Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 2.1e-166 589.0 297 100.0
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 3.7e-155 551.6 297 93.9
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 2.4e-154 548.9 297 94.6
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 3.1e-154 548.5 297 92.3
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 1.2e-153 546.6 297 91.9
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 1.1e-151 540.0 297 92.3
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 1.1e-151 540.0 297 92.3
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 1.1e-151 540.0 297 92.3
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 2.1e-150 535.8 297 91.9
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 3.0e-149 531.9 298 91.9
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 5.7e-148 527.7 297 89.9
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 1.7e-147 526.2 297 90.6
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 2.2e-147 525.8 297 90.2
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 7.0e-146 520.8 294 89.8
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 5.7e-140 501.1 332 78.6
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 1.8e-138 496.1 347 76.4
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 7.5e-132 474.2 297 81.5
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 4.7e-126 454.9 260 88.5
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 4.7e-126 454.9 260 88.5
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 4.7e-118 428.3 260 83.5
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 8.1e-118 427.6 297 73.1
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 1.2e-116 423.7 297 72.4
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.5e-116 423.3 297 71.4
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 3.4e-116 422.2 297 72.4
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 3.4e-116 422.2 297 71.0
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.3e-115 420.2 297 70.7
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 2.2e-115 419.5 297 71.0
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 2.4e-114 416.0 297 71.0
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 4.1e-114 415.2 297 69.7
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 2.7e-113 412.5 298 72.5
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 2.3e-112 409.5 297 69.7
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 3.9e-112 408.7 297 71.4
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 8.6e-112 407.5 299 69.9
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 7.3e-111 404.4 297 69.4
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 4.7e-110 401.7 296 69.6
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 6.2e-110 401.4 297 69.0
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 8.1e-110 401.0 297 68.4
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 2.4e-109 399.4 255 76.5
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 3.1e-109 399.1 302 69.2
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 4.0e-109 398.7 297 68.7
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 5.2e-109 398.3 302 69.2
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 5.2e-109 398.3 297 69.7
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 5.2e-109 398.3 300 69.3
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 6.8e-109 397.9 298 70.1
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 8.9e-109 397.5 297 67.7
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 1.5e-108 396.7 298 67.1
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 2.6e-108 396.0 297 69.4
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 2.6e-108 396.0 297 69.4
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 3.4e-108 395.6 298 67.1
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 7.6e-108 394.4 259 74.9
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 1.3e-107 393.7 297 69.0
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 1.3e-107 393.7 285 70.9
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 3.8e-107 392.1 252 76.2
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 1.1e-106 390.6 297 65.3
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 1.1e-106 390.6 298 66.1
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 1.4e-106 390.2 255 74.5
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 1.9e-106 389.8 297 68.7
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 3.2e-106 389.0 312 65.7
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 5.4e-106 388.3 257 72.8
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 5.4e-106 388.3 296 68.9
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 5.4e-106 388.3 252 76.2
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 7.1e-106 387.9 297 68.4
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 7.1e-106 387.9 296 68.2
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 7.1e-106 387.9 259 73.0
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 1.6e-105 386.7 298 65.1
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 2.7e-105 386.0 258 73.6
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 4.6e-105 385.2 306 66.0
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 7.8e-105 384.4 255 74.9
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 1.0e-104 384.0 274 68.6
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 1.0e-104 384.0 336 62.2
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 1.3e-104 383.6 299 65.2
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 3.9e-104 382.1 301 65.8
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 5.1e-104 381.7 257 72.8
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 5.1e-104 381.7 252 75.0
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 6.6e-104 381.3 303 65.7
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 8.7e-104 380.9 247 76.1
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 1.1e-103 380.6 281 70.5
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 1.5e-103 380.2 233 79.0
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 2.5e-103 379.4 297 66.3
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 2.5e-103 379.4 233 79.4
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 3.3e-103 379.0 295 65.4
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 1.2e-102 377.1 233 78.5
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 1.6e-102 376.7 296 66.6
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 3.6e-102 375.6 297 66.3
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 3.6e-102 375.6 295 65.1
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 4.7e-102 375.2 295 64.7
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 6.2e-102 374.8 273 70.3
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 1.1e-101 374.0 260 70.8
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 1.8e-101 373.2 233 76.8
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 3.1e-101 372.5 315 63.5
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 4.0e-101 372.1 255 72.2
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 6.9e-101 371.3 256 71.1
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 1.2e-100 370.5 245 73.1
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 1.5e-100 370.2 303 66.7
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.5e-100 370.2 296 64.5
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 9.9e-100 367.5 233 77.3
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 1.3e-99 367.1 256 70.7
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 2.9e-99 365.9 367 55.6
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 2.4e-98 362.8 258 68.6
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 9.3e-98 360.9 252 71.8
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 3.5e-97 359.0 284 65.1
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 1.3e-96 357.1 221 78.7
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 2.3e-96 356.3 299 62.5
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 1.1e-95 354.0 296 64.9
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 3.3e-95 352.4 299 61.2
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 1.1e-93 347.4 297 62.0
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 5.3e-93 345.1 224 74.1
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 7.6e-92 341.3 243 69.1
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 2.2e-91 339.7 297 62.6
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 6.4e-91 338.2 251 67.3
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 2.4e-90 336.3 275 63.3
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 9.3e-90 334.3 203 79.8
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 1.6e-89 333.6 226 72.6
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 5.6e-87 325.1 287 61.3
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 4.5e-84 315.5 223 68.6
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 2.9e-83 312.8 227 66.5
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 1.4e-82 310.5 257 61.1
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 2.5e-82 309.7 289 56.1
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 1.6e-81 307.0 256 63.3
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 4.3e-79 298.9 232 64.7
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 1.3e-78 297.4 261 60.9
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 6.2e-78 295.0 202 71.3
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 6.9e-77 291.6 243 60.9
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 9.4e-66 254.6 288 51.7
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 4.6e-65 252.3 230 56.5
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 1.8e-64 250.4 224 56.2
CDE07G0155 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 1.1e-63 247.7 245 49.0
Lj7A653T48 Lonicera japonica HOM05D004985 ORTHO05D005912 9.4e-58 228.0 142 78.9
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.0e-56 224.6 214 52.8
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.0e-56 224.6 214 52.8
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 2.3e-56 223.4 430 36.0
SGA_v2.0_scaffold3G01460 Striga asiatica HOM05D004985 ORTHO05D005912 4.8e-54 215.7 142 73.9
Nitab4.5_0002968g0050 Nicotiana tabacum HOM05D004985 ORTHO05D005912 7.7e-52 208.4 133 75.2
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.2e-49 201.1 273 40.7
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 3.0e-48 196.4 237 43.5
HPP92_012184 Vanilla planifolia HOM05D004985 ORTHO05D005912 6.7e-48 195.3 188 53.7
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.1e-45 188.0 231 43.3
Haze_07724 Corylus avellana HOM05D004985 ORTHO05D005912 1.3e-43 181.0 162 58.0
EL10Ac1g02367 Beta vulgaris HOM05D004985 ORTHO05D005912 2.2e-43 180.3 138 67.4
HPP92_012182 Vanilla planifolia HOM05D004985 ORTHO05D005912 1.1e-37 161.4 112 72.3
Gohir.A07G164340 Gossypium hirsutum HOM05D004985 ORTHO05D005912 2.0e-36 157.1 97 80.4
SGA_v2.0_scaffold1066G53824 Striga asiatica HOM05D004985 ORTHO05D005912 2.0e-36 157.1 147 56.5
Gohir.A06G085600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 4.2e-34 149.4 97 78.4
CBR_g37694 Chara braunii HOM05D004985 ORTHO05D005912 3.0e-32 143.3 109 63.3
SEGI_10948 Sequoiadendron giganteum HOM05D004985 ORTHO05D005912 3.7e-30 136.3 139 53.2
SalBow5G1356 Salvia bowleyana HOM05D004985 ORTHO05D005912 2.8e-25 120.2 101 65.3
Oeu014405.1 Olea europaea HOM05D004985 ORTHO05D005912 1.0e-24 118.2 92 68.5
Cfa004103 Carpinus fangiana HOM05D004985 ORTHO05D005912 1.5e-23 114.4 162 43.2
Peaxi162Scf00086g01110 Petunia axillaris HOM05D004985 ORTHO05D005912 3.2e-21 106.7 116 52.6
Haze_15308 Corylus avellana HOM05D004985 ORTHO05D005912 1.9e-18 97.4 67 70.1
SHI27080 Sapria himalayana HOM05D004985 ORTHO05D005912 2.0e-15 87.4 77 54.5
Cfa024059 Carpinus fangiana HOM05D004985 ORTHO05D005912 2.0e-07 60.8 176 33.0


User provided reference genes

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