Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g13790 Schrenkiella parvula HOM05D002282 ORTHO05D002403 1.5e-137 493.0 282 100.0
Thhalv10008433m.g Eutrema salsugineum HOM05D002282 ORTHO05D002403 9.7e-113 410.6 283 87.6
A08p31580 Brassica napus HOM05D002282 ORTHO05D002403 2.6e-110 402.5 282 81.2
C08p17190 Brassica napus HOM05D002282 ORTHO05D002403 1.4e-108 396.7 255 87.5
BolC8t49348H Brassica oleracea HOM05D002282 ORTHO05D002403 1.4e-108 396.7 255 87.5
BraA08t35080Z Brassica rapa HOM05D002282 ORTHO05D002403 1.9e-108 396.4 282 80.5
Carub.0001s1522 Capsella rubella HOM05D002282 ORTHO05D002403 3.2e-108 395.6 283 84.8
A06p11480 Brassica napus HOM05D002282 ORTHO05D002403 3.9e-106 388.7 285 81.4
CARHR015980 Cardamine hirsuta HOM05D002282 ORTHO05D002403 8.8e-106 387.5 284 80.6
AT1G15420 Arabidopsis thaliana HOM05D002282 ORTHO05D002403 2.2e-104 382.9 283 82.3
BcaC07g38789 Brassica carinata HOM05D002282 ORTHO05D002403 3.1e-103 379.0 256 84.0
BraA06t24325Z Brassica rapa HOM05D002282 ORTHO05D002403 9.1e-103 377.5 284 80.6
BcaB03g13061 Brassica carinata HOM05D002282 ORTHO05D002403 1.7e-101 373.2 284 80.6
AL1G27540 Arabidopsis lyrata HOM05D002282 ORTHO05D002403 4.2e-100 368.6 283 79.9
BolC5t30096H Brassica oleracea HOM05D002282 ORTHO05D002403 1.7e-96 356.7 283 77.4
C05p13600 Brassica napus HOM05D002282 ORTHO05D002403 1.8e-95 353.2 283 77.0
Aa31LG3G13660 Aethionema arabicum HOM05D002282 ORTHO05D002403 3.2e-84 315.8 228 77.2
BcaC07g41500 Brassica carinata HOM05D002282 ORTHO05D002403 3.8e-77 292.4 235 73.6
BolC8t52042H Brassica oleracea HOM05D002282 ORTHO05D002403 1.4e-74 283.9 176 88.1
BcaC05g25485 Brassica carinata HOM05D002282 ORTHO05D002403 5.0e-69 265.4 187 79.7
BcaB03g14539 Brassica carinata HOM05D002282 ORTHO05D002403 3.1e-66 256.1 176 84.7
THA.LOC104812495 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 1.4e-63 247.3 247 62.3
Cpa.g.sc336.4 Carica papaya HOM05D002282 ORTHO05D002403 3.2e-63 246.1 270 55.2
C08p44950 Brassica napus HOM05D002282 ORTHO05D002403 4.6e-62 242.3 181 77.9
COL.COLO4_23901 Corchorus olitorius HOM05D002282 ORTHO05D002403 3.9e-61 239.2 275 58.2
COL.COLO4_12890 Corchorus olitorius HOM05D002282 ORTHO05D002403 4.3e-60 235.7 274 58.0
Duzib235G0185 Durio zibethinus HOM05D002282 ORTHO05D002403 9.5e-60 234.6 269 57.2
Gohir.A05G124900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 3.6e-59 232.6 259 55.6
Gorai.009G129900 Gossypium raimondii HOM05D002282 ORTHO05D002403 6.2e-59 231.9 259 58.3
A09p61400 Brassica napus HOM05D002282 ORTHO05D002403 1.4e-58 230.7 165 80.0
Gohir.D05G125900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 1.8e-58 230.3 259 57.9
RcHm_v2.0_Chr1g0331681 Rosa chinensis HOM05D002282 ORTHO05D002403 1.8e-58 230.3 262 55.7
RcHm_v2.0_Chr5g0081181 Rosa chinensis HOM05D002282 ORTHO05D002403 4.0e-58 229.2 260 54.6
Thecc.06G073800 Theobroma cacao HOM05D002282 ORTHO05D002403 1.5e-57 227.3 264 54.2
Ciclev10025131m.g Citrus clementina HOM05D002282 ORTHO05D002403 5.8e-57 225.3 267 56.6
FAN25G3025 Fragaria x ananassa HOM05D002282 ORTHO05D002403 2.9e-56 223.0 222 58.1
FAN11G0586 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.4e-55 220.7 224 58.0
MD15G1387900 Malus domestica HOM05D002282 ORTHO05D002403 1.4e-55 220.7 290 52.4
Atru.chr1.3116 Acer truncatum HOM05D002282 ORTHO05D002403 4.1e-55 219.2 246 54.9
Prupe.6G012700 Prunus persica HOM05D002282 ORTHO05D002403 4.1e-55 219.2 262 56.1
Dinv30569 Davidia involucrata HOM05D002282 ORTHO05D002403 7.1e-55 218.4 224 57.6
FAN16G2654 Fragaria x ananassa HOM05D002282 ORTHO05D002403 3.9e-53 212.6 260 53.5
Nn2g11949 Nelumbo nucifera HOM05D002282 ORTHO05D002403 8.6e-53 211.5 259 51.7
CANSAT56G4088 Cannabis sativa HOM05D002282 ORTHO05D002403 1.1e-52 211.1 247 51.8
MBI04_g10418_MAGBIO Magnolia biondii HOM05D002282 ORTHO05D002403 5.6e-52 208.8 277 48.7
Potri.001G173300 Populus trichocarpa HOM05D002282 ORTHO05D002403 9.5e-52 208.0 276 49.3
CAN.G407.112 Capsicum annuum HOM05D002282 ORTHO05D002403 4.7e-51 205.7 271 49.8
Cc04_g04050 Coffea canephora HOM05D002282 ORTHO05D002403 4.7e-51 205.7 230 52.6
Sopen03g035310 Solanum pennellii HOM05D002282 ORTHO05D002403 4.7e-51 205.7 275 49.1
Lalb_Chr04g0262501 Lupinus albus HOM05D002282 ORTHO05D002403 6.2e-51 205.3 240 53.3
Lj3g0004862 Lotus japonicus HOM05D002282 ORTHO05D002403 8.1e-51 204.9 227 55.9
Peaxi162Scf00274g00850 Petunia axillaris HOM05D002282 ORTHO05D002403 8.1e-51 204.9 256 50.8
Actinidia15798 Actinidia chinensis HOM05D002282 ORTHO05D002403 1.4e-50 204.1 261 48.7
Solyc03g116380.4 Solanum lycopersicum HOM05D002282 ORTHO05D002403 1.4e-50 204.1 275 49.5
arahy.Tifrunner.gnm1.ann1.NNZF0Z Arachis hypogaea HOM05D002282 ORTHO05D002403 1.8e-50 203.8 260 50.8
CiPaw.01G244200 Carya illinoinensis HOM05D002282 ORTHO05D002403 1.8e-50 203.8 262 56.9
GSVIVG01017246001 Vitis vinifera HOM05D002282 ORTHO05D002403 1.8e-50 203.8 219 54.3
Nitab4.5_0002257g0110 Nicotiana tabacum HOM05D002282 ORTHO05D002403 2.3e-50 203.4 259 50.2
Phvul.010G153600 Phaseolus vulgaris HOM05D002282 ORTHO05D002403 3.1e-50 203.0 243 51.4
Haze_05779 Corylus avellana HOM05D002282 ORTHO05D002403 4.0e-50 202.6 236 60.2
Nitab4.5_0006574g0100 Nicotiana tabacum HOM05D002282 ORTHO05D002403 4.0e-50 202.6 259 50.2
Potri.003G060900 Populus trichocarpa HOM05D002282 ORTHO05D002403 8.9e-50 201.4 231 53.7
QL06p023750 Quercus lobata HOM05D002282 ORTHO05D002403 8.9e-50 201.4 240 55.0
DCAR_025482 Daucus carota HOM05D002282 ORTHO05D002403 2.0e-49 200.3 228 53.5
TAR383G0492 Trochodendron aralioides HOM05D002282 ORTHO05D002403 3.4e-49 199.5 200 58.0
Lj5A68G60 Lonicera japonica HOM05D002282 ORTHO05D002403 9.9e-49 198.0 203 55.2
PGSC0003DMG400000602 Solanum tuberosum HOM05D002282 ORTHO05D002403 9.9e-49 198.0 274 47.4
Hund00550 Selenicereus undatus HOM05D002282 ORTHO05D002403 1.3e-48 197.6 207 54.6
PGR031G0824 Punica granatum HOM05D002282 ORTHO05D002403 2.9e-48 196.4 239 53.1
SalBow1G0696 Salvia bowleyana HOM05D002282 ORTHO05D002403 6.4e-48 195.3 259 49.0
TWI18G0202 Tripterygium wilfordii HOM05D002282 ORTHO05D002403 6.4e-48 195.3 256 48.8
Sabra01G0138500 Salix brachista HOM05D002282 ORTHO05D002403 8.4e-48 194.9 234 51.7
arahy.Tifrunner.gnm1.ann1.CV1QS0 Arachis hypogaea HOM05D002282 ORTHO05D002403 4.1e-47 192.6 203 53.2
Eucgr.I02097 Eucalyptus grandis HOM05D002282 ORTHO05D002403 4.1e-47 192.6 248 52.0
TPR.G3896 Trifolium pratense HOM05D002282 ORTHO05D002403 4.1e-47 192.6 233 51.9
VMungo0331G0533 Vigna mungo HOM05D002282 ORTHO05D002403 5.4e-47 192.2 216 54.6
CiPaw.02G154700 Carya illinoinensis HOM05D002282 ORTHO05D002403 7.1e-47 191.8 241 57.7
CsaV3_7G032650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 1.2e-46 191.0 229 52.8
HanXRQChr04g0097161 Helianthus annuus HOM05D002282 ORTHO05D002403 2.1e-46 190.3 232 50.9
Lsat_1_v5_gn_1_33521 Lactuca sativa HOM05D002282 ORTHO05D002403 3.5e-46 189.5 200 56.0
Sed0003011 Sechium edule HOM05D002282 ORTHO05D002403 3.5e-46 189.5 235 51.1
CSS0048718 Camellia sinensis var. sinensis HOM05D002282 ORTHO05D002403 6.0e-46 188.7 209 53.6
HanXRQChr04g0096701 Helianthus annuus HOM05D002282 ORTHO05D002403 6.0e-46 188.7 220 52.3
HanXRQChr04g0097221 Helianthus annuus HOM05D002282 ORTHO05D002403 6.0e-46 188.7 220 52.3
Sed0027048 Sechium edule HOM05D002282 ORTHO05D002403 1.0e-45 188.0 236 50.8
Actinidia01770 Actinidia chinensis HOM05D002282 ORTHO05D002403 2.3e-45 186.8 224 50.9
Ah.01g020860 Amaranthus hybridus HOM05D000121 ORTHO05D000102 5.1e-45 185.7 237 51.5
AUR62011569 Chenopodium quinoa HOM05D002282 ORTHO05D002403 6.6e-45 185.3 183 57.4
Rhsim08G0216500 Rhododendron simsii HOM05D002282 ORTHO05D002403 1.1e-44 184.5 225 51.1
Medtr4g011300 Medicago truncatula HOM05D002282 ORTHO05D002403 1.9e-44 183.7 261 48.7
Psat7g255200 Pisum sativum HOM05D002282 ORTHO05D002403 4.3e-44 182.6 233 50.6
BraA09t41510Z Brassica rapa HOM05D002282 ORTHO05D002403 5.6e-44 182.2 114 87.7
ECA247G0800 Erigeron canadensis HOM05D002282 ORTHO05D002403 1.6e-43 180.6 217 49.3
Oeu045971.1 Olea europaea HOM05D002282 ORTHO05D002403 3.6e-43 179.5 180 56.7
MELO3C023398.2 Cucumis melo HOM05D002282 ORTHO05D002403 6.2e-43 178.7 200 53.0
Glyma.08G210000 Glycine max HOM05D002282 ORTHO05D002403 8.1e-43 178.3 229 48.9
EL10Ac9g21953 Beta vulgaris HOM05D000121 ORTHO05D000102 1.1e-42 177.9 222 50.9
QL05p027693 Quercus lobata HOM05D002282 ORTHO05D002403 5.2e-42 175.6 233 50.6
Hund06582 Selenicereus undatus HOM05D002282 ORTHO05D002403 1.2e-41 174.5 231 50.2
Aqoxy7G02081 Aquilegia oxysepala HOM05D002282 ORTHO05D002403 2.6e-41 173.3 231 48.9
SGA_v2.0_scaffold52G18905 Striga asiatica HOM05D002282 ORTHO05D002403 2.6e-41 173.3 233 48.9
ClCG09G002680 Citrullus lanatus HOM05D002282 ORTHO05D002403 6.4e-40 168.7 256 45.3
Glyma.07G032500 Glycine max HOM05D002282 ORTHO05D002403 6.4e-40 168.7 228 48.7
MSTRG.1400 Avicennia marina HOM05D002282 ORTHO05D002403 1.1e-39 167.9 262 45.8
AUR62016386 Chenopodium quinoa HOM05D002282 ORTHO05D002403 1.1e-39 167.9 193 53.4
Sabra03G0035200 Salix brachista HOM05D002282 ORTHO05D002403 1.1e-39 167.9 295 43.4
CDE07G0270 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 7.1e-39 165.2 257 45.5
Migut.C01081 Erythranthe guttata HOM05D002282 ORTHO05D002403 7.1e-39 165.2 231 47.2
vmacro18959 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 1.2e-38 164.5 246 44.7
PSO339G0191 Papaver somniferum HOM05D002282 ORTHO05D002403 6.0e-38 162.2 219 46.6
TPR.G8058 Trifolium pratense HOM05D002282 ORTHO05D002403 7.8e-38 161.8 146 61.0
PSO170G0153 Papaver somniferum HOM05D002282 ORTHO05D002403 2.3e-37 160.2 201 47.8
Os01g0649000 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 1.1e-36 157.9 235 45.1
PSO782G5325 Papaver somniferum HOM05D002282 ORTHO05D002403 1.1e-36 157.9 174 55.2
Os12g0634800 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 1.5e-36 157.5 223 44.4
Duzib192G0585 Durio zibethinus HOM05D002282 ORTHO05D002403 6.2e-35 152.1 115 67.0
ATR0580G098 Amborella trichopoda HOM05D002282 ORTHO05D002403 8.1e-35 151.8 233 44.6
MD15G1388000 Malus domestica HOM05D002282 ORTHO05D002403 1.1e-34 151.4 161 55.9
Glyma.13G363200 Glycine max HOM05D002282 ORTHO05D002403 3.1e-34 149.8 210 47.1
Lj3g0012512 Lotus japonicus HOM05D002282 ORTHO05D002403 3.1e-34 149.8 136 61.8
Zm00001eb294740 Zea mays HOM05D002282 ORTHO05D002403 3.1e-34 149.8 235 42.6
SHI18081 Sapria himalayana HOM05D002282 ORTHO05D002403 2.6e-33 146.7 242 43.8
Sc12g0008870 Simmondsia chinensis HOM05D002282 ORTHO05D002403 4.4e-33 146.0 177 50.3
HPP92_021532 Vanilla planifolia HOM05D002282 ORTHO05D002403 2.2e-32 143.7 219 42.9
HPP92_021486 Vanilla planifolia HOM05D002282 ORTHO05D002403 1.1e-31 141.4 209 42.6
FAN21G1567 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.4e-31 141.0 199 48.2
MD14G1090800 Malus domestica HOM05D002282 ORTHO05D002403 3.5e-30 136.3 234 42.7
BraA09t41511Z Brassica rapa HOM05D002282 ORTHO05D002403 3.9e-29 132.9 93 80.6
unitig_747.g21506 Utricularia gibba HOM05D002282 ORTHO05D002403 1.5e-28 131.0 194 43.3
HanXRQChr00c0540g0575621 Helianthus annuus HOM05D002282 ORTHO05D002403 3.3e-28 129.8 126 58.7
Ca_20422_v3 Cicer arietinum L. HOM05D002282 ORTHO05D002403 1.5e-25 120.9 221 40.7
FvH4_3g44480 Fragaria vesca HOM05D002282 ORTHO05D002403 5.5e-23 112.5 136 48.5
Manes.04G116700 Manihot esculenta HOM05D002282 ORTHO05D002403 3.5e-22 109.8 144 50.7
Glyma.15G010600 Glycine max HOM05D002282 ORTHO05D002403 3.3e-20 103.2 106 52.8
MD12G1094900 Malus domestica HOM05D002282 ORTHO05D002403 5.8e-17 92.4 138 42.0
Pp3c7_70 Physcomitrium patens HOM05D002282 ORTHO05D002403 1.1e-15 88.2 219 32.4
HanXRQChr04g0097171 Helianthus annuus HOM05D004669 ORTHO05D005767 7.1e-15 85.5 66 63.6
SEGI_26113 Sequoiadendron giganteum HOM05D002282 ORTHO05D002403 1.6e-14 84.3 192 38.0
AagrBONN_evm.TU.Sc2ySwM_362.229 Anthoceros agrestis HOM05D002282 ORTHO05D002403 3.5e-14 83.2 185 33.0
Mapoly0078s0006 Marchantia polymorpha HOM05D002282 ORTHO05D002403 3.5e-14 83.2 234 30.8
CDE06G0942 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 2.8e-11 73.6 98 49.0
Glyma.14G118600 Glycine max HOM05D002282 ORTHO05D002403 2.2e-08 63.9 64 53.1
CBR_g57080 Chara braunii HOM05D002282 ORTHO05D002403 1.2e-06 58.2 238 26.1
Cre12.g538500 Chlamydomonas reinhardtii HOM05D002282 ORTHO05D002403 2.1e-06 57.4 152 31.6
Cc03_g01330 Coffea canephora HOM05D002282 ORTHO05D002403 2.1e-06 57.4 116 28.4


User provided reference genes

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