Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g15860 Schrenkiella parvula HOM05D009038 ORTHO05D010897 1.6e-183 646.0 325 100.0
AL1G30140 Arabidopsis lyrata HOM05D009038 ORTHO05D010897 8.9e-94 347.8 328 61.6
CARHR018390 Cardamine hirsuta HOM05D009038 ORTHO05D010897 6.2e-87 325.1 335 58.8
C08p18180 Brassica napus HOM05D009038 ORTHO05D010897 1.5e-85 320.5 326 58.9
BolC8t49453H Brassica oleracea HOM05D009038 ORTHO05D010897 1.5e-85 320.5 326 58.9
Carub.0001s1751 Capsella rubella HOM05D009038 ORTHO05D010897 3.4e-85 319.3 325 57.5
BcaC07g38888 Brassica carinata HOM05D009038 ORTHO05D010897 9.8e-85 317.8 326 58.6
A08p30740 Brassica napus HOM05D009038 ORTHO05D010897 1.3e-84 317.4 327 58.7
AT1G17780 Arabidopsis thaliana HOM05D009038 ORTHO05D010897 2.2e-84 316.6 325 56.9
BraA08t35004Z Brassica rapa HOM05D009038 ORTHO05D010897 2.2e-84 316.6 327 59.0
AT2G16575 Arabidopsis thaliana HOM05D009038 ORTHO05D010897 1.6e-58 230.7 224 58.5
Sp5g28090 Schrenkiella parvula HOM05D009038 ORTHO05D010897 9.9e-53 211.5 375 41.1
Thhalv10018751m.g Eutrema salsugineum HOM05D009038 ORTHO05D010897 3.7e-47 193.0 372 40.3
Aa31LG7G2600 Aethionema arabicum HOM05D009038 ORTHO05D010897 2.3e-41 173.7 402 37.6
THA.LOC104812203 Tarenaya hassleriana HOM05D009038 ORTHO05D010897 3.4e-37 159.8 352 35.8
C02p30590 Brassica napus HOM05D009038 ORTHO05D010897 2.9e-36 156.8 331 39.6
BolC2t09109H Brassica oleracea HOM05D009038 ORTHO05D010897 3.8e-36 156.4 331 39.6
A02p18460 Brassica napus HOM05D009038 ORTHO05D010897 1.4e-35 154.5 322 40.1
BraA02t06885Z Brassica rapa HOM05D009038 ORTHO05D010897 1.4e-35 154.5 322 40.1
THA.LOC104823260 Tarenaya hassleriana HOM05D009038 ORTHO05D010897 3.9e-33 146.4 299 38.5
Aa31LG4G3400 Aethionema arabicum HOM05D009038 ORTHO05D010897 1.1e-32 144.8 353 34.0
Carub.0008s0659 Capsella rubella HOM05D009038 ORTHO05D010897 1.3e-31 141.4 102 73.5
BraA06t24527Z Brassica rapa HOM05D009038 ORTHO05D010897 1.1e-30 138.3 93 76.3
A06p13850 Brassica napus HOM05D009038 ORTHO05D010897 1.8e-30 137.5 93 75.3
A06p13660 Brassica napus HOM05D009038 ORTHO05D010897 9.1e-30 135.2 93 74.2
A06p13800 Brassica napus HOM05D009038 ORTHO05D010897 9.1e-30 135.2 93 74.2
BraA06t24517Z Brassica rapa HOM05D009038 ORTHO05D010897 2.2e-28 130.6 97 70.1
BraA06t24522Z Brassica rapa HOM05D009038 ORTHO05D010897 3.8e-28 129.8 103 67.0
A06p13710 Brassica napus HOM05D009038 ORTHO05D010897 6.5e-28 129.0 98 70.4
CARHR066100 Cardamine hirsuta HOM05D009038 ORTHO05D010897 4.2e-27 126.3 502 27.7
BraA06t24525Z Brassica rapa HOM05D009038 ORTHO05D010897 2.6e-24 117.1 131 51.9
AL2G32880 Arabidopsis lyrata HOM05D009038 ORTHO05D010897 5.7e-24 115.9 202 39.6
BcaB07g33996 Brassica carinata HOM05D009038 ORTHO05D010897 7.4e-24 115.5 68 85.3
BcaB07g34003 Brassica carinata HOM05D009038 ORTHO05D010897 1.3e-23 114.8 63 87.3
Carub.0002s1990 Capsella rubella HOM05D009038 ORTHO05D010897 2.2e-23 114.0 218 38.1
BcaB07g34000 Brassica carinata HOM05D009038 ORTHO05D010897 2.0e-21 107.5 64 84.4
AT1G73130 Arabidopsis thaliana HOM05D009038 ORTHO05D010897 1.3e-20 104.8 203 37.9
CsaV3_4G033230 Cucumis sativus L. HOM05D008023 ORTHO05D010897 2.6e-16 90.5 219 33.3
BcaC05g25695 Brassica carinata HOM05D000268 ORTHO05D000261 3.3e-16 90.1 114 48.2
Cpa.g.sc131.62 Carica papaya HOM05D008023 ORTHO05D002944 2.2e-15 87.4 133 42.9
GSVIVG01014227001 Vitis vinifera HOM05D008023 ORTHO05D002944 4.5e-13 79.7 109 47.7
Manes.03G103000 Manihot esculenta HOM05D008023 ORTHO05D002944 7.7e-13 79.0 142 38.0
MELO3C025631.2 Cucumis melo HOM05D008023 ORTHO05D002944 1.7e-12 77.8 226 31.0
QL08p026875 Quercus lobata HOM05D008023 ORTHO05D002944 2.2e-12 77.4 113 40.7
Prupe.4G170200 Prunus persica HOM05D008023 ORTHO05D002944 2.9e-12 77.0 111 44.1
Ciclev10008068m.g Citrus clementina HOM05D008023 ORTHO05D002944 5.0e-12 76.3 116 45.7
MD11G1259700 Malus domestica HOM05D008023 ORTHO05D002944 5.0e-12 76.3 125 39.2
Cfa019590 Carpinus fangiana HOM05D008023 ORTHO05D002944 6.5e-12 75.9 133 40.6
Thecc.07G105200 Theobroma cacao HOM05D008023 ORTHO05D002944 6.5e-12 75.9 116 45.7
Duzib213G0674 Durio zibethinus HOM05D008023 ORTHO05D002944 1.9e-11 74.3 135 40.7
Medtr8g463800 Medicago truncatula HOM05D008023 ORTHO05D002944 5.5e-11 72.8 106 47.2
Atru.chr2.2242 Acer truncatum HOM05D008023 ORTHO05D002944 7.2e-11 72.4 132 35.6
ClCG11G017550 Citrullus lanatus HOM05D008023 ORTHO05D002944 7.2e-11 72.4 220 29.5
Potri.001G376800 Populus trichocarpa HOM05D008023 ORTHO05D002944 7.2e-11 72.4 118 41.5
Manes.15G092100 Manihot esculenta HOM05D008023 ORTHO05D002944 1.6e-10 71.2 192 31.2
TPR.G12029 Trifolium pratense HOM05D008023 ORTHO05D002944 2.7e-10 70.5 106 45.3
Gorai.009G372300 Gossypium raimondii HOM05D008023 ORTHO05D002944 3.6e-10 70.1 191 34.0
Gohir.D05G344300 Gossypium hirsutum HOM05D008023 ORTHO05D002944 6.1e-10 69.3 191 34.0
Gohir.D11G306100 Gossypium hirsutum HOM05D008023 ORTHO05D002944 6.1e-10 69.3 130 40.0
RcHm_v2.0_Chr5g0031461 Rosa chinensis HOM05D008023 ORTHO05D002944 6.1e-10 69.3 104 40.4
MD03G1240400 Malus domestica HOM05D008023 ORTHO05D002944 8.0e-10 68.9 135 35.6
Dinv14970 Davidia involucrata HOM05D008023 ORTHO05D002944 1.4e-09 68.2 111 41.4
FAN25G1709 Fragaria x ananassa HOM05D008023 ORTHO05D002944 2.3e-09 67.4 104 40.4
Duzib170G0431 Durio zibethinus HOM05D008023 ORTHO05D002944 3.0e-09 67.0 195 32.3
FAN16G2995 Fragaria x ananassa HOM05D008023 ORTHO05D002944 4.0e-09 66.6 105 41.9
TWI39G0037 Tripterygium wilfordii HOM05D008023 ORTHO05D002944 4.0e-09 66.6 213 30.0
Cc05_g11360 Coffea canephora HOM05D008023 ORTHO05D002944 5.2e-09 66.2 256 31.6
FAN21G3564 Fragaria x ananassa HOM05D008023 ORTHO05D002944 5.2e-09 66.2 112 38.4
CANSAT35G0556 Cannabis sativa HOM05D008023 ORTHO05D010897 6.7e-09 65.9 111 42.3
FvH4_3g18640 Fragaria vesca HOM05D008023 ORTHO05D002944 6.7e-09 65.9 104 39.4
FAN11G0626 Fragaria x ananassa HOM05D008023 ORTHO05D002944 6.7e-09 65.9 104 39.4
Gohir.A04G038800 Gossypium hirsutum HOM05D008023 ORTHO05D002944 6.7e-09 65.9 191 33.0
Lj8C151T6 Lonicera japonica HOM05D008023 ORTHO05D010897 8.8e-09 65.5 144 38.2
Phvul.011G159200 Phaseolus vulgaris HOM05D008023 ORTHO05D002944 8.8e-09 65.5 77 49.4
Psat4g175400 Pisum sativum HOM05D008023 ORTHO05D002944 1.2e-08 65.1 208 29.8
VMungo1127G0722 Vigna mungo HOM05D008023 ORTHO05D002944 4.4e-08 63.2 311 26.4
Lj1A833T49 Lonicera japonica HOM05D008023 ORTHO05D002944 5.7e-08 62.8 108 39.8
Sabra16G0248200 Salix brachista HOM05D008023 ORTHO05D002944 9.7e-08 62.0 135 36.3
Gohir.A11G287000 Gossypium hirsutum HOM05D008023 ORTHO05D002944 1.3e-07 61.6 113 40.7
Ca_23071_v3 Cicer arietinum L. HOM05D008023 ORTHO05D002944 2.2e-07 60.8 85 41.2
Glyma.06G231200 Glycine max HOM05D008023 ORTHO05D002944 2.2e-07 60.8 230 28.3
Lalb_Chr19g0133891 Lupinus albus HOM05D008023 ORTHO05D002944 2.2e-07 60.8 131 37.4
Eucgr.L01514 Eucalyptus grandis HOM05D008023 ORTHO05D010897 2.8e-07 60.5 91 39.6
FvH4_3g25880 Fragaria vesca HOM05D008023 ORTHO05D010897 4.8e-07 59.7 67 46.3
Eucgr.F01214 Eucalyptus grandis HOM05D008023 ORTHO05D010897 1.8e-06 57.8 235 26.0
Cc01_g02410 Coffea canephora HOM05D008023 ORTHO05D002944 2.4e-06 57.4 316 27.8
CiPaw.12G114700 Carya illinoinensis HOM05D008023 ORTHO05D002944 4.1e-06 56.6 224 28.6
Lj3g0002978 Lotus japonicus HOM05D008023 ORTHO05D002944 5.3e-06 56.2 249 29.3
PGR083G0067 Punica granatum HOM05D008023 ORTHO05D010897 9.1e-06 55.5 117 40.2


User provided reference genes

Program Settings