Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g16570 Schrenkiella parvula HOM05D004908 ORTHO05D006418 8.1e-191 670.2 337 100.0
Thhalv10008142m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 7.1e-163 577.4 337 85.8
AT1G18600 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 2.3e-161 572.4 337 85.5
BcaB07g31879 Brassica carinata HOM05D004908 ORTHO05D006418 3.0e-161 572.0 341 85.9
CARHR019220 Cardamine hirsuta HOM05D004908 ORTHO05D006418 5.1e-161 571.2 338 84.9
AL1G31040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 3.7e-159 565.1 337 83.7
Carub.0001s1823 Capsella rubella HOM05D004908 ORTHO05D006418 4.8e-159 564.7 337 84.0
A06p14680 Brassica napus HOM05D004908 ORTHO05D006418 2.6e-157 558.9 338 85.2
BraA06t24593Z Brassica rapa HOM05D004908 ORTHO05D006418 2.6e-157 558.9 338 85.2
BcaC05g25755 Brassica carinata HOM05D004908 ORTHO05D006418 2.7e-154 548.9 339 84.1
C05p16860 Brassica napus HOM05D004908 ORTHO05D006418 2.7e-154 548.9 339 84.1
BolC5t30387H Brassica oleracea HOM05D004908 ORTHO05D006418 8.8e-153 543.9 337 84.6
Aa31LG7G3360 Aethionema arabicum HOM05D004908 ORTHO05D006418 3.8e-140 501.9 340 75.9
THA.LOC104808039 Tarenaya hassleriana HOM05D004908 ORTHO05D006418 1.5e-120 436.8 341 70.7
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 1.5e-96 357.1 334 60.8
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 3.7e-95 352.4 351 58.4
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 9.2e-94 347.8 351 57.0
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 3.5e-93 345.9 316 58.9
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 5.1e-92 342.0 257 66.9
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 8.6e-92 341.3 243 69.5
Hma1.2p1_0060F.1_g032940 Hydrangea macrophylla HOM05D004908 ORTHO05D006418 3.3e-91 339.3 328 56.7
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 5.6e-91 338.6 332 58.7
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 1.6e-90 337.0 343 56.3
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 2.8e-90 336.3 318 59.1
Sabra06G0175900 Salix brachista HOM05D004908 ORTHO05D006418 3.6e-90 335.9 333 58.6
QL10p019966 Quercus lobata HOM05D004908 ORTHO05D006418 4.7e-90 335.5 343 56.3
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 6.2e-90 335.1 342 56.1
Cfa019355 Carpinus fangiana HOM05D004908 ORTHO05D006418 1.1e-89 334.3 350 56.6
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 1.4e-89 334.0 342 56.7
CiPaw.12G009100 Carya illinoinensis HOM05D004908 ORTHO05D006418 8.9e-89 331.3 238 70.2
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 3.4e-88 329.3 343 56.9
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 5.8e-88 328.6 328 56.1
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 1.3e-87 327.4 354 55.1
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 2.9e-87 326.2 286 60.5
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 2.9e-87 326.2 330 56.4
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 6.4e-87 325.1 282 61.3
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 6.4e-87 325.1 316 56.6
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 4.1e-86 322.4 233 70.4
Haze_07746 Corylus avellana HOM05D004908 ORTHO05D006418 1.0e-84 317.8 375 52.8
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 1.7e-84 317.0 278 57.6
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 5.1e-84 315.5 209 75.1
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 1.1e-83 314.3 316 56.0
Ah.11g047620 Amaranthus hybridus HOM05D004908 ORTHO05D006418 1.5e-83 313.9 305 55.1
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 4.3e-83 312.4 331 52.3
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 7.3e-83 311.6 320 54.7
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 2.8e-82 309.7 351 51.6
Lsat_1_v5_gn_5_22901 Lactuca sativa HOM05D004908 ORTHO05D006418 6.8e-81 305.1 237 63.3
AUR62039652 Chenopodium quinoa HOM05D004908 ORTHO05D006418 8.9e-81 304.7 328 53.7
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 8.9e-81 304.7 336 54.2
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 2.0e-80 303.5 350 52.6
Duzib068G0428 Durio zibethinus HOM05D004908 ORTHO05D006418 1.3e-79 300.8 342 51.8
ECA246G3883 Erigeron canadensis HOM05D004908 ORTHO05D006418 6.4e-79 298.5 237 63.7
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 8.4e-79 298.1 321 53.6
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 1.1e-78 297.7 345 51.0
TPR.G1983 Trifolium pratense HOM05D004908 ORTHO05D006418 3.2e-78 296.2 228 65.8
HanXRQChr05g0153521 Helianthus annuus HOM05D004908 ORTHO05D006418 5.4e-78 295.4 334 50.0
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 5.4e-78 295.4 337 49.0
AUR62021531 Chenopodium quinoa HOM05D004908 ORTHO05D006418 7.1e-78 295.0 335 51.3
Peaxi162Scf01223g00009 Petunia axillaris HOM05D004908 ORTHO05D006418 3.5e-77 292.7 328 51.8
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 7.8e-77 291.6 346 52.0
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 6.6e-76 288.5 341 50.4
Migut.D01626 Erythranthe guttata HOM05D004908 ORTHO05D006418 1.1e-75 287.7 217 65.0
Nn4g23471 Nelumbo nucifera HOM05D004908 ORTHO05D006418 1.5e-75 287.3 232 62.9
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 2.5e-75 286.6 243 60.5
MSTRG.9592 Avicennia marina HOM05D004908 ORTHO05D006418 4.3e-75 285.8 217 65.4
Lj4g0028183 Lotus japonicus HOM05D004908 ORTHO05D006418 5.6e-75 285.4 223 63.2
Aqoxy3G03654 Aquilegia oxysepala HOM05D004908 ORTHO05D006418 7.3e-75 285.0 267 57.3
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 2.1e-74 283.5 341 49.0
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 2.8e-74 283.1 341 49.0
SGA_v2.0_scaffold51G18774 Striga asiatica HOM05D004908 ORTHO05D006418 8.1e-74 281.6 230 63.0
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 3.1e-73 279.6 332 49.7
EL10Ac5g11159 Beta vulgaris HOM05D004908 ORTHO05D006418 1.2e-72 277.7 216 65.3
Manes.14G087101 Manihot esculenta HOM05D004908 ORTHO05D006418 1.2e-72 277.7 345 47.8
CARHR067290 Cardamine hirsuta HOM05D004908 ORTHO05D006418 2.6e-72 276.6 339 49.3
Sopen12g018880 Solanum pennellii HOM05D004908 ORTHO05D006418 2.6e-72 276.6 278 52.5
PSO478G4625 Papaver somniferum HOM05D004908 ORTHO05D006418 1.7e-71 273.9 233 61.4
Duzib205G0531 Durio zibethinus HOM05D004908 ORTHO05D006418 3.8e-71 272.7 232 59.9
AT1G74130 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 1.9e-70 270.4 347 48.7
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 4.8e-66 255.8 261 56.7
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 4.0e-65 252.7 244 56.1
unitig_699.g19027 Utricularia gibba HOM05D004908 ORTHO05D006418 4.0e-65 252.7 196 63.3
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 6.9e-65 251.9 321 49.5
Thhalv10019561m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 6.9e-65 251.9 344 49.1
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.5e-64 250.8 297 46.8
AL2G34040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 2.0e-64 250.4 282 52.1
Carub.0002s2094 Capsella rubella HOM05D004908 ORTHO05D006418 2.0e-64 250.4 351 47.3
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 6.4e-63 245.4 182 67.6
Nitab4.5_0006506g0020 Nicotiana tabacum HOM05D004908 ORTHO05D006418 6.4e-63 245.4 208 61.1
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.4e-62 244.2 342 45.6
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.9e-62 243.8 346 43.6
Os01g0763100 Oryza sativa ssp. japonica HOM05D004908 ORTHO05D006418 3.2e-62 243.0 210 60.0
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 5.5e-62 242.3 316 46.2
SalBow7G1843 Salvia bowleyana HOM05D004908 ORTHO05D006418 6.0e-61 238.8 211 54.0
Nitab4.5_0001797g0080 Nicotiana tabacum HOM05D004908 ORTHO05D006418 5.1e-60 235.7 259 50.2
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.9e-59 233.8 325 45.8
CDE07G0469 Ceratophyllum demersum HOM05D004908 ORTHO05D006418 2.8e-58 229.9 212 53.8
vmacro17622 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 3.7e-58 229.6 211 58.8
PSO017G6704 Papaver somniferum HOM05D004908 ORTHO05D006418 1.8e-57 227.3 204 58.8
BcaC08g46817 Brassica carinata HOM05D004908 ORTHO05D006418 2.4e-57 226.9 369 42.0
PSO017G5063 Papaver somniferum HOM05D004908 ORTHO05D006418 2.4e-57 226.9 204 58.8
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 3.4e-56 223.0 227 49.3
HPP92_019201 Vanilla planifolia HOM05D004908 ORTHO05D006418 4.2e-54 216.1 229 47.6
AT1G74140 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 2.1e-53 213.8 344 43.0
BolC6t39860H Brassica oleracea HOM05D004908 ORTHO05D006418 3.5e-53 213.0 327 42.8
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 4.6e-53 212.6 247 49.8
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 6.0e-53 212.2 335 42.4
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 7.9e-53 211.8 340 43.5
FAN13G1644 Fragaria x ananassa HOM05D004908 ORTHO05D006418 5.1e-52 209.1 202 55.9
Carub.0002s2095 Capsella rubella HOM05D004908 ORTHO05D006418 5.7e-51 205.7 249 47.4
PSO017G2617 Papaver somniferum HOM05D004908 ORTHO05D006418 7.4e-51 205.3 233 49.8
BcaC08g46813 Brassica carinata HOM05D004908 ORTHO05D006418 1.3e-50 204.5 326 41.4
C06p48280 Brassica napus HOM05D004908 ORTHO05D006418 4.8e-50 202.6 293 43.7
ATR0827G189 Amborella trichopoda HOM05D004908 ORTHO05D006418 1.4e-49 201.1 196 54.1
Gohir.D10G255500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 3.1e-49 199.9 132 77.3
RcHm_v2.0_Chr1g0346931 Rosa chinensis HOM05D004908 ORTHO05D006418 2.1e-45 187.2 125 76.8
Zm00001eb370410 Zea mays HOM05D004908 ORTHO05D006418 3.5e-45 186.4 181 55.2
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 1.8e-44 184.1 347 39.2
FvH4_5g13620 Fragaria vesca HOM05D004908 ORTHO05D006418 6.7e-44 182.2 172 56.4
AagrBONN_evm.TU.Sc2ySwM_368.1628 Anthoceros agrestis HOM05D004908 ORTHO05D006418 1.1e-43 181.4 199 49.2
Pp3c22_7870 Physcomitrium patens HOM05D004908 ORTHO05D006418 1.5e-43 181.0 224 44.6
Solyc12g038600.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 3.1e-41 173.3 136 64.7
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 5.3e-41 172.6 340 37.1
SalBow7G4422 Salvia bowleyana HOM05D004908 ORTHO05D006418 5.3e-41 172.6 215 45.1
Psat0s3566g0040 Pisum sativum HOM05D004908 ORTHO05D006418 2.0e-40 170.6 228 44.7
Mapoly0086s0048 Marchantia polymorpha HOM05D004908 ORTHO05D006418 2.6e-40 170.2 205 47.8
Glyma.17G080300 Glycine max HOM05D004908 ORTHO05D006418 2.9e-39 166.8 171 57.9
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 5.0e-39 166.0 326 39.6
SalBow7G0217 Salvia bowleyana HOM05D004908 ORTHO05D006418 7.2e-38 162.2 231 42.4
MCO07G692 Micromonas commoda HOM05D004908 ORTHO05D006418 1.8e-36 157.5 250 37.2
SalBow7G4769 Salvia bowleyana HOM05D004908 ORTHO05D006418 7.4e-35 152.1 241 42.3
SEGI_05482 Sequoiadendron giganteum HOM05D004908 ORTHO05D006418 9.7e-35 151.8 143 58.7
BcaC07g37986 Brassica carinata HOM05D004908 ORTHO05D027361 3.4e-32 143.3 109 71.6
RcHm_v2.0_Chr6g0258631 Rosa chinensis HOM05D004908 ORTHO05D006418 1.3e-31 141.4 122 62.3
Actinidia13428 Actinidia chinensis HOM05D004908 ORTHO05D006418 1.1e-30 138.3 102 69.6
RcHm_v2.0_Chr7g0183341 Rosa chinensis HOM05D004908 ORTHO05D006418 3.6e-29 133.3 117 54.7
Actinidia04812 Actinidia chinensis HOM05D004908 ORTHO05D006418 6.1e-29 132.5 206 41.7
RcHm_v2.0_Chr6g0258651 Rosa chinensis HOM05D004908 ORTHO05D006418 3.3e-27 126.7 76 84.2
vmacro17623 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 2.2e-26 124.0 92 67.4
HPP92_019191 Vanilla planifolia HOM05D004908 ORTHO05D006418 3.7e-26 123.2 123 47.2
Gohir.A06G087200 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.8e-25 120.9 77 74.0
BolC6t39863H Brassica oleracea HOM05D004908 ORTHO05D039080 2.6e-24 117.1 345 32.2
Solyc12g038590.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 1.6e-21 107.8 192 35.9
BcaC02g11039 Brassica carinata HOM05D004908 ORTHO05D027361 1.4e-20 104.8 117 53.0
BolC4t23709H Brassica oleracea HOM05D004908 ORTHO05D027361 1.8e-20 104.4 117 53.0
RcHm_v2.0_Chr1g0346941 Rosa chinensis HOM05D004908 ORTHO05D006418 1.1e-19 101.7 71 66.2
BcaC08g46819 Brassica carinata HOM05D004908 ORTHO05D039080 1.3e-18 98.2 221 33.9
FvH4_5g13610 Fragaria vesca HOM05D004908 ORTHO05D006418 2.2e-18 97.4 73 69.9
CBR_g24070 Chara braunii HOM05D000019 ORTHO05D000002 3.1e-17 93.6 97 41.2
Dinv17434 Davidia involucrata HOM05D004908 ORTHO05D006418 1.6e-16 91.3 86 60.5
BraA07t28215Z Brassica rapa HOM05D004908 ORTHO05D027361 8.5e-15 85.5 69 68.1
Gohir.A07G149500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 7.0e-09 65.9 43 67.4
BolC6t39861H Brassica oleracea HOM05D004908 ORTHO05D006418 5.5e-06 56.2 135 36.3


User provided reference genes

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