Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 9.1e-187 656.8 330 100.0
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 2.0e-165 585.9 330 89.1
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 1.1e-163 580.1 329 87.5
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 5.4e-163 577.8 329 87.2
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 1.6e-162 576.2 329 90.0
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 9.5e-160 567.0 329 88.1
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 9.5e-160 567.0 329 88.1
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 1.2e-157 560.1 329 87.5
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 1.5e-157 559.7 329 84.2
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 7.5e-157 557.4 329 87.2
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 2.4e-126 456.1 326 70.9
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 1.2e-114 417.2 240 85.8
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 5.1e-105 385.2 301 62.8
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 5.1e-105 385.2 310 62.6
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 8.7e-105 384.4 310 62.6
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 2.5e-104 382.9 307 63.5
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 3.3e-104 382.5 308 63.3
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.6e-103 380.2 319 59.9
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 2.1e-103 379.8 328 59.1
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 2.4e-102 376.3 293 64.5
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 3.1e-102 375.9 300 64.3
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 3.1e-102 375.9 303 62.4
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 1.3e-100 370.5 308 63.0
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 2.9e-100 369.4 318 58.8
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 2.9e-100 369.4 303 61.7
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 6.5e-100 368.2 308 62.3
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 8.4e-100 367.9 312 60.3
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 7.1e-99 364.8 309 58.9
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 1.2e-98 364.0 307 59.9
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 1.2e-98 364.0 303 61.1
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 2.1e-98 363.2 301 60.5
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 2.1e-98 363.2 303 58.7
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 4.6e-98 362.1 311 59.2
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 6.0e-98 361.7 303 59.7
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 7.9e-98 361.3 310 58.4
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 7.9e-98 361.3 253 68.0
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 1.0e-97 360.9 291 62.5
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 1.3e-97 360.5 310 58.1
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 5.1e-97 358.6 294 57.8
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 5.1e-97 358.6 311 58.8
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 8.7e-97 357.8 313 57.5
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 1.1e-96 357.5 328 56.7
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 3.3e-96 355.9 317 58.4
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 4.3e-96 355.5 317 58.4
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 5.7e-96 355.1 303 59.1
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 2.8e-95 352.8 303 58.4
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 4.8e-95 352.1 301 56.5
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 4.8e-95 352.1 303 59.4
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 8.2e-95 351.3 309 57.0
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 1.1e-94 350.9 309 57.6
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.4e-94 349.7 312 58.3
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 3.1e-94 349.4 309 57.6
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 3.1e-94 349.4 302 60.3
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 4.0e-94 349.0 313 56.2
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 4.0e-94 349.0 247 66.0
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 6.9e-94 348.2 301 56.1
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 9.0e-94 347.8 327 56.6
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 9.0e-94 347.8 325 56.9
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 9.0e-94 347.8 302 58.3
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 2.6e-93 346.3 312 58.0
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 4.5e-93 345.5 301 54.5
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 5.8e-93 345.1 311 58.2
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 3.8e-92 342.4 318 55.3
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 8.4e-92 341.3 303 57.4
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 8.4e-92 341.3 303 57.4
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 1.1e-91 340.9 301 58.5
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 1.4e-91 340.5 332 53.6
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.9e-91 340.1 283 60.1
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 7.1e-91 338.2 298 58.1
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 7.1e-91 338.2 308 54.9
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 7.1e-91 338.2 292 59.6
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 1.2e-90 337.4 254 62.6
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 1.6e-90 337.0 292 58.2
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 3.5e-90 335.9 308 56.5
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.8e-89 333.6 283 59.0
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.9e-88 330.1 283 58.0
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 1.9e-88 330.1 321 52.0
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 4.3e-88 328.9 320 50.9
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 5.7e-88 328.6 321 53.9
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.6e-87 327.0 328 52.4
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 6.3e-87 325.1 292 56.8
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 6.3e-87 325.1 314 51.6
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 1.1e-86 324.3 306 55.6
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.4e-86 323.9 302 56.0
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 3.1e-86 322.8 292 55.8
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 4.1e-86 322.4 308 52.9
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 9.0e-86 321.2 304 57.2
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 9.0e-86 321.2 304 57.2
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 2.6e-85 319.7 324 53.4
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 5.9e-85 318.5 335 51.3
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 5.0e-84 315.5 318 51.9
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 6.5e-84 315.1 328 51.5
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 1.4e-83 313.9 308 56.5
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 3.2e-83 312.8 308 50.6
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.2e-83 312.4 308 51.0
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 4.2e-83 312.4 282 58.5
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 5.5e-83 312.0 308 51.3
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 5.5e-83 312.0 324 51.9
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 9.4e-83 311.2 310 52.6
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 3.6e-82 309.3 320 50.3
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 6.1e-82 308.5 279 58.1
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 6.1e-82 308.5 251 60.2
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 2.3e-81 306.6 251 57.4
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 2.3e-81 306.6 298 53.4
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 2.5e-80 303.1 320 50.9
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 3.3e-80 302.8 297 53.2
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.8e-79 299.7 307 48.9
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 8.2e-79 298.1 309 51.1
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 8.2e-79 298.1 332 51.2
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.1e-78 297.7 307 48.9
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.1e-78 297.7 307 48.9
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 1.1e-78 297.7 328 47.9
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 4.1e-78 295.8 330 48.2
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 6.9e-78 295.0 311 50.5
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 6.9e-78 295.0 337 46.3
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 9.1e-78 294.7 326 46.3
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.2e-77 294.3 330 47.9
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.5e-77 293.9 329 48.3
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 1.5e-77 293.9 315 49.8
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 3.4e-77 292.7 267 53.6
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 5.9e-77 292.0 291 49.8
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 7.7e-77 291.6 268 53.7
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 7.7e-77 291.6 317 47.3
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.2e-76 290.0 294 50.0
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 2.9e-76 289.7 303 50.2
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 3.8e-76 289.3 253 54.9
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 3.8e-76 289.3 288 51.0
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 8.5e-76 288.1 328 47.3
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 1.4e-75 287.3 256 53.9
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 4.2e-75 285.8 331 46.2
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 1.2e-74 284.3 327 45.3
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.1e-74 283.5 347 46.4
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 3.6e-74 282.7 322 46.0
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 4.7e-74 282.3 281 50.2
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 7.9e-74 281.6 318 46.5
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 7.9e-74 281.6 328 45.4
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 1.0e-73 281.2 318 46.9
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 1.4e-73 280.8 322 46.0
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 1.4e-73 280.8 328 45.1
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 1.8e-73 280.4 284 52.5
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 2.3e-73 280.0 258 50.8
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 3.0e-73 279.6 311 48.2
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 9.7e-72 274.6 291 50.5
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 3.7e-71 272.7 253 53.0
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 2.4e-70 270.0 306 47.7
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 2.0e-69 266.9 300 48.0
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 2.6e-69 266.5 261 52.9
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 2.9e-68 263.1 298 46.3
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 1.8e-65 253.8 273 45.4
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 1.5e-64 250.8 250 48.4
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 3.1e-62 243.0 308 43.2
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 5.9e-61 238.8 157 68.8
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 5.9e-61 238.8 275 45.8
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 6.1e-58 228.8 157 65.6
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 8.8e-57 224.9 229 50.7
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 4.4e-56 222.6 198 52.5
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 8.5e-52 208.4 194 53.6
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.8e-49 200.7 150 62.7
Gohir.D10G075401 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.3e-49 200.3 149 65.8
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 2.0e-48 197.2 235 46.8
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 5.9e-45 185.7 245 42.4
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 2.9e-44 183.3 288 41.7
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 1.2e-42 177.9 186 47.8
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 5.7e-40 169.1 216 43.1
CARHR015950 Cardamine hirsuta HOM05D003948 ORTHO05D004610 2.9e-39 166.8 89 93.3
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 1.6e-37 161.0 265 34.0
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 6.6e-36 155.6 202 43.1
Lj5A69T36 Lonicera japonica HOM05D003948 ORTHO05D004610 1.5e-32 144.4 128 62.5
FAN26G3201 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.1e-25 120.2 76 72.4
Lj1g0003343 Lotus japonicus HOM05D003948 ORTHO05D004610 4.0e-25 119.8 92 65.2
Oeu041220.1 Olea europaea HOM05D003948 ORTHO05D004610 4.1e-22 109.8 77 62.3
Peaxi162Scf00274g00858 Petunia axillaris HOM05D003948 ORTHO05D004610 1.3e-20 104.8 77 66.2
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 1.6e-18 97.8 119 38.7
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 8.9e-17 92.0 83 54.2
ClCG09G013940 Citrullus lanatus HOM05D003948 ORTHO05D004610 7.3e-11 72.4 56 55.4


User provided reference genes

Program Settings