Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g15700 Schrenkiella parvula HOM05D003959 ORTHO05D001488 3.0e-64 248.4 134 100.0
AL1G29870 Arabidopsis lyrata HOM05D003959 ORTHO05D001488 4.0e-16 88.6 93 58.1
Thhalv10008890m.g Eutrema salsugineum HOM05D003959 ORTHO05D001488 2.6e-15 85.9 93 57.0
CARHR018170 Cardamine hirsuta HOM05D003959 ORTHO05D001488 5.4e-13 78.2 93 54.8
A04p20210 Brassica napus HOM05D003959 ORTHO05D001488 7.8e-12 74.3 151 39.7
BraA04t17600Z Brassica rapa HOM05D003959 ORTHO05D001488 7.8e-12 74.3 151 39.7
AL8G12320 Arabidopsis lyrata HOM05D003959 ORTHO05D001488 2.3e-11 72.8 89 50.6
AT5G46160 Arabidopsis thaliana HOM05D003959 ORTHO05D001488 2.3e-11 72.8 89 50.6
Carub.0008s0176 Capsella rubella HOM05D003959 ORTHO05D001488 2.3e-11 72.8 89 50.6
CARHR175640 Cardamine hirsuta HOM05D003959 ORTHO05D001488 2.3e-11 72.8 89 50.6
BcaC02g08310 Brassica carinata HOM05D003959 ORTHO05D001488 3.0e-11 72.4 150 39.3
C04p55920 Brassica napus HOM05D003959 ORTHO05D001488 3.0e-11 72.4 150 39.3
BolC4t27125H Brassica oleracea HOM05D003959 ORTHO05D001488 3.0e-11 72.4 150 39.3
BcaB07g30850 Brassica carinata HOM05D003959 ORTHO05D001488 3.9e-11 72.0 89 50.6
BcaC04g21721 Brassica carinata HOM05D003959 ORTHO05D001488 3.9e-11 72.0 89 50.6
A06p46130 Brassica napus HOM05D003959 ORTHO05D001488 3.9e-11 72.0 89 50.6
A09p22150 Brassica napus HOM05D003959 ORTHO05D001488 3.9e-11 72.0 89 50.6
C07p29360 Brassica napus HOM05D003959 ORTHO05D001488 3.9e-11 72.0 89 50.6
C09p28310 Brassica napus HOM05D003959 ORTHO05D001488 3.9e-11 72.0 89 50.6
BolC7t43476H Brassica oleracea HOM05D003959 ORTHO05D001488 3.9e-11 72.0 89 50.6
BolC9t55706H Brassica oleracea HOM05D003959 ORTHO05D001488 3.9e-11 72.0 89 50.6
BraA06t27478Z Brassica rapa HOM05D003959 ORTHO05D001488 3.9e-11 72.0 89 50.6
BraA09t37819Z Brassica rapa HOM05D003959 ORTHO05D001488 3.9e-11 72.0 89 50.6
Sp2g11020 Schrenkiella parvula HOM05D003959 ORTHO05D001488 3.9e-11 72.0 89 50.6
Thhalv10001156m.g Eutrema salsugineum HOM05D003959 ORTHO05D001488 6.6e-11 71.2 89 50.6
AT1G17560 Arabidopsis thaliana HOM05D003959 ORTHO05D001488 1.5e-10 70.1 98 46.9
BcaC04g21723 Brassica carinata HOM05D003959 ORTHO05D001488 1.9e-10 69.7 89 49.4
C09p28280 Brassica napus HOM05D003959 ORTHO05D001488 1.9e-10 69.7 89 49.4
Carub.0001s1733 Capsella rubella HOM05D003959 ORTHO05D001488 5.6e-10 68.2 86 52.3
BcaB06g29609 Brassica carinata HOM05D003959 ORTHO05D001488 1.6e-09 66.6 104 44.2
A06p13490 Brassica napus HOM05D003959 ORTHO05D001488 3.6e-09 65.5 116 40.5
BraA06t24501Z Brassica rapa HOM05D003959 ORTHO05D001488 3.6e-09 65.5 116 40.5
TWI36G1148 Tripterygium wilfordii HOM05D003959 ORTHO05D001488 3.6e-09 65.5 80 51.2
TWI75G0958 Tripterygium wilfordii HOM05D003959 ORTHO05D001488 3.6e-09 65.5 80 51.2
Aa31LG9G6750 Aethionema arabicum HOM05D003959 ORTHO05D001488 4.7e-09 65.1 81 50.6
BcaC05g25681 Brassica carinata HOM05D003959 ORTHO05D001488 4.7e-09 65.1 130 37.7
C05p15990 Brassica napus HOM05D003959 ORTHO05D001488 4.7e-09 65.1 130 37.7
BolC5t30301H Brassica oleracea HOM05D003959 ORTHO05D001488 4.7e-09 65.1 130 37.7
Lj1g0018458 Lotus japonicus HOM05D003959 ORTHO05D001488 1.1e-08 63.9 80 52.5
THA.LOC104806134 Tarenaya hassleriana HOM05D003959 ORTHO05D001488 1.1e-08 63.9 80 50.0
CANSAT78G0994 Cannabis sativa HOM05D003959 ORTHO05D001488 1.4e-08 63.5 80 51.2
Lj6g0000074 Lotus japonicus HOM05D003959 ORTHO05D001488 1.4e-08 63.5 80 52.5
Atru.chr10.1163 Acer truncatum HOM05D003959 ORTHO05D001488 1.8e-08 63.2 80 50.0
Atru.chr6.2792 Acer truncatum HOM05D003959 ORTHO05D001488 1.8e-08 63.2 80 50.0
Cpa.g.sc318.3 Carica papaya HOM05D003959 ORTHO05D001488 1.8e-08 63.2 80 50.0
COL.COLO4_27612 Corchorus olitorius HOM05D003959 ORTHO05D001488 1.8e-08 63.2 80 50.0
COL.COLO4_31035 Corchorus olitorius HOM05D003959 ORTHO05D001488 1.8e-08 63.2 80 50.0
Duzib160G0826 Durio zibethinus HOM05D003959 ORTHO05D001488 1.8e-08 63.2 80 50.0
Gohir.A05G147200 Gossypium hirsutum HOM05D003959 ORTHO05D001488 1.8e-08 63.2 80 50.0
Gohir.A10G042520 Gossypium hirsutum HOM05D003959 ORTHO05D001488 1.8e-08 63.2 80 50.0
Gohir.D05G149700 Gossypium hirsutum HOM05D003959 ORTHO05D001488 1.8e-08 63.2 80 50.0
Gohir.D10G043500 Gossypium hirsutum HOM05D003959 ORTHO05D001488 1.8e-08 63.2 80 50.0
Gorai.009G153800 Gossypium raimondii HOM05D003959 ORTHO05D001488 1.8e-08 63.2 80 50.0
Gorai.011G046200 Gossypium raimondii HOM05D003959 ORTHO05D001488 1.8e-08 63.2 80 50.0
Manes.06G164300 Manihot esculenta HOM05D003959 ORTHO05D001488 1.8e-08 63.2 80 50.0
Manes.17G072900 Manihot esculenta HOM05D003959 ORTHO05D001488 1.8e-08 63.2 80 50.0
Thecc.02G307600 Theobroma cacao HOM05D003959 ORTHO05D001488 1.8e-08 63.2 80 50.0
Thecc.06G147200 Theobroma cacao HOM05D003959 ORTHO05D001488 1.8e-08 63.2 80 50.0
Ca_02566_v3 Cicer arietinum L. HOM05D003959 ORTHO05D001488 2.4e-08 62.8 80 51.2
MELO3C007120.2 Cucumis melo HOM05D003959 ORTHO05D001488 2.4e-08 62.8 80 51.2
MELO3C008092.2 Cucumis melo HOM05D003959 ORTHO05D001488 2.4e-08 62.8 80 51.2
CsaV3_6G051890 Cucumis sativus L. HOM05D003959 ORTHO05D001488 2.4e-08 62.8 80 51.2
Glyma.08G310400 Glycine max HOM05D003959 ORTHO05D001488 2.4e-08 62.8 80 51.2
Glyma.18G105500 Glycine max HOM05D003959 ORTHO05D001488 2.4e-08 62.8 80 51.2
Lalb_Chr02g0149491 Lupinus albus HOM05D003959 ORTHO05D001488 2.4e-08 62.8 80 51.2
Lalb_Chr17g0348321 Lupinus albus HOM05D003959 ORTHO05D001488 2.4e-08 62.8 80 51.2
Aqoxy5G00859 Aquilegia oxysepala HOM05D003959 ORTHO05D001488 4.0e-08 62.0 80 50.0
Ca_14614_v3 Cicer arietinum L. HOM05D003959 ORTHO05D001488 4.0e-08 62.0 80 51.2
Ca_20413_v3 Cicer arietinum L. HOM05D003959 ORTHO05D001488 4.0e-08 62.0 80 51.2
MBI19_g34081_MAGBIO Magnolia biondii HOM05D003959 ORTHO05D001488 4.0e-08 62.0 80 50.0
Nn8g40928 Nelumbo nucifera HOM05D003959 ORTHO05D001488 4.0e-08 62.0 80 50.0
TAR460G0004 Trochodendron aralioides HOM05D003959 ORTHO05D001488 4.0e-08 62.0 80 50.0
TAR627G0457 Trochodendron aralioides HOM05D003959 ORTHO05D001488 4.0e-08 62.0 80 50.0
TAR627G1037 Trochodendron aralioides HOM05D003959 ORTHO05D001488 4.0e-08 62.0 80 50.0
Cfa000921 Carpinus fangiana HOM05D003959 ORTHO05D001488 5.2e-08 61.6 80 50.0
Cfa007957 Carpinus fangiana HOM05D003959 ORTHO05D001488 5.2e-08 61.6 80 50.0
CiPaw.01G168000 Carya illinoinensis HOM05D003959 ORTHO05D001488 5.2e-08 61.6 80 50.0
CiPaw.02G098600 Carya illinoinensis HOM05D003959 ORTHO05D001488 5.2e-08 61.6 80 50.0
ClCG01G024770 Citrullus lanatus HOM05D003959 ORTHO05D001488 5.2e-08 61.6 80 50.0
ClCG09G005460 Citrullus lanatus HOM05D003959 ORTHO05D001488 5.2e-08 61.6 80 50.0
Haze_05634 Corylus avellana HOM05D003959 ORTHO05D001488 5.2e-08 61.6 80 50.0
Lsat_1_v5_gn_8_26321 Lactuca sativa HOM05D003959 ORTHO05D001488 5.2e-08 61.6 80 51.2
Lsat_1_v5_gn_8_55401 Lactuca sativa HOM05D003959 ORTHO05D001488 5.2e-08 61.6 80 51.2
MBI19_g14526_MAGBIO Magnolia biondii HOM05D003959 ORTHO05D001488 5.2e-08 61.6 80 48.8
Phvul.006G034600 Phaseolus vulgaris HOM05D003959 ORTHO05D001488 5.2e-08 61.6 81 50.6
QL06p001969 Quercus lobata HOM05D003959 ORTHO05D001488 5.2e-08 61.6 80 50.0
Zm00001eb134780 Zea mays HOM05D003959 ORTHO05D001488 5.2e-08 61.6 83 49.4
Dinv21544 Davidia involucrata HOM05D003959 ORTHO05D001488 6.8e-08 61.2 80 50.0
HanXRQChr06g0183951 Helianthus annuus HOM05D003959 ORTHO05D001488 6.8e-08 61.2 80 51.2
HanXRQChr14g0428081 Helianthus annuus HOM05D003959 ORTHO05D001488 6.8e-08 61.2 80 51.2
Lj7C343T5 Lonicera japonica HOM05D003959 ORTHO05D001488 6.8e-08 61.2 80 50.0
MD05G1061000 Malus domestica HOM05D003959 ORTHO05D001488 6.8e-08 61.2 81 49.4
MD10G1068800 Malus domestica HOM05D003959 ORTHO05D001488 6.8e-08 61.2 81 49.4
FvH4_2g09650 Fragaria vesca HOM05D003959 ORTHO05D001488 8.9e-08 60.8 81 49.4
FAN15G1930 Fragaria x ananassa HOM05D000394 ORTHO05D000299 8.9e-08 60.8 81 49.4
FAN15G2904 Fragaria x ananassa HOM05D003959 ORTHO05D001488 8.9e-08 60.8 81 49.4
FAN24G0220 Fragaria x ananassa HOM05D003959 ORTHO05D001488 8.9e-08 60.8 81 49.4
Prupe.1G558000 Prunus persica HOM05D003959 ORTHO05D001488 8.9e-08 60.8 81 49.4
RcHm_v2.0_Chr1g0329391 Rosa chinensis HOM05D003959 ORTHO05D001488 8.9e-08 60.8 81 49.4
PSO170G0011 Papaver somniferum HOM05D003959 ORTHO05D001488 1.2e-07 60.5 81 50.6
HPP92_006051 Vanilla planifolia HOM05D003959 ORTHO05D001488 1.2e-07 60.5 80 50.0
VMungo0540G0008 Vigna mungo HOM05D003959 ORTHO05D001488 1.2e-07 60.5 80 50.0
GSVIVG01021529001 Vitis vinifera HOM05D003959 ORTHO05D001488 1.2e-07 60.5 78 50.0
arahy.Tifrunner.gnm1.ann1.9F1UYE Arachis hypogaea HOM05D003959 ORTHO05D001488 1.5e-07 60.1 80 48.8
arahy.Tifrunner.gnm1.ann1.Y6E9TB Arachis hypogaea HOM05D003959 ORTHO05D001488 1.5e-07 60.1 80 48.8
Cc03_g11360 Coffea canephora HOM05D003959 ORTHO05D001488 1.5e-07 60.1 80 50.0
CsaV3_2G033220 Cucumis sativus L. HOM05D003959 ORTHO05D001488 1.5e-07 60.1 80 50.0
ECA238G0620 Erigeron canadensis HOM05D003959 ORTHO05D001488 1.5e-07 60.1 80 50.0
MBI02_g21427_MAGBIO Magnolia biondii HOM05D003959 ORTHO05D001488 1.5e-07 60.1 80 48.8
Os12g0616200 Oryza sativa ssp. japonica HOM05D003959 ORTHO05D001488 2.0e-07 59.7 83 47.0
QL05p055692 Quercus lobata HOM05D003959 ORTHO05D001488 2.6e-07 59.3 80 48.8
Dinv44648 Davidia involucrata HOM05D003959 ORTHO05D001488 7.6e-07 57.8 80 48.8
Zm00001eb189880 Zea mays HOM05D003959 ORTHO05D001488 7.6e-07 57.8 83 48.2
Zm00001eb276960 Zea mays HOM05D003959 ORTHO05D001488 7.6e-07 57.8 83 48.2
Medtr5g007240 Medicago truncatula HOM05D003959 ORTHO05D001488 9.9e-07 57.4 80 47.5
Medtr5g096490 Medicago truncatula HOM05D003959 ORTHO05D001488 9.9e-07 57.4 80 47.5
CSS0003471 Camellia sinensis var. sinensis HOM05D003959 ORTHO05D001488 1.3e-06 57.0 80 47.5
CSS0022821 Camellia sinensis var. sinensis HOM05D003959 ORTHO05D001488 1.3e-06 57.0 80 47.5
CSS0027065 Camellia sinensis var. sinensis HOM05D003959 ORTHO05D001488 1.3e-06 57.0 80 47.5
CSS0046336 Camellia sinensis var. sinensis HOM05D003959 ORTHO05D001488 1.3e-06 57.0 80 47.5
Hma1.2p1_0594F.1_g185820 Hydrangea macrophylla HOM05D003959 ORTHO05D001488 1.3e-06 57.0 80 47.5
MSTRG.16258 Avicennia marina HOM05D003959 ORTHO05D001488 1.7e-06 56.6 80 47.5
PGSC0003DMG400005217 Solanum tuberosum HOM05D003959 ORTHO05D001488 1.7e-06 56.6 80 47.5
ATR1098G090 Amborella trichopoda HOM05D003959 ORTHO05D001488 2.2e-06 56.2 80 47.5
Peaxi162Scf00397g00428 Petunia axillaris HOM05D003959 ORTHO05D001488 2.2e-06 56.2 80 47.5
Peaxi162Scf00875g00226 Petunia axillaris HOM05D003959 ORTHO05D001488 2.2e-06 56.2 80 47.5
TPR.G37990 Trifolium pratense HOM05D003959 ORTHO05D001488 2.9e-06 55.8 80 46.2
CAN.G78.20 Capsicum annuum HOM05D003959 ORTHO05D001488 3.8e-06 55.5 80 46.2
Ciclev10016904m.g Citrus clementina HOM05D003959 ORTHO05D001488 3.8e-06 55.5 80 47.5
Psat4g176520 Pisum sativum HOM05D003959 ORTHO05D001488 3.8e-06 55.5 80 46.2
Psat5g207880 Pisum sativum HOM05D003959 ORTHO05D001488 3.8e-06 55.5 80 46.2
Solyc03g119380.3 Solanum lycopersicum HOM05D003959 ORTHO05D001488 3.8e-06 55.5 80 46.2
Sopen03g038250 Solanum pennellii HOM05D003959 ORTHO05D001488 3.8e-06 55.5 80 46.2
PGSC0003DMG401005640 Solanum tuberosum HOM05D003959 ORTHO05D001488 3.8e-06 55.5 80 46.2
PGSC0003DMG403005640 Solanum tuberosum HOM05D003959 ORTHO05D001488 3.8e-06 55.5 80 46.2
Nitab4.5_0001251g0060 Nicotiana tabacum HOM05D000402 ORTHO05D001488 4.9e-06 55.1 80 46.2
Nitab4.5_0006013g0050 Nicotiana tabacum HOM05D003959 ORTHO05D001488 4.9e-06 55.1 80 46.2
QL05p055594 Quercus lobata HOM05D003959 ORTHO05D001488 4.9e-06 55.1 80 46.2


User provided reference genes

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