Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 6.1e-244 847.0 428 100.0
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 2.5e-221 771.9 441 90.7
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 1.0e-214 750.0 441 88.7
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 3.8e-209 731.5 444 87.2
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 2.7e-207 725.3 444 85.4
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 1.1e-205 719.9 442 85.7
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 5.3e-187 657.9 447 78.1
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 3.8e-185 651.7 450 78.2
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 2.8e-180 635.6 440 76.1
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 1.1e-179 633.6 452 75.4
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 1.1e-179 633.6 452 75.4
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 1.4e-179 633.3 448 74.8
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 1.4e-179 633.3 452 75.2
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 3.1e-179 632.1 450 74.7
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 6.9e-179 630.9 448 74.8
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 9.0e-179 630.6 447 74.7
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 1.5e-178 629.8 449 74.8
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 3.4e-178 628.6 452 75.2
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 5.9e-178 627.9 452 75.2
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 1.0e-177 627.1 452 75.2
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 2.2e-177 625.9 453 75.1
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 5.0e-177 624.8 452 74.8
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 1.9e-176 622.9 450 73.8
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 4.2e-176 621.7 454 74.7
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 2.3e-174 615.9 452 73.5
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 2.5e-173 612.5 452 73.0
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 3.3e-173 612.1 450 73.1
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 7.4e-173 610.9 453 74.0
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 5.9e-170 601.3 452 71.0
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 5.5e-168 594.7 449 69.9
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 9.4e-168 594.0 451 69.6
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 4.7e-167 591.7 450 70.9
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 4.7e-167 591.7 457 68.1
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 6.1e-167 591.3 452 69.0
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 2.3e-166 589.3 449 69.9
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 5.1e-166 588.2 436 70.6
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 1.5e-165 586.6 448 70.3
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 2.6e-165 585.9 457 68.9
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 7.4e-165 584.3 448 70.3
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 7.4e-165 584.3 448 70.3
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 4.1e-163 578.6 450 67.3
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 5.9e-162 574.7 440 69.8
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 1.3e-161 573.5 450 67.3
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 6.5e-161 571.2 450 69.1
Atru.chr3.1841 Acer truncatum HOM05D003886 ORTHO05D004587 3.2e-160 568.9 464 66.2
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 3.2e-160 568.9 452 67.9
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 9.4e-160 567.4 450 67.1
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 1.2e-159 567.0 450 68.0
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 1.6e-159 566.6 449 67.7
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 3.0e-158 562.4 448 67.4
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 1.1e-157 560.5 455 66.4
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 1.5e-157 560.1 452 67.5
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 1.5e-157 560.1 449 66.4
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 1.5e-157 560.1 448 66.3
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 4.4e-157 558.5 452 67.5
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 4.4e-157 558.5 448 66.3
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 5.7e-157 558.1 451 66.5
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 5.7e-157 558.1 450 67.1
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 9.7e-157 557.4 453 66.2
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 1.3e-156 557.0 453 66.2
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 2.8e-156 555.8 457 66.7
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 4.8e-156 555.1 450 66.2
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 1.1e-155 553.9 483 62.5
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 1.4e-155 553.5 455 65.7
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 1.8e-155 553.1 456 66.0
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 4.1e-155 552.0 449 65.7
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 7.0e-155 551.2 454 66.1
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 9.1e-155 550.8 449 66.4
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 4.5e-154 548.5 454 66.1
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 7.7e-154 547.7 452 65.9
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 2.2e-153 546.2 469 63.8
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 2.9e-153 545.8 449 65.7
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 1.5e-152 543.5 449 67.0
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 1.5e-152 543.5 529 58.2
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 9.4e-152 540.8 452 64.8
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 9.4e-152 540.8 446 65.5
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 1.2e-151 540.4 470 63.2
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 1.2e-151 540.4 450 64.0
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 1.6e-151 540.0 459 64.3
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 3.6e-151 538.9 451 65.9
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 3.6e-151 538.9 450 63.8
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 4.7e-151 538.5 430 67.7
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 6.1e-151 538.1 450 64.9
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 8.0e-151 537.7 450 63.8
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 1.4e-150 537.0 438 67.8
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 1.8e-150 536.6 448 65.2
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 2.3e-150 536.2 430 67.9
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 4.0e-150 535.4 463 63.5
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 8.8e-150 534.3 449 64.6
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 8.8e-150 534.3 453 64.0
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 2.0e-149 533.1 449 64.4
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 2.6e-149 532.7 454 62.6
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 5.7e-149 531.6 449 64.8
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 2.8e-148 529.3 450 64.2
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 3.7e-148 528.9 458 64.0
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 4.8e-148 528.5 469 63.1
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 4.1e-147 525.4 450 64.0
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 5.3e-147 525.0 447 63.3
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 9.1e-147 524.2 443 65.0
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.7e-145 520.0 445 63.8
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 1.7e-145 520.0 450 62.4
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 2.9e-145 519.2 452 61.5
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 3.2e-144 515.8 450 62.9
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 9.4e-144 514.2 452 63.9
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 1.2e-143 513.8 450 62.2
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.6e-143 513.5 445 63.1
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 2.1e-143 513.1 484 60.3
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 3.6e-143 512.3 445 62.0
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 6.1e-143 511.5 445 62.0
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 2.6e-141 506.1 451 62.1
MBI14_g11787_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 1.1e-136 490.7 409 64.3
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 1.1e-136 490.7 421 64.4
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 1.9e-136 490.0 449 61.7
Lsat_1_v5_gn_3_52161 Lactuca sativa HOM05D003886 ORTHO05D004587 2.1e-135 486.5 412 64.3
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 4.7e-135 485.3 449 61.2
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 1.8e-134 483.4 516 54.1
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 2.3e-134 483.0 425 63.5
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 6.8e-134 481.5 442 60.4
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 4.1e-131 472.2 452 58.8
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 2.9e-129 466.1 450 59.6
Os08g0338900 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 2.3e-126 456.4 448 56.0
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 1.1e-123 447.6 451 55.7
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 2.7e-122 443.0 418 60.3
BolC2t09627H Brassica oleracea HOM05D003886 ORTHO05D004587 5.0e-121 438.7 339 69.9
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 4.3e-120 435.6 432 56.5
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 4.3e-120 435.6 438 57.1
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 3.6e-119 432.6 404 60.6
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 8.9e-118 427.9 454 55.7
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 1.4e-110 404.1 508 50.2
arahy.Tifrunner.gnm1.ann1.78GTJP Arachis hypogaea HOM05D003886 ORTHO05D004587 8.3e-108 394.8 291 71.8
CDE06G2124 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.6e-103 380.6 372 57.0
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 4.7e-103 379.0 433 51.5
Ciclev10021199m.g Citrus clementina HOM05D003886 ORTHO05D004587 3.3e-96 356.3 315 63.5
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 5.6e-96 355.5 465 46.9
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 1.4e-94 350.9 449 46.5
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 9.0e-94 348.2 448 46.4
Pp3c23_7050 Physcomitrium patens HOM05D003886 ORTHO05D004587 3.9e-89 332.8 443 45.8
Nitab4.5_0000389g0130 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.6e-87 327.4 280 63.2
ECA228G0002 Erigeron canadensis HOM05D003886 ORTHO05D004587 1.7e-84 317.4 321 56.7
CARHR072690 Cardamine hirsuta HOM05D003886 ORTHO05D004587 9.3e-83 311.6 195 83.1
Cpa.g.sc10.20 Carica papaya HOM05D003886 ORTHO05D004587 7.9e-82 308.5 195 78.5
ATR0751G140 Amborella trichopoda HOM05D003886 ORTHO05D004587 5.3e-78 295.8 332 54.2
Pp3c16_8390 Physcomitrium patens HOM05D003886 ORTHO05D004587 1.1e-72 278.1 452 40.3
ClCG03G018020 Citrullus lanatus HOM05D003886 ORTHO05D004587 2.6e-69 266.9 286 54.9
PGSC0003DMG400013092 Solanum tuberosum HOM05D003886 ORTHO05D004587 3.2e-67 260.0 195 67.2
Ah.14g084510 Amaranthus hybridus HOM05D003886 ORTHO05D004587 1.0e-65 255.0 519 36.4
Os09g0284600 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 6.3e-63 245.7 203 63.1
CBR_g38268 Chara braunii HOM05D003886 ORTHO05D004587 1.4e-59 234.6 331 43.2
CAN.G1586.1 Capsicum annuum HOM05D003886 ORTHO05D004587 3.2e-59 233.4 232 57.8
Cpa.g.sc10.19 Carica papaya HOM05D003886 ORTHO05D004587 9.4e-59 231.9 186 67.7
Haze_16249 Corylus avellana HOM05D003886 ORTHO05D004587 8.2e-55 218.8 254 52.4
Nn8g38501 Nelumbo nucifera HOM05D003886 ORTHO05D004587 1.9e-51 207.6 165 66.7
Zm00001eb097400 Zea mays HOM05D003886 ORTHO05D004587 5.1e-49 199.5 214 52.3
HanXRQChr08g0234351 Helianthus annuus HOM05D003886 ORTHO05D004587 9.7e-48 195.3 158 67.7
ClCG03G018040 Citrullus lanatus HOM05D003886 ORTHO05D004587 2.4e-46 190.7 131 74.8
SEGI_16863 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 5.9e-45 186.0 173 55.5
ATR0751G177 Amborella trichopoda HOM05D003886 ORTHO05D004587 5.2e-41 172.9 138 64.5
BcaB05g25167 Brassica carinata HOM05D003886 ORTHO05D004587 3.3e-40 170.2 119 77.3
SEGI_11104 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 1.3e-36 158.3 275 38.9
MCO08G116 Micromonas commoda HOM05D003886 ORTHO05D004587 3.2e-35 153.7 348 33.6
Aqoxy6G02601 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 1.2e-32 145.2 158 51.3
Nitab4.5_0000389g0110 Nicotiana tabacum HOM05D003886 ORTHO05D004587 4.8e-31 139.8 162 44.4
Cre03.g196400 Chlamydomonas reinhardtii HOM05D003886 ORTHO05D004587 7.7e-29 132.5 467 27.8
Haze_16250 Corylus avellana HOM05D003886 ORTHO05D004587 5.0e-28 129.8 123 54.5
PRCOL_00004606 Prasinoderma coloniale HOM05D003886 ORTHO05D004587 8.5e-28 129.0 297 32.3
MBI11_g15900_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 4.4e-24 116.7 93 62.4
arahy.Tifrunner.gnm1.ann1.6KK5MR Arachis hypogaea HOM05D003886 ORTHO05D004587 5.4e-22 109.8 117 59.0
BcaB05g25166 Brassica carinata HOM05D000912 ORTHO05D001232 2.7e-21 107.5 75 74.7
GSVIVG01024509001 Vitis vinifera HOM05D003886 ORTHO05D004587 3.3e-19 100.5 67 80.6
arahy.Tifrunner.gnm1.ann1.K7FQ1R Arachis hypogaea HOM05D003886 ORTHO05D019782 6.1e-18 96.3 118 53.4
arahy.Tifrunner.gnm1.ann1.RANL81 Arachis hypogaea HOM05D003886 ORTHO05D004587 1.2e-16 92.0 156 45.5
arahy.Tifrunner.gnm1.ann1.F9GSXH Arachis hypogaea HOM05D003886 ORTHO05D019782 1.8e-14 84.7 128 48.4
Gohir.A07G077000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 3.2e-14 84.0 52 76.9
Lj5C312T17 Lonicera japonica HOM05D001538 ORTHO05D004587 2.5e-11 74.3 52 73.1
CAN.G1600.1 Capsicum annuum HOM05D003886 ORTHO05D004587 5.6e-11 73.2 53 71.7
SHI49864 Sapria himalayana HOM05D003886 ORTHO05D004587 4.7e-10 70.1 40 85.0
Dinv30975 Davidia involucrata HOM05D000190 ORTHO05D000113 1.3e-07 62.0 59 54.2
ClCG03G018030 Citrullus lanatus HOM05D003886 ORTHO05D004587 2.2e-07 61.2 40 80.0
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 4.9e-07 60.1 63 50.8
SHI44505 Sapria himalayana HOM05D003886 ORTHO05D009901 2.4e-06 57.8 27 88.9


User provided reference genes

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