Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g14310 Schrenkiella parvula HOM05D006125 ORTHO05D007404 9.9e-31 136.3 79 100.0
Carub.0001s1580 Capsella rubella HOM05D006125 ORTHO05D007404 7.8e-20 100.1 56 82.1
AT1G16000 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 3.9e-19 97.8 56 78.6
Thhalv10009235m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 3.9e-19 97.8 56 82.1
BraA07t31987Z Brassica rapa HOM05D006125 ORTHO05D007404 5.1e-19 97.4 56 76.8
BcaC08g45345 Brassica carinata HOM05D006125 ORTHO05D007404 1.9e-18 95.5 56 75.0
C06p29590 Brassica napus HOM05D006125 ORTHO05D007404 1.9e-18 95.5 56 75.0
BolC6t38124H Brassica oleracea HOM05D006125 ORTHO05D007404 1.9e-18 95.5 56 75.0
BcaC08g47537 Brassica carinata HOM05D006125 ORTHO05D007404 5.6e-18 94.0 56 78.6
A07p44800 Brassica napus HOM05D006125 ORTHO05D007404 5.6e-18 94.0 56 78.6
C06p53620 Brassica napus HOM05D006125 ORTHO05D007404 5.6e-18 94.0 56 78.6
BolC6t40378H Brassica oleracea HOM05D006125 ORTHO05D007404 5.6e-18 94.0 56 78.6
AL1G28160 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 7.3e-18 93.6 57 75.4
BcaB02g08714 Brassica carinata HOM05D006125 ORTHO05D007404 7.3e-18 93.6 56 75.0
CARHR073580 Cardamine hirsuta HOM05D006125 ORTHO05D007404 7.3e-18 93.6 70 65.7
Aa31LG4G1200 Aethionema arabicum HOM05D006125 ORTHO05D007404 4.8e-17 90.9 56 71.4
A07p26910 Brassica napus HOM05D006125 ORTHO05D007404 4.8e-17 90.9 56 75.0
BraA07t30336Z Brassica rapa HOM05D006125 ORTHO05D007404 8.1e-17 90.1 56 75.0
Thhalv10019388m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 8.1e-17 90.1 56 75.0
Aa31LG7G580 Aethionema arabicum HOM05D006125 ORTHO05D007404 1.4e-16 89.4 57 75.4
AL2G40490 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 3.1e-16 88.2 54 74.1
Gohir.A06G114500 Gossypium hirsutum HOM05D006125 ORTHO05D007404 5.3e-16 87.4 70 61.4
Sp5g34850 Schrenkiella parvula HOM05D006125 ORTHO05D007404 5.3e-16 87.4 41 92.7
CARHR016510 Cardamine hirsuta HOM05D006125 ORTHO05D007404 6.9e-16 87.0 56 75.0
Gohir.D06G119100 Gossypium hirsutum HOM05D006125 ORTHO05D007404 9.0e-16 86.7 70 61.4
THA.LOC104808176 Tarenaya hassleriana HOM05D006125 ORTHO05D007404 1.5e-15 85.9 56 69.6
AT1G80890 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 2.6e-15 85.1 56 71.4
Os12g0556400 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 7.6e-15 83.6 62 61.3
Gorai.010G136700 Gossypium raimondii HOM05D006125 ORTHO05D007404 9.9e-15 83.2 76 55.3
Zm00001eb176360 Zea mays HOM05D006125 ORTHO05D007404 9.9e-15 83.2 62 61.3
Thecc.06G043200 Theobroma cacao HOM05D006125 ORTHO05D007404 1.3e-14 82.8 55 65.5
Cc04_g05190 Coffea canephora HOM05D006125 ORTHO05D007404 2.2e-14 82.0 65 56.9
Actinidia25476 Actinidia chinensis HOM05D006125 ORTHO05D007404 4.9e-14 80.9 70 57.1
HanXRQChr05g0153751 Helianthus annuus HOM05D006125 ORTHO05D007404 4.9e-14 80.9 53 67.9
SGA_v2.0_scaffold5G02790 Striga asiatica HOM05D006125 ORTHO05D007404 4.9e-14 80.9 53 69.8
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 1.4e-13 79.3 57 66.7
ECA246G3825 Erigeron canadensis HOM05D006125 ORTHO05D007404 1.9e-13 79.0 52 65.4
Ciclev10026865m.g Citrus clementina HOM05D006125 ORTHO05D007404 2.4e-13 78.6 70 55.7
Dinv21417 Davidia involucrata HOM05D006125 ORTHO05D007404 2.4e-13 78.6 70 55.7
Oeu009806.1 Olea europaea HOM05D006125 ORTHO05D007404 2.4e-13 78.6 53 62.3
CAN.G407.2 Capsicum annuum HOM05D006125 ORTHO05D007404 4.2e-13 77.8 67 55.2
Cpa.g.sc10.63 Carica papaya HOM05D006125 ORTHO05D007404 4.2e-13 77.8 56 62.5
Nitab4.5_0002700g0200 Nicotiana tabacum HOM05D006125 ORTHO05D007404 4.2e-13 77.8 58 55.2
SalBow7G4057 Salvia bowleyana HOM05D006125 ORTHO05D007404 4.2e-13 77.8 55 63.6
Duzib160G0610 Durio zibethinus HOM05D006125 ORTHO05D007404 7.1e-13 77.0 74 51.4
Nitab4.5_0009867g0040 Nicotiana tabacum HOM05D006125 ORTHO05D007404 7.1e-13 77.0 55 58.2
CANSAT56G2558 Cannabis sativa HOM05D006125 ORTHO05D007404 9.3e-13 76.6 55 60.0
Hma1.2p1_0329F.1_g127170 Hydrangea macrophylla HOM05D006125 ORTHO05D007404 9.3e-13 76.6 53 62.3
HanXRQChr08g0219721 Helianthus annuus HOM05D006125 ORTHO05D007404 1.2e-12 76.3 39 82.1
Manes.11G068700 Manihot esculenta HOM05D006125 ORTHO05D007404 1.2e-12 76.3 72 48.6
QL07p030560 Quercus lobata HOM05D006125 ORTHO05D007404 1.2e-12 76.3 54 61.1
RcHm_v2.0_Chr2g0132751 Rosa chinensis HOM05D006125 ORTHO05D007404 1.2e-12 76.3 55 60.0
Dinv23278 Davidia involucrata HOM05D006125 ORTHO05D007404 2.1e-12 75.5 56 58.9
Lj3g0014233 Lotus japonicus HOM05D006125 ORTHO05D007404 2.1e-12 75.5 70 45.7
PGR031G3360 Punica granatum HOM05D006125 ORTHO05D007404 2.1e-12 75.5 70 52.9
PGR037G0004 Punica granatum HOM05D006125 ORTHO05D007404 2.1e-12 75.5 70 52.9
Solyc03g117580.3 Solanum lycopersicum HOM05D006125 ORTHO05D007404 2.7e-12 75.1 56 57.1
Sopen03g036490 Solanum pennellii HOM05D006125 ORTHO05D007404 2.7e-12 75.1 56 57.1
Prupe.2G074900 Prunus persica HOM05D006125 ORTHO05D007404 3.5e-12 74.7 56 60.7
QL07p031505 Quercus lobata HOM05D006125 ORTHO05D007404 3.5e-12 74.7 54 59.3
COL.COLO4_26743 Corchorus olitorius HOM05D006125 ORTHO05D007404 4.6e-12 74.3 62 53.2
Os08g0272000 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 4.6e-12 74.3 62 54.8
TAR383G0490 Trochodendron aralioides HOM05D006125 ORTHO05D007404 4.6e-12 74.3 52 61.5
Eucgr.J03118 Eucalyptus grandis HOM05D006125 ORTHO05D007404 6.0e-12 73.9 70 48.6
MD17G1224400 Malus domestica HOM05D006125 ORTHO05D007404 7.9e-12 73.6 52 61.5
Potri.001G043300 Populus trichocarpa HOM05D006125 ORTHO05D007404 7.9e-12 73.6 70 47.1
ATR0580G075 Amborella trichopoda HOM05D006125 ORTHO05D007404 1.0e-11 73.2 54 59.3
Prupe.3G100100 Prunus persica HOM05D006125 ORTHO05D007404 1.0e-11 73.2 54 61.1
BcaB05g25217 Brassica carinata HOM05D006125 ORTHO05D007404 1.3e-11 72.8 61 62.3
MD09G1225600 Malus domestica HOM05D006125 ORTHO05D007404 1.3e-11 72.8 52 59.6
unitig_62.g23831 Utricularia gibba HOM05D006125 ORTHO05D007404 1.3e-11 72.8 65 53.8
Actinidia18251 Actinidia chinensis HOM05D006125 ORTHO05D007404 1.8e-11 72.4 70 52.9
DCAR_021146 Daucus carota HOM05D006125 ORTHO05D007404 1.8e-11 72.4 39 71.8
Phvul.010G162500 Phaseolus vulgaris HOM05D006125 ORTHO05D007404 1.8e-11 72.4 70 48.6
Ca_06644_v3 Cicer arietinum L. HOM05D006125 ORTHO05D007404 2.3e-11 72.0 65 49.2
PGSC0003DMG400014151 Solanum tuberosum HOM05D006125 ORTHO05D007404 2.3e-11 72.0 70 50.0
Duzib235G1153 Durio zibethinus HOM05D006125 ORTHO05D007404 3.0e-11 71.6 51 60.8
MELO3C023472.2 Cucumis melo HOM05D006125 ORTHO05D007404 3.9e-11 71.2 62 58.1
Sed0014955 Sechium edule HOM05D006125 ORTHO05D007404 3.9e-11 71.2 61 52.5
TWI12G0957 Tripterygium wilfordii HOM05D006125 ORTHO05D007404 5.1e-11 70.9 57 52.6
CiPaw.09G167300 Carya illinoinensis HOM05D006125 ORTHO05D007404 6.7e-11 70.5 54 55.6
ClCG09G003380 Citrullus lanatus HOM05D006125 ORTHO05D007404 8.7e-11 70.1 52 59.6
Sc12g0007910 Simmondsia chinensis HOM05D006125 ORTHO05D007404 8.7e-11 70.1 70 47.1
Migut.I00687 Erythranthe guttata HOM05D006125 ORTHO05D007404 1.1e-10 69.7 62 53.2
Peaxi162Scf00553g00539 Petunia axillaris HOM05D006125 ORTHO05D007404 1.1e-10 69.7 62 58.1
Atru.chr1.2788 Acer truncatum HOM05D006125 ORTHO05D007404 1.5e-10 69.3 52 55.8
CSS0032300 Camellia sinensis var. sinensis HOM05D006125 ORTHO05D007404 2.5e-10 68.6 51 56.9
CsaV3_7G031850 Cucumis sativus L. HOM05D006125 ORTHO05D007404 2.5e-10 68.6 48 66.7
Medtr4g007290 Medicago truncatula HOM05D006125 ORTHO05D007404 2.5e-10 68.6 66 43.9
CDE03G0106 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 3.3e-10 68.2 40 67.5
FAN02G1155 Fragaria x ananassa HOM05D006125 ORTHO05D007404 3.3e-10 68.2 40 67.5
QL04p040226 Quercus lobata HOM05D006125 ORTHO05D007404 3.3e-10 68.2 56 53.6
Rhsim08G0204300 Rhododendron simsii HOM05D006125 ORTHO05D007404 3.3e-10 68.2 53 58.5
HPP92_003757 Vanilla planifolia HOM05D006125 ORTHO05D007404 4.3e-10 67.8 61 45.9
CDE06G2663 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 5.6e-10 67.4 40 67.5
AUR62034053 Chenopodium quinoa HOM05D006125 ORTHO05D007404 7.4e-10 67.0 70 45.7
Glyma.08G219900 Glycine max HOM05D006125 ORTHO05D007404 7.4e-10 67.0 54 50.0
FAN05G4250 Fragaria x ananassa HOM05D006125 ORTHO05D007404 9.6e-10 66.6 40 65.0
Psat7g263200 Pisum sativum HOM05D006125 ORTHO05D007404 9.6e-10 66.6 53 52.8
TPR.G29449 Trifolium pratense HOM05D006125 ORTHO05D007404 9.6e-10 66.6 55 52.7
TPR.G3325 Trifolium pratense HOM05D006125 ORTHO05D007404 9.6e-10 66.6 45 55.6
AUR62040628 Chenopodium quinoa HOM05D006125 ORTHO05D007404 1.3e-09 66.2 53 50.9
Haze_20423 Corylus avellana HOM05D006125 ORTHO05D007404 1.3e-09 66.2 56 48.2
SalBow6G4114 Salvia bowleyana HOM05D006125 ORTHO05D007404 1.3e-09 66.2 43 62.8
arahy.Tifrunner.gnm1.ann1.CEK6A4 Arachis hypogaea HOM05D006125 ORTHO05D007404 1.6e-09 65.9 55 49.1
arahy.Tifrunner.gnm1.ann1.P1DY4U Arachis hypogaea HOM05D006125 ORTHO05D007404 1.6e-09 65.9 55 49.1
Glyma.07G021900 Glycine max HOM05D006125 ORTHO05D007404 1.6e-09 65.9 54 50.0
BolC2t09694H Brassica oleracea HOM05D006125 ORTHO05D007404 2.1e-09 65.5 38 73.7
Lalb_Chr04g0264571 Lupinus albus HOM05D006125 ORTHO05D007404 2.1e-09 65.5 57 45.6
MBI14_g09098_MAGBIO Magnolia biondii HOM05D006125 ORTHO05D007404 2.1e-09 65.5 65 43.1
Sed0010339 Sechium edule HOM05D006125 ORTHO05D007404 2.1e-09 65.5 61 50.8
FvH4_6g28500 Fragaria vesca HOM05D006125 ORTHO05D007404 2.8e-09 65.1 40 62.5
FAN14G2502 Fragaria x ananassa HOM05D006125 ORTHO05D007404 2.8e-09 65.1 40 62.5
BNapus_Darmor_BZH_scaffold_293p00030 Brassica napus HOM05D006125 ORTHO05D007404 3.7e-09 64.7 41 68.3
Potri.003G183501 Populus trichocarpa HOM05D006125 ORTHO05D007404 1.4e-08 62.8 56 48.2
SHI11295 Sapria himalayana HOM05D000002 ORTHO05D000001 1.8e-08 62.4 40 57.5
Cfa017829 Carpinus fangiana HOM05D006125 ORTHO05D007404 2.4e-08 62.0 56 48.2
SEGI_23088 Sequoiadendron giganteum HOM05D006125 ORTHO05D007404 2.4e-08 62.0 52 48.1
GSVIVG01015983001 Vitis vinifera HOM05D006125 ORTHO05D007404 2.4e-08 62.0 46 58.7
Sabra03G0134100 Salix brachista HOM05D006125 ORTHO05D007404 3.1e-08 61.6 56 46.4
vmacro19061 Vaccinium macrocarpon HOM05D006125 ORTHO05D007404 3.1e-08 61.6 40 62.5
EL10Ac8g19423 Beta vulgaris HOM05D006125 ORTHO05D007404 4.0e-08 61.2 45 51.1
Manes.04G101402 Manihot esculenta HOM05D006125 ORTHO05D007404 4.0e-08 61.2 45 53.3
Sabra01G0029800 Salix brachista HOM05D006125 ORTHO05D007404 4.0e-08 61.2 43 51.2
Aqoxy7G03387 Aquilegia oxysepala HOM05D006125 ORTHO05D007404 9.0e-08 60.1 51 52.9
PSO782G1324 Papaver somniferum HOM05D006125 ORTHO05D007404 9.0e-08 60.1 54 53.7
Potri.004G051201 Populus trichocarpa HOM05D006125 ORTHO05D007404 1.3e-06 56.2 38 50.0
BolC6t38413H Brassica oleracea HOM05D006125 ORTHO05D007404 3.8e-06 54.7 47 63.8


User provided reference genes

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