g0144700 Oryza sativa ssp. japonica HOM05D007531 ORTHO05D009484 6.1e-09 64.3 88 40.9
Phvul.004G046500 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 4.0e-08 61.6 53 52.8
Glyma.13G113300 Glycine max HOM05D007531 ORTHO05D009484 1.5e-07 59.7 47 57.4
Glyma.17G046400 Glycine max HOM05D007531 ORTHO05D009484 2.6e-07 58.9 48 56.2
VMungo1215G2546 Vigna mungo HOM05D007531 ORTHO05D009484 5.7e-07 57.8 41 56.1
Phvul.003G128000 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 9.7e-07 57.0 52 51.9


User provided reference genes

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