Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g14790 Schrenkiella parvula HOM05D007146 ORTHO05D008971 8.7e-182 640.2 326 100.0
AT1G16650 Arabidopsis thaliana HOM05D007146 ORTHO05D008971 2.8e-156 555.4 325 86.8
C05p14940 Brassica napus HOM05D007146 ORTHO05D008971 3.1e-155 552.0 324 87.0
AL1G28820 Arabidopsis lyrata HOM05D007146 ORTHO05D008971 6.9e-155 550.8 324 84.6
Carub.0001s1639 Capsella rubella HOM05D007146 ORTHO05D008971 6.9e-155 550.8 324 85.5
BolC5t30209H Brassica oleracea HOM05D007146 ORTHO05D008971 9.1e-155 550.4 325 87.1
BcaC05g25529 Brassica carinata HOM05D007146 ORTHO05D008971 1.2e-154 550.1 325 87.1
Thhalv10007372m.g Eutrema salsugineum HOM05D007146 ORTHO05D008971 1.1e-152 543.5 324 85.5
A06p12640 Brassica napus HOM05D007146 ORTHO05D008971 7.4e-149 530.8 324 84.3
BraA06t24425Z Brassica rapa HOM05D007146 ORTHO05D008971 1.3e-148 530.0 324 84.6
Aa31LG7G1140 Aethionema arabicum HOM05D007146 ORTHO05D008971 3.1e-139 498.8 321 79.8
THA.LOC104812351 Tarenaya hassleriana HOM05D007146 ORTHO05D008971 6.8e-126 454.5 341 70.7
GSVIVG01020477001 Vitis vinifera HOM05D007146 ORTHO05D008971 1.7e-100 370.2 350 58.0
PGR083G2275 Punica granatum HOM05D007146 ORTHO05D008971 1.9e-96 356.7 333 56.5
FvH4_3g16020 Fragaria vesca HOM05D007146 ORTHO05D008971 7.3e-96 354.8 364 54.1
FAN11G2635 Fragaria x ananassa HOM05D007146 ORTHO05D008971 7.3e-96 354.8 365 54.0
RcHm_v2.0_Chr5g0027001 Rosa chinensis HOM05D007146 ORTHO05D008971 7.3e-96 354.8 363 54.3
FAN25G2803 Fragaria x ananassa HOM05D007146 ORTHO05D008971 9.5e-96 354.4 364 53.8
Atru.chr2.1879 Acer truncatum HOM05D007146 ORTHO05D008971 1.1e-94 350.9 371 53.6
Phvul.005G055600 Phaseolus vulgaris HOM05D007146 ORTHO05D008971 2.3e-94 349.7 358 52.0
Prupe.4G143400 Prunus persica HOM05D007146 ORTHO05D008971 1.7e-92 343.6 363 52.9
HanXRQChr05g0160631 Helianthus annuus HOM05D007146 ORTHO05D008971 2.9e-92 342.8 324 56.8
CiPaw.11G069000 Carya illinoinensis HOM05D007146 ORTHO05D008971 3.7e-92 342.4 364 53.3
Potri.007G065300 Populus trichocarpa HOM05D007146 ORTHO05D008971 6.4e-92 341.7 360 53.9
Eucgr.F01450 Eucalyptus grandis HOM05D007146 ORTHO05D008971 2.4e-91 339.7 338 57.1
CSS0042492 Camellia sinensis var. sinensis HOM05D007146 ORTHO05D008971 3.2e-91 339.3 346 54.6
Cc05_g15970 Coffea canephora HOM05D007146 ORTHO05D008971 1.2e-90 337.4 379 50.9
Glyma.08G173200 Glycine max HOM05D007146 ORTHO05D008971 2.1e-90 336.7 360 51.4
Solyc07g066340.3 Solanum lycopersicum HOM05D007146 ORTHO05D008971 2.1e-90 336.7 351 54.4
Sopen07g034520 Solanum pennellii HOM05D007146 ORTHO05D008971 4.6e-90 335.5 347 54.5
MD05G1215600 Malus domestica HOM05D007146 ORTHO05D008971 1.0e-89 334.3 363 51.2
Medtr2g064450 Medicago truncatula HOM05D007146 ORTHO05D008971 1.3e-89 334.0 360 53.1
COL.COLO4_05069 Corchorus olitorius HOM05D007146 ORTHO05D008971 1.7e-89 333.6 364 51.9
SGA_v2.0_scaffold186G40227 Striga asiatica HOM05D007146 ORTHO05D008971 1.7e-89 333.6 347 53.3
TPR.G9764 Trifolium pratense HOM05D007146 ORTHO05D008971 3.0e-89 332.8 360 52.2
Lj3g0000430 Lotus japonicus HOM05D007146 ORTHO05D008971 5.1e-89 332.0 359 52.4
Nn7g37748 Nelumbo nucifera HOM05D007146 ORTHO05D008971 5.1e-89 332.0 368 51.9
Gorai.004G269700 Gossypium raimondii HOM05D007146 ORTHO05D008971 2.5e-88 329.7 366 51.6
TWI38G0129 Tripterygium wilfordii HOM05D007146 ORTHO05D008971 4.3e-88 328.9 389 48.6
EL10Ac4g08556 Beta vulgaris HOM05D007146 ORTHO05D008971 9.5e-88 327.8 351 54.1
TAR627G0841 Trochodendron aralioides HOM05D007146 ORTHO05D008971 9.5e-88 327.8 385 49.6
Lalb_Chr25g0285151 Lupinus albus HOM05D007146 ORTHO05D008971 1.6e-87 327.0 358 51.7
Sabra07G0052900 Salix brachista HOM05D007146 ORTHO05D008971 1.6e-87 327.0 360 51.9
DCAR_009636 Daucus carota HOM05D007146 ORTHO05D008971 2.8e-87 326.2 373 50.9
CAN.G943.29 Capsicum annuum HOM05D007146 ORTHO05D008971 1.1e-86 324.3 351 51.3
PGSC0003DMG401022133 Solanum tuberosum HOM05D007146 ORTHO05D008971 1.1e-86 324.3 347 51.9
CSS0033590 Camellia sinensis var. sinensis HOM05D007146 ORTHO05D008971 1.4e-86 323.9 399 48.9
SalBow8G2846 Salvia bowleyana HOM05D007146 ORTHO05D008971 1.4e-86 323.9 345 51.9
PSO675G2245 Papaver somniferum HOM05D007146 ORTHO05D008971 5.2e-86 322.0 380 50.5
CsaV3_2G022170 Cucumis sativus L. HOM05D007146 ORTHO05D008971 1.2e-85 320.9 350 51.1
ClCG11G016310 Citrullus lanatus HOM05D007146 ORTHO05D008971 1.5e-85 320.5 352 51.7
Duzib213G0540 Durio zibethinus HOM05D007146 ORTHO05D008971 1.5e-85 320.5 382 49.2
Peaxi162Scf00232g01133 Petunia axillaris HOM05D007146 ORTHO05D008971 9.9e-85 317.8 339 52.2
Sed0009835 Sechium edule HOM05D007146 ORTHO05D008971 7.1e-83 311.6 345 51.0
PSO541G2405 Papaver somniferum HOM05D007146 ORTHO05D008971 9.2e-83 311.2 377 50.1
Rhsim06G0237700 Rhododendron simsii HOM05D007146 ORTHO05D008971 2.1e-82 310.1 396 45.7
Aqoxy4G00043_Aqoxy4G00044 Aquilegia oxysepala HOM05D007146 ORTHO05D008971 4.6e-82 308.9 384 46.9
vmacro11655 Vaccinium macrocarpon HOM05D007146 ORTHO05D008971 3.9e-81 305.8 400 45.8
HPP92_018676 Vanilla planifolia HOM05D007146 ORTHO05D008971 9.6e-80 301.2 348 49.7
arahy.Tifrunner.gnm1.ann1.L14HV7 Arachis hypogaea HOM05D007146 ORTHO05D008971 3.6e-79 299.3 382 45.8
arahy.Tifrunner.gnm1.ann1.5W7G8A Arachis hypogaea HOM05D007146 ORTHO05D008971 3.1e-78 296.2 382 46.1
Lsat_1_v5_gn_9_46800 Lactuca sativa HOM05D007146 ORTHO05D008971 1.3e-76 290.8 325 50.5
HPP92_018693 Vanilla planifolia HOM05D007146 ORTHO05D008971 1.3e-76 290.8 373 47.2
ATR1098G072 Amborella trichopoda HOM05D007146 ORTHO05D008971 2.9e-76 289.7 376 45.5
Manes.03G082700 Manihot esculenta HOM05D007146 ORTHO05D008971 1.6e-74 283.9 361 47.6
Zm00001eb135900 Zea mays HOM05D007146 ORTHO05D008971 1.6e-74 283.9 330 47.9
Oeu002808.1 Olea europaea HOM05D007146 ORTHO05D008971 4.6e-74 282.3 435 42.1
Os12g0610500 Oryza sativa ssp. japonica HOM05D007146 ORTHO05D008971 5.1e-73 278.9 358 45.0
CARHR017120 Cardamine hirsuta HOM05D007146 ORTHO05D008971 7.3e-72 275.0 163 84.7
unitig_749.g13702 Utricularia gibba HOM05D007146 ORTHO05D008971 2.2e-68 263.5 339 46.3
FAN21G1125 Fragaria x ananassa HOM05D007146 ORTHO05D008971 1.6e-66 257.3 304 49.3
VMungo1080G0158 Vigna mungo HOM05D007146 ORTHO05D008971 1.9e-64 250.4 298 47.7
MBI02_g25677_MAGBIO Magnolia biondii HOM05D007146 ORTHO05D008971 4.5e-61 239.2 329 45.3
Gohir.D08G252900 Gossypium hirsutum HOM05D007146 ORTHO05D008971 7.6e-61 238.4 308 46.4
Lj8C186T10 Lonicera japonica HOM05D007146 ORTHO05D008971 1.7e-60 237.3 295 48.8
SMO143G0033 Selaginella moellendorffii HOM05D007146 ORTHO05D008971 1.4e-59 234.2 293 43.3
MELO3C010557.2 Cucumis melo HOM05D007146 ORTHO05D008971 3.2e-59 233.0 349 43.0
AagrBONN_evm.TU.Sc2ySwM_368.537 Anthoceros agrestis HOM05D007146 ORTHO05D008971 4.2e-59 232.6 329 43.2
Pp3c14_6050 Physcomitrium patens HOM05D007146 ORTHO05D008971 9.3e-59 231.5 365 40.0
Nitab4.5_0002933g0010 Nicotiana tabacum HOM05D007146 ORTHO05D008971 6.0e-58 228.8 330 41.8
Psat1g002520 Pisum sativum HOM05D007146 ORTHO05D008971 3.9e-57 226.1 212 57.5
Thecc.07G156300 Theobroma cacao HOM05D007146 ORTHO05D008971 2.5e-56 223.4 246 52.0
Pp3c1_21800 Physcomitrium patens HOM05D007146 ORTHO05D008971 4.9e-52 209.1 408 33.6
CDE03G0452 Ceratophyllum demersum HOM05D007146 ORTHO05D008971 1.4e-51 207.6 319 41.7
Ciclev10022203m.g Citrus clementina HOM05D007146 ORTHO05D008971 9.0e-46 188.3 212 50.0
Nitab4.5_0000313g0010 Nicotiana tabacum HOM05D007146 ORTHO05D008971 7.6e-45 185.3 176 55.1
Gohir.A08G232700 Gossypium hirsutum HOM05D007146 ORTHO05D008971 3.3e-40 169.9 221 44.8
Ca_03695_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 2.4e-38 163.7 188 50.0
Ca_03700_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 2.4e-38 163.7 188 50.0
Ah.06g187050 Amaranthus hybridus HOM05D007146 ORTHO05D008971 1.9e-35 154.1 225 41.3
DCAR_002379 Daucus carota HOM05D007146 ORTHO05D008971 2.1e-34 150.6 192 46.4
Ah.06g187020 Amaranthus hybridus HOM05D007146 ORTHO05D008971 5.1e-33 146.0 170 49.4
Migut.M01565 Erythranthe guttata HOM05D007146 ORTHO05D008971 5.1e-33 146.0 158 52.5
Sc07g0003080 Simmondsia chinensis HOM05D007146 ORTHO05D008971 1.5e-24 117.9 90 62.2
Cpa.g.sc10.30 Carica papaya HOM05D007146 ORTHO05D008971 1.7e-23 114.4 143 47.6
SEGI_13316 Sequoiadendron giganteum HOM05D007146 ORTHO05D008971 8.2e-23 112.1 162 40.7
Ciclev10021587m.g Citrus clementina HOM05D007146 ORTHO05D008971 7.7e-13 79.0 84 54.8
Thecc.07G156000 Theobroma cacao HOM05D007146 ORTHO05D008971 3.0e-09 67.0 82 51.2
AUR62041925 Chenopodium quinoa HOM05D007146 ORTHO05D008971 2.6e-08 63.9 88 42.0
Hund10306 Selenicereus undatus HOM05D007146 ORTHO05D008971 1.3e-07 61.6 101 39.6
Cfa023972 Carpinus fangiana HOM05D007146 ORTHO05D008971 1.4e-06 58.2 301 22.3
MSTRG.16117 Avicennia marina HOM05D007146 ORTHO05D008971 5.4e-06 56.2 90 46.7


User provided reference genes

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