Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g15050 Schrenkiella parvula HOM05D008148 ORTHO05D010295 7.7e-32 139.8 68 100.0
Thhalv10009282m.g Eutrema salsugineum HOM05D008148 ORTHO05D010295 5.7e-27 123.6 68 86.8
BcaC07g41389 Brassica carinata HOM05D008148 ORTHO05D010295 8.2e-26 119.8 68 83.8
CARHR017420 Cardamine hirsuta HOM05D008148 ORTHO05D010295 1.8e-25 118.6 68 82.4
A09p60700 Brassica napus HOM05D008148 ORTHO05D010295 4.1e-25 117.5 69 84.1
BraA09t41440Z Brassica rapa HOM05D008148 ORTHO05D010295 2.0e-24 115.2 69 82.6
C08p44200 Brassica napus HOM05D008148 ORTHO05D010295 3.5e-24 114.4 69 81.2
AL1G29090 Arabidopsis lyrata HOM05D008148 ORTHO05D010295 5.9e-24 113.6 70 81.4
Carub.0001s1665 Capsella rubella HOM05D008148 ORTHO05D010295 1.7e-23 112.1 69 76.8
AT1G16916 Arabidopsis thaliana HOM05D008148 ORTHO05D010295 2.5e-22 108.2 69 81.2
THA.LOC104812318 Tarenaya hassleriana HOM05D008148 ORTHO05D010295 4.7e-21 104.0 68 72.1
Sabra11G0096700 Salix brachista HOM05D008148 ORTHO05D010295 7.7e-16 86.7 64 59.4
Potri.011G109100 Populus trichocarpa HOM05D008148 ORTHO05D010295 8.5e-15 83.2 64 57.8
MELO3C025654.2 Cucumis melo HOM05D008148 ORTHO05D010295 8.8e-12 73.2 67 53.7
TPR.G16053 Trifolium pratense HOM05D008148 ORTHO05D010295 1.5e-11 72.4 67 47.8
CiPaw.11G159800 Carya illinoinensis HOM05D008148 ORTHO05D010295 2.6e-11 71.6 62 51.6
Prupe.4G163600 Prunus persica HOM05D008148 ORTHO05D010295 2.6e-11 71.6 43 67.4
CsaV3_4G032950 Cucumis sativus L. HOM05D008148 ORTHO05D010295 3.4e-11 71.2 67 53.7
MD11G1264400 Malus domestica HOM05D008148 ORTHO05D010295 3.4e-11 71.2 44 65.9
Atru.chr2.2119 Acer truncatum HOM05D008148 ORTHO05D010295 7.5e-11 70.1 64 53.1
Ca_03959_v3 Cicer arietinum L. HOM05D008148 ORTHO05D010295 7.5e-11 70.1 64 50.0
RcHm_v2.0_Chr5g0030781 Rosa chinensis HOM05D008148 ORTHO05D010295 7.5e-11 70.1 44 61.4
Prupe.4G164100 Prunus persica HOM05D008148 ORTHO05D010295 9.8e-11 69.7 40 67.5
Actinidia12583 Actinidia chinensis HOM05D008148 ORTHO05D010295 2.8e-10 68.2 64 50.0
ClCG11G017320 Citrullus lanatus HOM05D008148 ORTHO05D010295 4.8e-10 67.4 64 51.6
Psat5g237240 Pisum sativum HOM05D008148 ORTHO05D010295 6.3e-10 67.0 66 48.5
Cpa.g.sc77.20 Carica papaya HOM05D008148 ORTHO05D010295 8.3e-10 66.6 65 53.8
Manes.15G095500 Manihot esculenta HOM05D008148 ORTHO05D010295 8.3e-10 66.6 60 50.0
Lalb_Chr25g0285821 Lupinus albus HOM05D008148 ORTHO05D010295 1.1e-09 66.2 58 53.4
FAN11G2091 Fragaria x ananassa HOM05D008148 ORTHO05D010295 1.8e-09 65.5 44 56.8
Duzib213G0597 Durio zibethinus HOM05D008148 ORTHO05D010295 3.1e-09 64.7 44 63.6
PGR031G2401 Punica granatum HOM05D008148 ORTHO05D010295 4.1e-09 64.3 43 58.1
FAN21G2680 Fragaria x ananassa HOM05D008148 ORTHO05D010295 5.4e-09 63.9 44 56.8
CSS0001630 Camellia sinensis var. sinensis HOM05D008148 ORTHO05D010295 7.0e-09 63.5 47 53.2
Medtr2g076020 Medicago truncatula HOM05D008148 ORTHO05D010295 1.6e-08 62.4 66 45.5
Sed0019666 Sechium edule HOM05D008148 ORTHO05D010295 2.0e-08 62.0 43 55.8
Eucgr.F03276 Eucalyptus grandis HOM05D008148 ORTHO05D010295 2.7e-08 61.6 39 61.5
Thecc.07G117800 Theobroma cacao HOM05D008148 ORTHO05D010295 2.7e-08 61.6 44 56.8
DCAR_013159 Daucus carota HOM05D008148 ORTHO05D010295 3.5e-08 61.2 36 69.4
GSVIVG01014187001 Vitis vinifera HOM05D008148 ORTHO05D010295 3.5e-08 61.2 45 60.0
Oeu059259.1 Olea europaea HOM05D008148 ORTHO05D010295 4.5e-08 60.8 60 51.7
Gohir.A01G053800 Gossypium hirsutum HOM05D008148 ORTHO05D010295 7.7e-08 60.1 44 59.1
Gohir.D01G042712 Gossypium hirsutum HOM05D008148 ORTHO05D010295 7.7e-08 60.1 44 59.1
Gorai.002G054100 Gossypium raimondii HOM05D008148 ORTHO05D010295 7.7e-08 60.1 44 59.1
arahy.Tifrunner.gnm1.ann1.GBF3HF Arachis hypogaea HOM05D008148 ORTHO05D010295 1.7e-07 58.9 68 44.1
Phvul.005G081700 Phaseolus vulgaris HOM05D008148 ORTHO05D010295 1.7e-07 58.9 37 56.8
Glyma.13G269300 Glycine max HOM05D008148 ORTHO05D010295 2.3e-07 58.5 64 46.9
arahy.Tifrunner.gnm1.ann1.MJJR0W Arachis hypogaea HOM05D008148 ORTHO05D010295 3.8e-07 57.8 41 53.7
Glyma.12G230300 Glycine max HOM05D008148 ORTHO05D010295 3.8e-07 57.8 56 48.2
SHI27618 Sapria himalayana HOM05D008148 ORTHO05D010295 6.6e-07 57.0 42 57.1
Cc05_g11020 Coffea canephora HOM05D008148 ORTHO05D010295 8.6e-07 56.6 62 45.2
COL.COLO4_17536 Corchorus olitorius HOM05D008148 ORTHO05D010295 8.6e-07 56.6 44 54.5
Migut.M00719 Erythranthe guttata HOM05D008148 ORTHO05D010295 8.6e-07 56.6 38 52.6
FAN25G0037 Fragaria x ananassa HOM05D008148 ORTHO05D010295 8.6e-07 56.6 47 51.1
SalBow6G6640 Salvia bowleyana HOM05D008148 ORTHO05D010295 8.6e-07 56.6 62 46.8
SalBow7G3203 Salvia bowleyana HOM05D008148 ORTHO05D010295 1.5e-06 55.8 62 46.8
Sc03g0010550 Simmondsia chinensis HOM05D008148 ORTHO05D010295 2.5e-06 55.1 61 42.6
Lj3g0020996 Lotus japonicus HOM05D008148 ORTHO05D010295 4.2e-06 54.3 40 52.5
Atru.chr1.2298 Acer truncatum HOM05D008148 ORTHO05D010295 5.5e-06 53.9 43 58.1
SGA_v2.0_scaffold34G13787 Striga asiatica HOM05D008148 ORTHO05D010295 7.2e-06 53.5 39 59.0


User provided reference genes

Program Settings