Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g16980 Schrenkiella parvula HOM05D003533 ORTHO05D004009 5.4e-87 324.3 168 100.0
AT1G19020 Arabidopsis thaliana HOM05D003533 ORTHO05D004009 1.9e-31 139.8 87 79.3
BcaB07g31922 Brassica carinata HOM05D003533 ORTHO05D004009 9.4e-31 137.5 89 79.8
CARHR019640 Cardamine hirsuta HOM05D003533 ORTHO05D004009 4.7e-30 135.2 89 77.5
AL1G31580 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 6.1e-30 134.8 87 74.7
Thhalv10009213m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 1.0e-29 134.0 89 79.8
A06p15230 Brassica napus HOM05D003533 ORTHO05D004009 2.6e-28 129.4 89 78.7
BraA06t24637Z Brassica rapa HOM05D003533 ORTHO05D004009 2.6e-28 129.4 89 78.7
BcaB03g14468 Brassica carinata HOM05D003533 ORTHO05D004009 3.4e-28 129.0 89 76.4
BcaB03g12939 Brassica carinata HOM05D003533 ORTHO05D004009 7.5e-28 127.9 90 73.3
A09p59550 Brassica napus HOM05D003533 ORTHO05D004009 1.7e-27 126.7 89 75.3
BcaC07g41276 Brassica carinata HOM05D003533 ORTHO05D004009 4.8e-27 125.2 90 78.9
Carub.0001s1865 Capsella rubella HOM05D003533 ORTHO05D004009 7.7e-25 117.9 87 67.8
A08p30040 Brassica napus HOM05D003533 ORTHO05D004009 1.0e-24 117.5 84 71.4
BraA08t34939Z Brassica rapa HOM05D003533 ORTHO05D004009 1.0e-24 117.5 84 71.4
BcaC05g25801 Brassica carinata HOM05D003533 ORTHO05D004009 2.2e-24 116.3 89 71.9
BcaC05g25802 Brassica carinata HOM05D003533 ORTHO05D004009 2.2e-24 116.3 89 71.9
C05p17410 Brassica napus HOM05D003533 ORTHO05D004009 2.2e-24 116.3 89 71.9
BolC5t30441H Brassica oleracea HOM05D003533 ORTHO05D004009 2.2e-24 116.3 89 71.9
C08p19120 Brassica napus HOM05D003533 ORTHO05D004009 1.6e-22 110.2 66 81.8
BolC8t49535H Brassica oleracea HOM05D003533 ORTHO05D004009 2.1e-22 109.8 66 81.8
C08p42830 Brassica napus HOM05D003533 ORTHO05D004009 1.8e-21 106.7 89 67.4
BolC8t51839H Brassica oleracea HOM05D003533 ORTHO05D004009 1.8e-21 106.7 89 67.4
BraA09t41332Z Brassica rapa HOM05D003533 ORTHO05D004009 4.0e-21 105.5 89 67.4
Aa31LG7G3800 Aethionema arabicum HOM05D006783 ORTHO05D008330 7.7e-17 91.3 82 58.5
THA.LOC109116474 Tarenaya hassleriana HOM05D003533 ORTHO05D004009 4.7e-14 82.0 86 53.5
TWI81G0654 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 8.0e-14 81.3 85 49.4
TWI15G0955 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 1.0e-13 80.9 85 47.1
CiPaw.12G022900 Carya illinoinensis HOM05D003533 ORTHO05D004009 2.3e-13 79.7 88 50.0
Lj4g0015145 Lotus japonicus HOM05D003533 ORTHO05D004009 2.3e-13 79.7 91 49.5
Oeu005690.1 Olea europaea HOM05D003533 ORTHO05D004009 4.0e-13 79.0 89 48.3
QL10p012332 Quercus lobata HOM05D003533 ORTHO05D004009 4.0e-13 79.0 89 48.3
Thecc.03G004200 Theobroma cacao HOM05D003533 ORTHO05D004009 4.0e-13 79.0 87 47.1
Oeu005054.1 Olea europaea HOM05D003533 ORTHO05D004009 5.2e-13 78.6 89 48.3
Glyma.05G033600 Glycine max HOM05D003533 ORTHO05D004009 6.8e-13 78.2 88 47.7
Sed0002579 Sechium edule HOM05D003533 ORTHO05D004009 8.9e-13 77.8 87 46.0
Manes.14G070400 Manihot esculenta HOM05D003533 ORTHO05D004009 1.2e-12 77.4 92 46.7
Medtr4g106500 Medicago truncatula HOM05D003533 ORTHO05D004009 1.5e-12 77.0 92 44.6
AL5G27512 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 2.6e-12 76.3 90 50.0
FvH4_4g35190 Fragaria vesca HOM05D003533 ORTHO05D004009 2.6e-12 76.3 83 47.0
FAN22G0766 Fragaria x ananassa HOM05D003533 ORTHO05D004009 2.6e-12 76.3 83 47.0
Thecc.03G004000 Theobroma cacao HOM05D003533 ORTHO05D004009 2.6e-12 76.3 87 46.0
Eucgr.K02881 Eucalyptus grandis HOM05D003533 ORTHO05D004009 3.4e-12 75.9 109 41.3
Glyma.17G093500 Glycine max HOM05D003533 ORTHO05D004009 3.4e-12 75.9 88 46.6
CiPaw.11G032200 Carya illinoinensis HOM05D003533 ORTHO05D004009 4.4e-12 75.5 87 48.3
COL.COLO4_21432 Corchorus olitorius HOM05D003533 ORTHO05D004009 4.4e-12 75.5 85 44.7
Phvul.003G196800 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 4.4e-12 75.5 86 46.5
Manes.06G100300 Manihot esculenta HOM05D003533 ORTHO05D004009 5.7e-12 75.1 92 44.6
Duzib084G0973 Durio zibethinus HOM05D003533 ORTHO05D004009 7.5e-12 74.7 88 45.5
FAN12G1992 Fragaria x ananassa HOM05D003533 ORTHO05D004009 7.5e-12 74.7 83 45.8
TAR622G1413 Trochodendron aralioides HOM05D003533 ORTHO05D004009 7.5e-12 74.7 87 44.8
Carub.0005s1428 Capsella rubella HOM05D003533 ORTHO05D004009 1.7e-11 73.6 87 46.0
FAN17G1844 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.7e-11 73.6 83 44.6
Sp5g13860 Schrenkiella parvula HOM05D003533 ORTHO05D004009 1.7e-11 73.6 87 46.0
FAN07G1024 Fragaria x ananassa HOM05D003533 ORTHO05D004009 2.2e-11 73.2 83 45.8
Aa31LG4G16780 Aethionema arabicum HOM05D003533 ORTHO05D004009 2.9e-11 72.8 87 48.3
MELO3C017124.2 Cucumis melo HOM05D003533 ORTHO05D004009 2.9e-11 72.8 82 48.8
Eucgr.B00337 Eucalyptus grandis HOM05D003533 ORTHO05D004009 2.9e-11 72.8 86 46.5
Thhalv10010873m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 2.9e-11 72.8 87 51.7
Migut.I00058 Erythranthe guttata HOM05D003533 ORTHO05D004009 4.9e-11 72.0 84 46.4
RcHm_v2.0_Chr4g0444801 Rosa chinensis HOM05D003533 ORTHO05D004009 4.9e-11 72.0 83 44.6
vmacro16587 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 6.4e-11 71.6 85 43.5
Lsat_1_v5_gn_1_11280 Lactuca sativa HOM05D003533 ORTHO05D004009 8.3e-11 71.2 86 43.0
Lsat_1_v5_gn_1_12101 Lactuca sativa HOM05D003533 ORTHO05D004009 1.1e-10 70.9 86 45.3
TPR.G37447 Trifolium pratense HOM05D003533 ORTHO05D004009 1.1e-10 70.9 83 45.8
ECA247G1125 Erigeron canadensis HOM05D003533 ORTHO05D004009 1.8e-10 70.1 87 41.4
PSO013G0065 Papaver somniferum HOM05D003533 ORTHO05D004009 1.8e-10 70.1 87 46.0
CANSAT54G2961 Cannabis sativa HOM05D003533 ORTHO05D004009 3.2e-10 69.3 85 44.7
CiPaw.06G076000 Carya illinoinensis HOM05D003533 ORTHO05D004009 3.2e-10 69.3 87 44.8
CiPaw.06G076200 Carya illinoinensis HOM05D003533 ORTHO05D004009 3.2e-10 69.3 87 44.8
THA.LOC109116673 Tarenaya hassleriana HOM05D003533 ORTHO05D004009 3.2e-10 69.3 87 48.3
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 3.2e-10 69.3 87 39.1
CARHR156900 Cardamine hirsuta HOM05D003533 ORTHO05D004009 5.4e-10 68.6 87 48.3
Glyma.04G178500 Glycine max HOM05D003533 ORTHO05D004009 7.0e-10 68.2 88 44.3
FAN18G0586 Fragaria x ananassa HOM05D003533 ORTHO05D004009 9.2e-10 67.8 83 44.6
Medtr3g078420 Medicago truncatula HOM05D003533 ORTHO05D004009 9.2e-10 67.8 88 43.2
HanXRQChr09g0237871 Helianthus annuus HOM05D003533 ORTHO05D004009 1.2e-09 67.4 87 40.2
CSS0013527 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 1.6e-09 67.0 85 42.4
CSS0016862 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 1.6e-09 67.0 85 42.4
CiPaw.06G076100 Carya illinoinensis HOM05D003533 ORTHO05D004009 2.7e-09 66.2 87 43.7
Glyma.06G186200 Glycine max HOM05D003533 ORTHO05D004009 4.6e-09 65.5 88 43.2
HanXRQChr09g0271891 Helianthus annuus HOM05D003533 ORTHO05D004009 4.6e-09 65.5 51 56.9
Lalb_Chr12g0201351 Lupinus albus HOM05D003533 ORTHO05D004009 5.9e-09 65.1 78 43.6
Lalb_Chr12g0201361 Lupinus albus HOM05D003533 ORTHO05D004009 5.9e-09 65.1 85 41.2
Nitab4.5_0002059g0090 Nicotiana tabacum HOM05D003533 ORTHO05D004009 5.9e-09 65.1 91 39.6
PSO013G0048 Papaver somniferum HOM05D003533 ORTHO05D004009 5.9e-09 65.1 85 44.7
Peaxi162Scf01141g00003 Petunia axillaris HOM05D003533 ORTHO05D004009 5.9e-09 65.1 180 31.1
TAR629G1875 Trochodendron aralioides HOM05D003533 ORTHO05D004009 5.9e-09 65.1 87 41.4
QL03p067197 Quercus lobata HOM05D003533 ORTHO05D004009 7.8e-09 64.7 86 40.7
CiPaw.06G076300 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.0e-08 64.3 87 42.5
Phvul.009G182200 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 1.0e-08 64.3 88 42.0
Psat0s489g0040 Pisum sativum HOM05D003533 ORTHO05D004009 1.0e-08 64.3 85 41.2
Rhsim12G0161500 Rhododendron simsii HOM05D003533 ORTHO05D004009 1.0e-08 64.3 89 44.9
Ca_16210_v3 Cicer arietinum L. HOM05D003533 ORTHO05D004009 1.3e-08 63.9 88 38.6
FAN13G2147 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.3e-08 63.9 83 42.2
Rhsim12G0161400 Rhododendron simsii HOM05D003533 ORTHO05D004009 1.3e-08 63.9 87 44.8
Hma1.2p1_0160F.1_g070540 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 1.7e-08 63.5 87 40.2
Prupe.5G179600 Prunus persica HOM05D003533 ORTHO05D004009 1.7e-08 63.5 80 43.8
TPR.G31485 Trifolium pratense HOM05D003533 ORTHO05D004009 1.7e-08 63.5 87 40.2
Lsat_1_v5_gn_1_11220 Lactuca sativa HOM05D003533 ORTHO05D004009 2.3e-08 63.2 86 40.7
Hma1.2p1_0002F.1_g002860 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 3.0e-08 62.8 84 39.3
MD14G1187200 Malus domestica HOM05D003533 ORTHO05D004009 3.0e-08 62.8 87 42.5
Oeu017591.1 Olea europaea HOM05D003533 ORTHO05D004009 3.0e-08 62.8 90 40.0
PGR083G0433 Punica granatum HOM05D003533 ORTHO05D004009 3.0e-08 62.8 87 42.5
CsaV3_1G001820 Cucumis sativus L. HOM05D003533 ORTHO05D004009 3.9e-08 62.4 82 36.6
MD06G1181300 Malus domestica HOM05D003533 ORTHO05D004009 3.9e-08 62.4 83 43.4
Rhsim12G0161300 Rhododendron simsii HOM05D003533 ORTHO05D004009 6.6e-08 61.6 84 45.2
MD16G1084900 Malus domestica HOM05D003533 ORTHO05D004009 8.6e-08 61.2 83 38.6
Lj1g0014022 Lotus japonicus HOM05D003533 ORTHO05D004009 1.1e-07 60.8 87 40.2
BcaC01g02313 Brassica carinata HOM05D013399 ORTHO05D004009 1.5e-07 60.5 87 41.4
BolC3t18939H Brassica oleracea HOM05D013399 ORTHO05D004009 1.5e-07 60.5 87 41.4
Sc04g0002090 Simmondsia chinensis HOM05D003533 ORTHO05D004009 1.9e-07 60.1 85 44.7
Actinidia19080 Actinidia chinensis HOM05D003533 ORTHO05D004009 2.5e-07 59.7 162 30.9
SalBow2G1603 Salvia bowleyana HOM05D003533 ORTHO05D004009 3.3e-07 59.3 84 44.0
SalBow2G3186 Salvia bowleyana HOM05D003533 ORTHO05D004009 3.3e-07 59.3 84 44.0
Aqoxy3G03117 Aquilegia oxysepala HOM05D003533 ORTHO05D004009 4.3e-07 58.9 86 43.0
Atru.chr11.1939 Acer truncatum HOM05D003533 ORTHO05D004009 5.6e-07 58.5 85 36.5
Ah.02g112790 Amaranthus hybridus HOM05D003533 ORTHO05D004009 5.6e-07 58.5 83 42.2
Cc11_g14110 Coffea canephora HOM05D003533 ORTHO05D004009 5.6e-07 58.5 83 39.8
COL.COLO4_37881 Corchorus olitorius HOM05D003533 ORTHO05D004009 5.6e-07 58.5 85 41.2
THA.LOC104821473 Tarenaya hassleriana HOM05D003533 ORTHO05D004009 5.6e-07 58.5 83 41.0
BraA06t25683Z Brassica rapa HOM05D013399 ORTHO05D004009 7.3e-07 58.2 87 39.1
Ciclev10033215m.g Citrus clementina HOM05D003533 ORTHO05D004009 7.3e-07 58.2 89 37.1
Nitab4.5_0002312g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 7.3e-07 58.2 91 38.5
ATR0712G042 Amborella trichopoda HOM05D003533 ORTHO05D004009 9.5e-07 57.8 82 39.0
ECA247G3580 Erigeron canadensis HOM05D003533 ORTHO05D004009 9.5e-07 57.8 83 36.1
Gohir.D05G321600 Gossypium hirsutum HOM05D003533 ORTHO05D004009 9.5e-07 57.8 85 42.4
Gorai.009G345100 Gossypium raimondii HOM05D003533 ORTHO05D004009 9.5e-07 57.8 85 42.4
Cfa009093 Carpinus fangiana HOM05D003533 ORTHO05D004009 1.2e-06 57.4 86 39.5
Gohir.A05G319400 Gossypium hirsutum HOM05D003533 ORTHO05D004009 1.2e-06 57.4 85 41.2
Nitab4.5_0002059g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.2e-06 57.4 85 37.6
Ciclev10023101m.g Citrus clementina HOM05D003533 ORTHO05D004009 1.6e-06 57.0 85 35.3
MBI14_g31145_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 1.6e-06 57.0 85 40.0
unitig_22.g6479 Utricularia gibba HOM05D003533 ORTHO05D004009 1.6e-06 57.0 85 38.8
MBI14_g31147_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 2.1e-06 56.6 85 42.4
A06p27440 Brassica napus HOM05D013399 ORTHO05D004009 2.8e-06 56.2 87 37.9
HanXRQChr04g0107311 Helianthus annuus HOM05D003533 ORTHO05D004009 2.8e-06 56.2 48 50.0
Solyc05g006390.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 4.7e-06 55.5 85 37.6
Sopen05g002310 Solanum pennellii HOM05D003533 ORTHO05D004009 6.2e-06 55.1 85 37.6
Zm00001eb254120 Zea mays HOM05D003533 ORTHO05D004009 6.2e-06 55.1 88 39.8
Actinidia34961 Actinidia chinensis HOM05D003533 ORTHO05D004009 8.0e-06 54.7 99 35.4


User provided reference genes

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