Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g13650 Schrenkiella parvula HOM05D005464 ORTHO05D006803 1.0e-196 689.9 355 100.0
BcaC05g25470 Brassica carinata HOM05D005464 ORTHO05D006803 2.3e-175 619.0 356 90.7
A06p11340 Brassica napus HOM05D005464 ORTHO05D006803 9.5e-174 613.6 356 88.5
BraA06t24313Z Brassica rapa HOM05D005464 ORTHO05D006803 2.1e-173 612.5 356 88.2
AT1G15330 Arabidopsis thaliana HOM05D005464 ORTHO05D006803 5.2e-172 607.8 353 87.5
AL1G27420 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 4.4e-171 604.7 353 87.8
Thhalv10008048m.g Eutrema salsugineum HOM05D005464 ORTHO05D006803 4.4e-171 604.7 355 87.6
BolC5t30083H Brassica oleracea HOM05D005464 ORTHO05D006803 7.8e-168 594.0 356 86.2
CARHR015860 Cardamine hirsuta HOM05D005464 ORTHO05D006803 1.0e-167 593.6 355 85.9
C05p13460 Brassica napus HOM05D005464 ORTHO05D006803 3.9e-167 591.7 356 86.0
Carub.0001s1508 Capsella rubella HOM05D005464 ORTHO05D006803 1.6e-165 586.3 355 85.6
Aa31LG7G100 Aethionema arabicum HOM05D005464 ORTHO05D006803 1.6e-149 533.1 363 77.4
THA.LOC104812511 Tarenaya hassleriana HOM05D005464 ORTHO05D006803 5.6e-126 454.9 366 65.6
Cfa001959 Carpinus fangiana HOM05D005464 ORTHO05D006803 9.3e-121 437.6 361 64.5
Atru.chr1.2934 Acer truncatum HOM05D005464 ORTHO05D006803 9.0e-116 421.0 378 59.5
CANSAT56G0380 Cannabis sativa HOM05D005464 ORTHO05D006803 9.0e-116 421.0 364 62.1
Manes.11G057000 Manihot esculenta HOM05D005464 ORTHO05D006803 1.5e-115 420.2 365 60.3
RcHm_v2.0_Chr2g0135251 Rosa chinensis HOM05D005464 ORTHO05D006803 5.8e-115 418.3 380 58.4
Lalb_Chr14g0373811 Lupinus albus HOM05D005464 ORTHO05D006803 2.9e-114 416.0 376 58.8
TWI12G0099 Tripterygium wilfordii HOM05D005464 ORTHO05D006803 4.9e-114 415.2 358 59.2
Lsat_1_v5_gn_4_89921 Lactuca sativa HOM05D005464 ORTHO05D006803 2.5e-113 412.9 353 60.6
THA.LOC104812509 Tarenaya hassleriana HOM05D005464 ORTHO05D006803 9.3e-113 411.0 356 61.2
Cpa.g.sc10.270 Carica papaya HOM05D005464 ORTHO05D006803 1.2e-112 410.6 368 60.3
FvH4_6g29660 Fragaria vesca HOM05D005464 ORTHO05D006803 1.2e-112 410.6 367 58.6
Prupe.3G087600 Prunus persica HOM05D005464 ORTHO05D006803 2.1e-112 409.8 370 59.2
Haze_16562 Corylus avellana HOM05D005464 ORTHO05D006803 1.3e-111 407.1 376 58.8
FAN05G5161 Fragaria x ananassa HOM05D005464 ORTHO05D006803 1.8e-111 406.8 367 58.3
MD17G1212300 Malus domestica HOM05D005464 ORTHO05D006803 1.8e-111 406.8 374 58.3
COL.COLO4_11947 Corchorus olitorius HOM05D005464 ORTHO05D006803 3.9e-111 405.6 355 60.8
Psat5g302720 Pisum sativum HOM05D005464 ORTHO05D006803 6.7e-111 404.8 373 57.4
VMungo1080G0510 Vigna mungo HOM05D005464 ORTHO05D006803 8.7e-111 404.4 361 59.0
PGR031G2541 Punica granatum HOM05D005464 ORTHO05D006803 1.1e-110 404.1 368 58.2
Eucgr.J03066 Eucalyptus grandis HOM05D005464 ORTHO05D006803 1.5e-110 403.7 353 61.2
Lj3g0027830 Lotus japonicus HOM05D005464 ORTHO05D006803 1.9e-110 403.3 375 57.9
Medtr2g103910 Medicago truncatula HOM05D005464 ORTHO05D006803 2.5e-110 402.9 355 58.6
Phvul.005G178300 Phaseolus vulgaris HOM05D005464 ORTHO05D006803 3.3e-110 402.5 361 59.6
FAN09G2673 Fragaria x ananassa HOM05D005464 ORTHO05D006803 4.3e-110 402.1 377 56.8
Sed0012798 Sechium edule HOM05D005464 ORTHO05D006803 4.3e-110 402.1 365 57.3
ECA232G3027 Erigeron canadensis HOM05D005464 ORTHO05D006803 7.4e-110 401.4 369 56.1
Thecc.06G025100 Theobroma cacao HOM05D000467 ORTHO05D000379 7.4e-110 401.4 370 57.8
Gorai.009G128200 Gossypium raimondii HOM05D005464 ORTHO05D006803 9.7e-110 401.0 376 58.2
Actinidia15983 Actinidia chinensis HOM05D005464 ORTHO05D006803 1.6e-109 400.2 364 58.0
GSVIVG01017342001 Vitis vinifera HOM05D005464 ORTHO05D006803 1.6e-109 400.2 346 60.1
CiPaw.02G157400 Carya illinoinensis HOM05D005464 ORTHO05D006803 3.7e-109 399.1 330 64.8
Lalb_Chr22g0350841 Lupinus albus HOM05D005464 ORTHO05D006803 3.7e-109 399.1 362 56.6
TPR.G37199 Trifolium pratense HOM05D005464 ORTHO05D006803 3.7e-109 399.1 388 55.7
Glyma.15G007300 Glycine max HOM05D005464 ORTHO05D006803 8.2e-109 397.9 354 58.8
Gohir.A05G123300 Gossypium hirsutum HOM05D005464 ORTHO05D006803 8.2e-109 397.9 375 57.6
Glyma.13G365800 Glycine max HOM05D005464 ORTHO05D006803 3.1e-108 396.0 369 57.5
FAN14G5059 Fragaria x ananassa HOM05D005464 ORTHO05D006803 4.5e-107 392.1 408 52.9
Ca_01055_v3 Cicer arietinum L. HOM05D005464 ORTHO05D006803 1.3e-106 390.6 367 56.1
Solyc06g068160.3 Solanum lycopersicum HOM05D005464 ORTHO05D006803 2.9e-106 389.4 356 57.0
HanXRQChr16g0500301 Helianthus annuus HOM05D005464 ORTHO05D006803 1.1e-105 387.5 346 57.2
Gohir.D05G124200 Gossypium hirsutum HOM05D005464 ORTHO05D006803 1.4e-105 387.1 375 56.8
Sopen06g025430 Solanum pennellii HOM05D005464 ORTHO05D006803 2.5e-105 386.3 356 56.7
Nitab4.5_0006769g0010 Nicotiana tabacum HOM05D005464 ORTHO05D006803 7.2e-105 384.8 362 56.9
ClCG07G012450 Citrullus lanatus HOM05D005464 ORTHO05D006803 9.4e-105 384.4 371 56.1
PSO017G6540 Papaver somniferum HOM05D005464 ORTHO05D006803 1.6e-104 383.6 356 56.7
Rhsim12G0191100 Rhododendron simsii HOM05D005464 ORTHO05D006803 2.1e-104 383.3 347 58.8
Nitab4.5_0000373g0080 Nicotiana tabacum HOM05D005464 ORTHO05D006803 3.6e-104 382.5 359 56.8
DCAR_021346 Daucus carota HOM05D005464 ORTHO05D006803 4.6e-104 382.1 369 54.7
Nn8g39510 Nelumbo nucifera HOM05D005464 ORTHO05D006803 6.1e-104 381.7 347 58.5
PGSC0003DMG400028509 Solanum tuberosum HOM05D005464 ORTHO05D006803 6.1e-104 381.7 354 56.5
MSTRG.22747 Avicennia marina HOM05D005464 ORTHO05D006803 7.9e-104 381.3 350 57.4
PSO170G0224 Papaver somniferum HOM05D005464 ORTHO05D006803 7.9e-104 381.3 358 55.6
Aqoxy7G02293 Aquilegia oxysepala HOM05D005464 ORTHO05D006803 3.0e-103 379.4 367 54.8
AUR62016335 Chenopodium quinoa HOM05D005464 ORTHO05D006803 3.0e-103 379.4 352 54.8
Migut.I00762 Erythranthe guttata HOM05D005464 ORTHO05D006803 6.7e-103 378.3 359 55.4
CsaV3_4G001710 Cucumis sativus L. HOM05D005464 ORTHO05D006803 2.0e-102 376.7 353 57.5
SGA_v2.0_scaffold5G02698 Striga asiatica HOM05D005464 ORTHO05D006803 4.3e-102 375.6 353 56.1
CAN.G1503.8 Capsicum annuum HOM05D005464 ORTHO05D006803 7.4e-102 374.8 363 54.5
Eucgr.F03878 Eucalyptus grandis HOM05D005464 ORTHO05D006803 4.8e-101 372.1 369 55.8
Hund06557 Selenicereus undatus HOM05D005464 ORTHO05D006803 4.8e-101 372.1 350 54.6
BcaC08g47570 Brassica carinata HOM05D005464 ORTHO05D006803 3.1e-100 369.4 365 54.8
C06p54250 Brassica napus HOM05D005464 ORTHO05D006803 3.1e-100 369.4 365 54.8
BolC6t40438H Brassica oleracea HOM05D005464 ORTHO05D006803 3.1e-100 369.4 365 54.8
BcaB02g08721 Brassica carinata HOM05D005464 ORTHO05D006803 4.1e-100 369.0 357 54.9
EL10Ac9g21898 Beta vulgaris HOM05D005464 ORTHO05D006803 1.2e-99 367.5 352 54.8
PGR102G0885 Punica granatum HOM05D005464 ORTHO05D006803 1.2e-99 367.5 352 56.0
AT1G80090 Arabidopsis thaliana HOM05D005464 ORTHO05D006803 3.4e-99 365.9 357 54.6
unitig_0.g1114 Utricularia gibba HOM05D005464 ORTHO05D006803 3.4e-99 365.9 358 54.5
MELO3C017863.2 Cucumis melo HOM05D005464 ORTHO05D006803 1.0e-98 364.4 353 56.9
MBI14_g16402_MAGBIO Magnolia biondii HOM05D005464 ORTHO05D006803 2.9e-98 362.8 362 54.4
AUR62011516 Chenopodium quinoa HOM05D005464 ORTHO05D006803 1.9e-97 360.1 330 55.5
Thhalv10019455m.g Eutrema salsugineum HOM05D005464 ORTHO05D006803 1.9e-97 360.1 354 54.0
A07p45420 Brassica napus HOM05D005464 ORTHO05D006803 5.5e-97 358.6 365 52.9
Peaxi162Scf00207g00638 Petunia axillaris HOM05D005464 ORTHO05D006803 5.1e-95 352.1 345 55.4
vmacro16896 Vaccinium macrocarpon HOM05D005464 ORTHO05D006803 8.8e-95 351.3 376 51.9
Dinv30606 Davidia involucrata HOM05D005464 ORTHO05D006803 1.1e-94 350.9 362 53.3
SHI11227 Sapria himalayana HOM05D005464 ORTHO05D006803 8.2e-93 344.7 342 55.3
Zm00001eb232620 Zea mays HOM05D005464 ORTHO05D006803 1.8e-92 343.6 376 51.1
arahy.Tifrunner.gnm1.ann1.JVJR89 Arachis hypogaea HOM05D005464 ORTHO05D006803 2.4e-92 343.2 361 53.5
arahy.Tifrunner.gnm1.ann1.Y6ZEHB Arachis hypogaea HOM05D005464 ORTHO05D006803 2.4e-92 343.2 361 53.5
CARHR074410 Cardamine hirsuta HOM05D005464 ORTHO05D006803 5.3e-92 342.0 320 55.9
Sp5g35710 Schrenkiella parvula HOM05D005464 ORTHO05D006803 2.0e-91 340.1 320 55.3
Os02g0158900 Oryza sativa ssp. japonica HOM05D005464 ORTHO05D006803 3.5e-91 339.3 363 52.3
HPP92_016981 Vanilla planifolia HOM05D005464 ORTHO05D006803 8.5e-90 334.7 338 53.8
ATR0800G035 Amborella trichopoda HOM05D005464 ORTHO05D006803 8.8e-87 324.7 360 48.1
BraA07t32046Z Brassica rapa HOM05D005464 ORTHO05D006803 4.4e-86 322.4 365 49.9
Duzib160G0683 Durio zibethinus HOM05D005464 ORTHO05D006803 8.2e-85 318.2 305 57.0
Carub.0002s2743 Capsella rubella HOM05D005464 ORTHO05D006803 1.7e-82 310.5 297 55.2
Ciclev10026304m.g Citrus clementina HOM05D005464 ORTHO05D006803 5.0e-82 308.9 247 65.6
SMO201G0050 Selaginella moellendorffii HOM05D005464 ORTHO05D006803 6.5e-74 282.0 363 44.1
Mapoly0007s0086 Marchantia polymorpha HOM05D005464 ORTHO05D006803 8.5e-74 281.6 368 42.7
Aa31LG4G370 Aethionema arabicum HOM05D005464 ORTHO05D006803 1.6e-72 277.3 297 49.8
BcaC05g25495 Brassica carinata HOM05D005464 ORTHO05D006803 2.0e-70 270.4 172 82.0
Pp3c3_23830 Physcomitrium patens HOM05D005464 ORTHO05D006803 9.1e-68 261.5 349 43.0
Oeu045134.1 Olea europaea HOM05D005464 ORTHO05D006803 6.8e-63 245.4 250 52.8
QL05p029765 Quercus lobata HOM05D005464 ORTHO05D006803 2.6e-62 243.4 225 58.2
QL05p030112 Quercus lobata HOM05D005464 ORTHO05D006803 2.6e-62 243.4 225 58.2
AagrBONN_evm.TU.Sc2ySwM_368.1642 Anthoceros agrestis HOM05D005464 ORTHO05D006803 1.5e-57 227.6 355 37.7
Lj9P500T36 Lonicera japonica HOM05D005464 ORTHO05D006803 1.9e-57 227.3 213 56.3
Atru.chr1.2936 Acer truncatum HOM05D005464 ORTHO05D006803 2.9e-53 213.4 226 54.4
Nn2g12091 Nelumbo nucifera HOM05D000467 ORTHO05D000379 8.3e-53 211.8 234 49.6
PGR102G1999 Punica granatum HOM05D005464 ORTHO05D006803 1.4e-52 211.1 297 44.1
AagrBONN_evm.TU.Sc2ySwM_344.2189 Anthoceros agrestis HOM05D005464 ORTHO05D006803 3.6e-48 196.4 218 49.1
Sc06g0005900 Simmondsia chinensis HOM05D005464 ORTHO05D006803 3.7e-45 186.4 135 67.4
TAR383G0924 Trochodendron aralioides HOM05D005464 ORTHO05D006803 9.2e-44 181.8 128 71.1
Sc06g0005910 Simmondsia chinensis HOM05D005464 ORTHO05D006803 1.0e-42 178.3 213 44.1
CSS0011845 Camellia sinensis var. sinensis HOM05D005464 ORTHO05D006803 1.5e-41 174.5 132 65.9
CSS0036664 Camellia sinensis var. sinensis HOM05D005464 ORTHO05D006803 4.3e-41 172.9 132 65.2
HPP92_010901 Vanilla planifolia HOM05D005464 ORTHO05D006803 1.8e-39 167.5 225 42.7
VMungo1127G1748 Vigna mungo HOM05D005464 ORTHO05D006803 6.8e-39 165.6 200 47.5
Hma1.2p1_1144F.1_g261310 Hydrangea macrophylla HOM05D005464 ORTHO05D006803 1.2e-38 164.9 212 46.7
CBR_g24374 Chara braunii HOM05D005464 ORTHO05D006803 2.0e-38 164.1 325 34.8
Cc04_g04410 Coffea canephora HOM05D005464 ORTHO05D006803 7.6e-38 162.2 282 38.3
AL2G41450 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 2.4e-36 157.1 137 58.4
Pp3c13_16980 Physcomitrium patens HOM05D005464 ORTHO05D006803 3.4e-30 136.7 234 37.2
Psat1g035880 Pisum sativum HOM05D005464 ORTHO05D006803 1.7e-26 124.4 100 64.0
SEGI_27934 Sequoiadendron giganteum HOM05D005464 ORTHO05D006803 8.1e-24 115.5 275 29.8
AL2G41440 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 5.3e-23 112.8 129 48.1
TAR383G0332 Trochodendron aralioides HOM05D005464 ORTHO05D006803 3.8e-21 106.7 101 49.5
Psat6g000160 Pisum sativum HOM05D005464 ORTHO05D006803 6.4e-21 105.9 134 46.3
CBR_g38673 Chara braunii HOM05D005464 ORTHO05D006803 5.6e-17 92.8 246 29.7
QL05p030118 Quercus lobata HOM05D005464 ORTHO05D006803 1.3e-16 91.7 129 45.0
QL05p029759 Quercus lobata HOM05D005464 ORTHO05D006803 1.6e-16 91.3 129 45.0
SEGI_39315 Sequoiadendron giganteum HOM05D005464 ORTHO05D006803 3.4e-14 83.6 112 44.6
Duzib128G0943 Durio zibethinus HOM05D005426 ORTHO05D006996 9.6e-09 65.5 286 25.9
TPR.G36847 Trifolium pratense HOM05D002177 ORTHO05D002257 2.8e-08 63.9 401 23.2
Thecc.05G201400 Theobroma cacao HOM05D005426 ORTHO05D006996 3.7e-08 63.5 286 25.9
Duzib177G1068 Durio zibethinus HOM05D005426 ORTHO05D006996 4.8e-08 63.2 285 26.0
TWI38G1374 Tripterygium wilfordii HOM05D002177 ORTHO05D002257 4.8e-08 63.2 400 21.5
Nn1g00750 Nelumbo nucifera HOM05D005464 ORTHO05D006803 1.1e-07 62.0 73 46.6
Haze_04540 Corylus avellana HOM05D005426 ORTHO05D006996 6.9e-07 59.3 293 24.2
FvH4_4g31760 Fragaria vesca HOM05D001741 ORTHO05D002196 9.0e-07 58.9 156 26.9
FAN12G1673 Fragaria x ananassa HOM05D001741 ORTHO05D002196 9.0e-07 58.9 156 26.9
Medtr2g103890 Medicago truncatula HOM05D005464 ORTHO05D006803 9.0e-07 58.9 74 44.6
Actinidia06809 Actinidia chinensis HOM05D005426 ORTHO05D006996 1.2e-06 58.5 285 26.3
Actinidia03832 Actinidia chinensis HOM05D005426 ORTHO05D006996 1.5e-06 58.2 284 26.1
Glyma.01G043400 Glycine max HOM05D001741 ORTHO05D002196 1.5e-06 58.2 157 24.8
Gorai.013G180000 Gossypium raimondii HOM05D005426 ORTHO05D006996 2.6e-06 57.4 286 24.8
PGSC0003DMG400010533 Solanum tuberosum HOM05D005426 ORTHO05D006996 2.6e-06 57.4 282 24.5
Medtr2g013110 Medicago truncatula HOM05D002177 ORTHO05D002257 3.4e-06 57.0 330 21.2
Solyc04g056630.3 Solanum lycopersicum HOM05D005426 ORTHO05D006996 3.4e-06 57.0 282 24.5
Gohir.A13G154600 Gossypium hirsutum HOM05D005426 ORTHO05D006996 4.5e-06 56.6 226 25.2
Gohir.D13G159300 Gossypium hirsutum HOM05D005426 ORTHO05D006996 4.5e-06 56.6 286 24.8
Phvul.006G187300 Phaseolus vulgaris HOM05D002177 ORTHO05D002257 4.5e-06 56.6 322 23.3
RcHm_v2.0_Chr4g0440361 Rosa chinensis HOM05D001741 ORTHO05D002196 4.5e-06 56.6 156 25.6
Sopen04g025550 Solanum pennellii HOM05D005426 ORTHO05D006996 4.5e-06 56.6 282 24.5
VMungo0540G1971 Vigna mungo HOM05D002177 ORTHO05D002257 4.5e-06 56.6 213 25.4
MBI01_g12908_MAGBIO Magnolia biondii HOM05D001741 ORTHO05D002196 5.8e-06 56.2 159 27.0
Mapoly0030s0135 Marchantia polymorpha HOM05D005426 ORTHO05D006996 5.8e-06 56.2 395 22.8
Hma1.2p1_0090F.1_g046010 Hydrangea macrophylla HOM05D005464 ORTHO05D048341 7.6e-06 55.8 28 82.1
Hma1.2p1_0090F.1_g046015 Hydrangea macrophylla HOM05D005464 ORTHO05D048341 7.6e-06 55.8 28 82.1
RcHm_v2.0_Chr4g0440371 Rosa chinensis HOM05D001741 ORTHO05D002196 7.6e-06 55.8 157 26.8
arahy.Tifrunner.gnm1.ann1.HN3KPZ Arachis hypogaea HOM05D002177 ORTHO05D002257 1.0e-05 55.5 165 26.7
FAN17G1528 Fragaria x ananassa HOM05D001741 ORTHO05D002196 1.0e-05 55.5 156 26.3


User provided reference genes

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