Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g16740 Schrenkiella parvula HOM05D007067 ORTHO05D008864 7.9e-97 357.1 176 100.0
C05p17040 Brassica napus HOM05D007067 ORTHO05D008864 5.9e-92 340.9 176 96.0
BolC5t30410H Brassica oleracea HOM05D007067 ORTHO05D008864 5.9e-92 340.9 176 96.0
CARHR019370 Cardamine hirsuta HOM05D007067 ORTHO05D008864 4.2e-90 334.7 176 93.8
AL1G31200 Arabidopsis lyrata HOM05D007067 ORTHO05D008864 7.2e-90 334.0 176 94.9
A06p14840 Brassica napus HOM05D007067 ORTHO05D008864 1.6e-89 332.8 176 94.3
BraA06t24606Z Brassica rapa HOM05D007067 ORTHO05D008864 1.6e-89 332.8 176 94.3
Thhalv10008902m.g Eutrema salsugineum HOM05D007067 ORTHO05D008864 2.1e-89 332.4 176 93.2
BcaB07g31890 Brassica carinata HOM05D007067 ORTHO05D008864 1.8e-88 329.3 178 94.4
BcaC05g25773 Brassica carinata HOM05D007067 ORTHO05D008864 1.8e-88 329.3 176 94.3
AT1G18730 Arabidopsis thaliana HOM05D007067 ORTHO05D008864 2.0e-87 325.9 176 91.5
Carub.0001s1838 Capsella rubella HOM05D007067 ORTHO05D008864 2.0e-87 325.9 177 92.1
BcaB03g14481 Brassica carinata HOM05D007067 ORTHO05D008864 3.7e-86 321.6 177 92.1
A09p59720 Brassica napus HOM05D007067 ORTHO05D008864 8.2e-86 320.5 176 91.5
BraA09t41348Z Brassica rapa HOM05D007067 ORTHO05D008864 8.2e-86 320.5 176 91.5
C08p43060 Brassica napus HOM05D007067 ORTHO05D008864 1.1e-85 320.1 176 91.5
BolC8t51861H Brassica oleracea HOM05D007067 ORTHO05D008864 7.0e-77 290.8 181 85.1
THA.LOC104808257 Tarenaya hassleriana HOM05D007067 ORTHO05D008864 5.2e-64 248.1 187 72.2
BcaC07g41296 Brassica carinata HOM05D007067 ORTHO05D008864 2.5e-58 229.2 140 82.9
Aa31LG7G3520 Aethionema arabicum HOM05D007067 ORTHO05D008864 2.1e-57 226.1 116 90.5
CSS0040643 Camellia sinensis var. sinensis HOM05D007067 ORTHO05D008864 3.7e-54 215.3 187 63.1
TWI60G1483 Tripterygium wilfordii HOM05D007067 ORTHO05D008864 3.2e-53 212.2 187 63.1
Potri.012G068500 Populus trichocarpa HOM05D007067 ORTHO05D008864 1.2e-52 210.3 182 61.0
Cpa.g.sc111.20 Carica papaya HOM05D007067 ORTHO05D008864 1.0e-51 207.2 182 63.2
Sabra12G0047100 Salix brachista HOM05D007067 ORTHO05D008864 1.7e-51 206.5 184 61.4
Cc04_g16320 Coffea canephora HOM05D007067 ORTHO05D008864 3.0e-51 205.7 130 75.4
Eucgr.K02487 Eucalyptus grandis HOM05D007067 ORTHO05D008864 3.0e-51 205.7 181 61.3
SalBow3G2729 Salvia bowleyana HOM05D007067 ORTHO05D008864 5.0e-51 204.9 176 64.2
MD14G1202700 Malus domestica HOM05D007067 ORTHO05D008864 6.6e-51 204.5 184 60.9
Duzib205G1209 Durio zibethinus HOM05D007067 ORTHO05D008864 8.6e-51 204.1 192 59.9
Manes.06G091000 Manihot esculenta HOM05D007067 ORTHO05D008864 1.5e-50 203.4 186 60.8
Solyc12g036170.2 Solanum lycopersicum HOM05D007067 ORTHO05D008864 1.5e-50 203.4 171 63.7
MD06G1195600 Malus domestica HOM05D007067 ORTHO05D008864 1.9e-50 203.0 183 61.2
GSVIVG01004672001 Vitis vinifera HOM05D007067 ORTHO05D008864 2.5e-50 202.6 187 59.9
GSVIVG01005334001 Vitis vinifera HOM05D007067 ORTHO05D008864 2.5e-50 202.6 187 59.9
Thecc.03G091100 Theobroma cacao HOM05D007067 ORTHO05D008864 5.6e-50 201.4 186 60.2
Prupe.5G195500 Prunus persica HOM05D007067 ORTHO05D008864 7.3e-50 201.1 183 60.1
Migut.D01803 Erythranthe guttata HOM05D007067 ORTHO05D008864 1.2e-49 200.3 186 58.1
Nn3g17293 Nelumbo nucifera HOM05D007067 ORTHO05D008864 1.2e-49 200.3 188 58.0
TAR622G0622 Trochodendron aralioides HOM05D007067 ORTHO05D008864 1.2e-49 200.3 188 59.6
Hma1.2p1_0637F.1_g193620 Hydrangea macrophylla HOM05D007067 ORTHO05D008864 1.6e-49 199.9 129 76.0
EL10Ac5g11044 Beta vulgaris HOM05D007067 ORTHO05D008864 2.8e-49 199.1 187 61.0
PGSC0003DMG400021933 Solanum tuberosum HOM05D007067 ORTHO05D008864 2.8e-49 199.1 170 63.5
AUR62008437 Chenopodium quinoa HOM05D007067 ORTHO05D008864 3.6e-49 198.7 127 74.8
Actinidia04879 Actinidia chinensis HOM05D007067 ORTHO05D008864 4.7e-49 198.4 184 58.2
CAN.G846.12 Capsicum annuum HOM05D007067 ORTHO05D008864 6.2e-49 198.0 179 60.9
Nitab4.5_0003381g0030 Nicotiana tabacum HOM05D007067 ORTHO05D008864 6.2e-49 198.0 120 79.2
Nitab4.5_0005226g0040 Nicotiana tabacum HOM05D007067 ORTHO05D008864 6.2e-49 198.0 120 79.2
MSTRG.9621 Avicennia marina HOM05D007067 ORTHO05D008864 1.8e-48 196.4 183 56.8
MBI02_g12272_MAGBIO Magnolia biondii HOM05D007067 ORTHO05D008864 1.8e-48 196.4 186 57.5
Peaxi162Scf00106g00326 Petunia axillaris HOM05D007067 ORTHO05D008864 2.3e-48 196.1 120 78.3
Sopen12g016290 Solanum pennellii HOM05D007067 ORTHO05D008864 4.0e-48 195.3 171 61.4
Gohir.D03G093800 Gossypium hirsutum HOM05D007067 ORTHO05D008864 5.2e-48 194.9 139 71.2
Atru.chr9.195 Acer truncatum HOM05D007067 ORTHO05D008864 6.8e-48 194.5 176 61.4
Medtr3g435320 Medicago truncatula HOM05D007067 ORTHO05D008864 6.8e-48 194.5 178 59.0
CiPaw.11G046200 Carya illinoinensis HOM05D007067 ORTHO05D008864 8.9e-48 194.1 182 59.3
Gohir.A03G067300 Gossypium hirsutum HOM05D007067 ORTHO05D008864 8.9e-48 194.1 139 71.2
Gorai.003G097800 Gossypium raimondii HOM05D007067 ORTHO05D008864 8.9e-48 194.1 139 71.2
Lj5A109T72 Lonicera japonica HOM05D007067 ORTHO05D008864 8.9e-48 194.1 129 72.1
DCAR_016569 Daucus carota HOM05D007067 ORTHO05D008864 1.2e-47 193.7 192 58.9
Rhsim08G0153200 Rhododendron simsii HOM05D007067 ORTHO05D008864 1.2e-47 193.7 181 59.7
Lsat_1_v5_gn_5_20880 Lactuca sativa HOM05D007067 ORTHO05D008864 1.5e-47 193.4 117 78.6
CANSAT56G4102 Cannabis sativa HOM05D007067 ORTHO05D008864 2.0e-47 193.0 189 58.7
Cfa018925 Carpinus fangiana HOM05D007067 ORTHO05D008864 2.0e-47 193.0 127 74.8
Lalb_Chr08g0235641 Lupinus albus HOM05D007067 ORTHO05D008864 2.0e-47 193.0 188 56.4
QL10p017305 Quercus lobata HOM05D007067 ORTHO05D008864 2.6e-47 192.6 186 57.5
Sed0012968 Sechium edule HOM05D007067 ORTHO05D008864 2.6e-47 192.6 183 59.0
vmacro17532 Vaccinium macrocarpon HOM05D007067 ORTHO05D008864 2.6e-47 192.6 181 58.0
PSO063G5395 Papaver somniferum HOM05D007067 ORTHO05D008864 3.4e-47 192.2 130 70.8
PSO832G0421 Papaver somniferum HOM05D007067 ORTHO05D008864 3.4e-47 192.2 130 70.8
RcHm_v2.0_Chr7g0181701 Rosa chinensis HOM05D007067 ORTHO05D008864 7.5e-47 191.0 186 57.0
CDE02G3919 Ceratophyllum demersum HOM05D007067 ORTHO05D008864 1.3e-46 190.3 124 75.0
FAN13G0188 Fragaria x ananassa HOM05D007067 ORTHO05D008864 1.7e-46 189.9 186 57.0
TPR.G11876 Trifolium pratense HOM05D007067 ORTHO05D008864 1.7e-46 189.9 182 57.7
FAN18G1220 Fragaria x ananassa HOM05D007067 ORTHO05D008864 2.2e-46 189.5 186 57.0
FAN08G0270 Fragaria x ananassa HOM05D007067 ORTHO05D008864 2.9e-46 189.1 186 57.0
Lj1g0007284 Lotus japonicus HOM05D007067 ORTHO05D008864 2.9e-46 189.1 182 56.6
Aqoxy3G00483 Aquilegia oxysepala HOM05D007067 ORTHO05D008864 3.7e-46 188.7 183 55.7
HanXRQChr05g0156061 Helianthus annuus HOM05D007067 ORTHO05D008864 4.9e-46 188.3 183 57.4
ECA246G0430 Erigeron canadensis HOM05D007067 ORTHO05D008864 6.4e-46 188.0 181 55.8
Glyma.04G167400 Glycine max HOM05D007067 ORTHO05D008864 6.4e-46 188.0 188 58.5
Glyma.06G195200 Glycine max HOM05D007067 ORTHO05D008864 6.4e-46 188.0 188 57.4
unitig_0.g778 Utricularia gibba HOM05D007067 ORTHO05D008864 8.3e-46 187.6 182 57.7
Ca_27682_v3 Cicer arietinum L. HOM05D007067 ORTHO05D008864 1.1e-45 187.2 182 58.2
Peaxi162Scf00106g00037 Petunia axillaris HOM05D007067 ORTHO05D008864 1.4e-45 186.8 111 78.4
Psat5g201280 Pisum sativum HOM05D007067 ORTHO05D008864 1.4e-45 186.8 182 54.9
ClCG06G016120 Citrullus lanatus HOM05D007067 ORTHO05D008864 5.4e-45 184.9 183 56.8
MELO3C017182.2 Cucumis melo HOM05D007067 ORTHO05D008864 5.4e-45 184.9 183 59.0
PGR044G1431 Punica granatum HOM05D007067 ORTHO05D008864 5.4e-45 184.9 126 71.4
Dinv38731 Davidia involucrata HOM05D007067 ORTHO05D008864 9.2e-45 184.1 175 55.4
CsaV3_1G002440 Cucumis sativus L. HOM05D007067 ORTHO05D008864 1.2e-44 183.7 183 59.0
CDE09G1053 Ceratophyllum demersum HOM05D007067 ORTHO05D008864 4.6e-44 181.8 129 69.8
MBI02_g23462_MAGBIO Magnolia biondii HOM05D007067 ORTHO05D008864 6.6e-43 177.9 107 76.6
Phvul.009G186200 Phaseolus vulgaris HOM05D007067 ORTHO05D008864 1.9e-42 176.4 182 57.7
ATR0564G121 Amborella trichopoda HOM05D007067 ORTHO05D008864 5.6e-42 174.9 170 57.1
Eucgr.K02485 Eucalyptus grandis HOM05D007067 ORTHO05D008864 5.6e-42 174.9 168 56.5
arahy.Tifrunner.gnm1.ann1.V8ZK3N Arachis hypogaea HOM05D007067 ORTHO05D008864 1.2e-41 173.7 182 55.5
arahy.Tifrunner.gnm1.ann1.JMB3VF Arachis hypogaea HOM05D007067 ORTHO05D008864 3.6e-41 172.2 182 55.5
Os02g0744000 Oryza sativa ssp. japonica HOM05D007067 ORTHO05D008864 1.5e-34 150.2 132 55.3
Zm00001eb254450 Zea mays HOM05D007067 ORTHO05D008864 1.9e-34 149.8 111 63.1
AUR62021654 Chenopodium quinoa HOM05D007067 ORTHO05D008864 1.4e-32 143.7 152 54.6
COL.COLO4_28333 Corchorus olitorius HOM05D007067 ORTHO05D008864 4.4e-31 138.7 179 52.0
SEGI_39094 Sequoiadendron giganteum HOM05D007067 ORTHO05D008864 1.2e-25 120.6 141 48.9
CBR_g30507 Chara braunii HOM05D007067 ORTHO05D008864 5.8e-23 111.7 132 46.2
Mapoly0149s0008 Marchantia polymorpha HOM05D007067 ORTHO05D008864 6.0e-20 101.7 97 47.4
Rhsim08G0153500 Rhododendron simsii HOM05D007067 ORTHO05D008864 6.0e-20 101.7 61 82.0
Pp3c16_3930 Physcomitrium patens HOM05D007067 ORTHO05D008864 3.0e-19 99.4 137 42.3
Ciclev10022880m.g Citrus clementina HOM05D007067 ORTHO05D008864 6.6e-19 98.2 119 47.9
FvH4_5g14690 Fragaria vesca HOM05D007067 ORTHO05D008864 1.5e-15 87.0 125 44.0
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.3e-09 67.4 63 63.5
Ah.11g048310 Amaranthus hybridus HOM05D007067 ORTHO05D008864 2.9e-06 56.2 100 40.0


User provided reference genes

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