Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g13550 Schrenkiella parvula HOM05D006672 ORTHO05D007769 1.2e-86 323.2 166 100.0
Thhalv10008936m.g Eutrema salsugineum HOM05D006672 ORTHO05D007769 3.2e-63 245.4 169 80.5
BcaC05g25452 Brassica carinata HOM05D006672 ORTHO05D007769 3.6e-59 231.9 169 75.7
C05p13360 Brassica napus HOM05D006672 ORTHO05D007769 3.6e-59 231.9 169 75.7
BolC5t30073H Brassica oleracea HOM05D006672 ORTHO05D007769 8.1e-59 230.7 171 76.0
BcaB03g13070 Brassica carinata HOM05D005761 ORTHO05D007286 1.2e-57 226.9 166 74.7
A06p11230 Brassica napus HOM05D006672 ORTHO05D007769 5.8e-57 224.6 169 74.0
BraA06t24303Z Brassica rapa HOM05D006672 ORTHO05D007769 4.9e-56 221.5 169 74.6
CARHR015760 Cardamine hirsuta HOM05D006672 ORTHO05D007769 1.2e-54 216.9 169 72.2
AL1G27320 Arabidopsis lyrata HOM05D006672 ORTHO05D007769 6.0e-54 214.5 169 73.4
AT1G15230 Arabidopsis thaliana HOM05D006672 ORTHO05D007769 5.1e-53 211.5 169 74.6
Carub.0001s1499 Capsella rubella HOM05D006672 ORTHO05D007769 1.6e-51 206.5 169 72.8
BcaC05g25464 Brassica carinata HOM05D006672 ORTHO05D007769 9.0e-50 200.7 170 68.8
THA.LOC104800426 Tarenaya hassleriana HOM05D006672 ORTHO05D007769 4.5e-41 171.8 175 59.4
BcaC05g25462 Brassica carinata HOM05D006672 ORTHO05D007769 2.9e-40 169.1 170 62.9
Potri.003G053500 Populus trichocarpa HOM05D006672 ORTHO05D007769 2.1e-27 126.3 178 45.5
Aa31LG7G40 Aethionema arabicum HOM05D006672 ORTHO05D007769 1.8e-26 123.2 154 52.6
Phvul.010G149100 Phaseolus vulgaris HOM05D006672 ORTHO05D007769 9.0e-26 120.9 182 45.1
Gorai.009G134300 Gossypium raimondii HOM05D006672 ORTHO05D007769 2.2e-24 116.3 190 46.8
COL.COLO4_30405 Corchorus olitorius HOM05D006672 ORTHO05D007769 5.0e-24 115.2 180 47.2
Glyma.08G205200 Glycine max HOM05D006672 ORTHO05D007769 5.0e-24 115.2 178 46.6
Gohir.D05G130600 Gossypium hirsutum HOM05D006672 ORTHO05D007769 8.4e-24 114.4 190 46.3
Ah.01g021520 Amaranthus hybridus HOM05D006672 ORTHO05D007769 1.1e-23 114.0 183 43.7
CiPaw.02G149600 Carya illinoinensis HOM05D006672 ORTHO05D007769 1.9e-23 113.2 195 43.6
FAN14G5379 Fragaria x ananassa HOM05D006672 ORTHO05D007769 4.2e-23 112.1 176 47.2
Cfa009362 Carpinus fangiana HOM05D006672 ORTHO05D007769 5.5e-23 111.7 188 42.0
Gohir.A05G131200 Gossypium hirsutum HOM05D006672 ORTHO05D007769 5.5e-23 111.7 193 44.6
Manes.04G128475 Manihot esculenta HOM05D006672 ORTHO05D007769 9.3e-23 110.9 184 46.7
FAN05G5736 Fragaria x ananassa HOM05D006672 ORTHO05D007769 1.6e-22 110.2 180 45.6
FvH4_6g31600 Fragaria vesca HOM05D006672 ORTHO05D007769 2.7e-22 109.4 182 42.3
QL05p022164 Quercus lobata HOM05D006672 ORTHO05D007769 2.7e-22 109.4 191 41.9
TWI75G0771 Tripterygium wilfordii HOM05D006672 ORTHO05D007769 2.7e-22 109.4 176 42.6
TWI12G1441 Tripterygium wilfordii HOM05D006672 ORTHO05D007769 1.0e-21 107.5 184 42.9
Atru.chr1.3318 Acer truncatum HOM05D006672 ORTHO05D007769 1.3e-21 107.1 173 47.4
Prupe.3G068600 Prunus persica HOM05D006672 ORTHO05D007769 2.3e-21 106.3 185 45.4
Actinidia24746 Actinidia chinensis HOM05D006672 ORTHO05D007769 3.9e-21 105.5 171 45.6
RcHm_v2.0_Chr2g0138661 Rosa chinensis HOM05D006672 ORTHO05D007769 5.1e-21 105.1 172 45.3
Ciclev10026595m.g Citrus clementina HOM05D006672 ORTHO05D007769 1.1e-20 104.0 191 41.9
Haze_12408 Corylus avellana HOM05D006672 ORTHO05D007769 1.5e-20 103.6 174 42.5
FAN09G1670 Fragaria x ananassa HOM05D006672 ORTHO05D007769 1.5e-20 103.6 179 42.5
Cc04_g03140 Coffea canephora HOM05D006672 ORTHO05D007769 3.3e-20 102.4 187 42.2
Nitab4.5_0001315g0240 Nicotiana tabacum HOM05D006672 ORTHO05D007769 3.3e-20 102.4 182 40.7
VMungo0331G0342 Vigna mungo HOM05D006672 ORTHO05D007769 3.3e-20 102.4 181 42.0
Rhsim12G0199700 Rhododendron simsii HOM05D006672 ORTHO05D007769 9.7e-20 100.9 182 42.9
Thecc.06G091100 Theobroma cacao HOM05D006672 ORTHO05D007769 9.7e-20 100.9 184 41.8
Sabra03G0029900 Salix brachista HOM05D006672 ORTHO05D007769 1.3e-19 100.5 174 43.7
arahy.Tifrunner.gnm1.ann1.HW7XL7 Arachis hypogaea HOM05D006672 ORTHO05D007769 1.6e-19 100.1 130 51.5
Lj3g0012066 Lotus japonicus HOM05D006672 ORTHO05D007769 1.6e-19 100.1 177 41.2
HanXRQChr10g0313401 Helianthus annuus HOM05D006672 ORTHO05D007769 3.7e-19 99.0 181 45.9
Sopen03g039560 Solanum pennellii HOM05D006672 ORTHO05D007769 8.2e-19 97.8 180 40.6
AUR62016468 Chenopodium quinoa HOM05D006672 ORTHO05D007769 1.1e-18 97.4 124 50.8
arahy.Tifrunner.gnm1.ann1.ZTP7X5 Arachis hypogaea HOM05D006672 ORTHO05D007769 1.4e-18 97.1 122 50.0
Dinv30493 Davidia involucrata HOM05D006672 ORTHO05D007769 1.4e-18 97.1 167 42.5
TPR.G17666 Trifolium pratense HOM05D006672 ORTHO05D007769 1.8e-18 96.7 168 42.9
Migut.D01021 Erythranthe guttata HOM05D006672 ORTHO05D007769 2.4e-18 96.3 185 42.2
Nitab4.5_0008314g0010 Nicotiana tabacum HOM05D006672 ORTHO05D007769 3.1e-18 95.9 188 40.4
Oeu040367.1 Olea europaea HOM05D006672 ORTHO05D007769 3.1e-18 95.9 186 40.3
Solyc03g120740.1 Solanum lycopersicum HOM05D006672 ORTHO05D007769 3.1e-18 95.9 180 41.1
Actinidia08988 Actinidia chinensis HOM05D000726 ORTHO05D007769 5.3e-18 95.1 165 44.8
EL10Ac9g22019 Beta vulgaris HOM05D000202 ORTHO05D000117 9.0e-18 94.4 177 38.4
SGA_v2.0_scaffold4G02004 Striga asiatica HOM05D006672 ORTHO05D007769 2.6e-17 92.8 184 42.9
ECA234G2073 Erigeron canadensis HOM05D006672 ORTHO05D007769 3.4e-17 92.4 180 44.4
arahy.Tifrunner.gnm1.ann1.07RGV5 Arachis hypogaea HOM05D006672 ORTHO05D007769 4.5e-17 92.0 180 43.3
CANSAT56G0062 Cannabis sativa HOM05D006672 ORTHO05D007769 5.9e-17 91.7 176 39.8
Duzib160G0370 Durio zibethinus HOM05D000726 ORTHO05D007769 5.9e-17 91.7 141 46.1
AUR62011637 Chenopodium quinoa HOM05D006672 ORTHO05D007769 1.0e-16 90.9 151 45.0
Duzib235G0275 Durio zibethinus HOM05D006672 ORTHO05D007769 1.7e-16 90.1 91 57.1
arahy.Tifrunner.gnm1.ann1.N61AC9 Arachis hypogaea HOM05D006672 ORTHO05D007769 2.2e-16 89.7 134 48.5
DCAR_026329 Daucus carota HOM05D006672 ORTHO05D007769 5.0e-16 88.6 171 40.9
Lalb_Chr25g0279941 Lupinus albus HOM05D006672 ORTHO05D007769 5.0e-16 88.6 168 43.5
Lsat_1_v5_gn_2_34400 Lactuca sativa HOM05D008424 ORTHO05D007769 8.5e-16 87.8 188 40.4
MD17G1192500 Malus domestica HOM05D006672 ORTHO05D007769 1.4e-15 87.0 188 41.0
arahy.Tifrunner.gnm1.ann1.C7681Z Arachis hypogaea HOM05D006672 ORTHO05D007769 4.2e-15 85.5 130 46.9
arahy.Tifrunner.gnm1.ann1.MVJ1PZ Arachis hypogaea HOM05D006672 ORTHO05D007769 5.5e-15 85.1 179 40.8
MBI04_g22016_MAGBIO Magnolia biondii HOM05D006672 ORTHO05D007769 5.5e-15 85.1 184 38.6
SalBow1G8254 Salvia bowleyana HOM05D000380 ORTHO05D000561 7.2e-15 84.7 171 42.7
Psat7g250280 Pisum sativum HOM05D006672 ORTHO05D007769 1.6e-14 83.6 166 38.6
PGSC0003DMG400040414 Solanum tuberosum HOM05D006672 ORTHO05D007769 2.7e-14 82.8 189 38.1
MSTRG.22671 Avicennia marina HOM05D006672 ORTHO05D007769 3.6e-14 82.4 193 39.4
ClCG07G013120 Citrullus lanatus HOM05D006672 ORTHO05D007769 3.6e-14 82.4 167 40.1
arahy.Tifrunner.gnm1.ann1.HQ5KA8 Arachis hypogaea HOM05D006672 ORTHO05D007769 4.6e-14 82.0 105 49.5
arahy.Tifrunner.gnm1.ann1.K72DJ3 Arachis hypogaea HOM05D006672 ORTHO05D007769 4.6e-14 82.0 70 67.1
CSS0000508 Camellia sinensis var. sinensis HOM05D006672 ORTHO05D007769 7.9e-14 81.3 155 42.6
Hma1.2p1_2022F.1_g311340 Hydrangea macrophylla HOM05D006672 ORTHO05D007769 7.9e-14 81.3 164 41.5
Medtr0206s0010 Medicago truncatula HOM05D006672 ORTHO05D007769 1.0e-13 80.9 166 38.0
Medtr4g012950 Medicago truncatula HOM05D006672 ORTHO05D007769 1.4e-13 80.5 164 39.0
Ca_20375_v3 Cicer arietinum L. HOM05D006672 ORTHO05D007769 1.8e-13 80.1 162 37.7
MELO3C012968.2 Cucumis melo HOM05D006672 ORTHO05D007769 1.8e-13 80.1 158 42.4
arahy.Tifrunner.gnm1.ann1.QF27IC Arachis hypogaea HOM05D006672 ORTHO05D007769 2.3e-13 79.7 130 44.6
DCAR_022631 Daucus carota HOM05D006672 ORTHO05D007769 5.1e-13 78.6 154 41.6
Lsat_1_v5_gn_5_130661 Lactuca sativa HOM05D006672 ORTHO05D007769 5.1e-13 78.6 164 41.5
Nn8g39154 Nelumbo nucifera HOM05D006672 ORTHO05D007769 6.7e-13 78.2 190 37.9
vmacro16964 Vaccinium macrocarpon HOM05D006672 ORTHO05D007769 2.0e-12 76.6 194 38.7
Sed0005168 Sechium edule HOM05D006672 ORTHO05D007769 2.5e-12 76.3 174 39.1
Aqoxy7G01641 Aquilegia oxysepala HOM05D006672 ORTHO05D007769 5.7e-12 75.1 178 37.1
Lsat_1_v5_gn_5_130760 Lactuca sativa HOM05D006672 ORTHO05D007769 7.4e-12 74.7 126 47.6
Peaxi162Scf00015g00013 Petunia axillaris HOM05D006672 ORTHO05D007769 7.4e-12 74.7 57 66.7
TAR636G2852 Trochodendron aralioides HOM05D006672 ORTHO05D007769 7.4e-12 74.7 183 35.0
CsaV3_3G025030 Cucumis sativus L. HOM05D006672 ORTHO05D007769 8.2e-11 71.2 152 41.4
Rhsim06G0080600 Rhododendron simsii HOM05D006672 ORTHO05D007769 5.3e-10 68.6 72 55.6
unitig_899.g14774 Utricularia gibba HOM05D006672 ORTHO05D007769 9.1e-10 67.8 172 35.5
CSS0037944 Camellia sinensis var. sinensis HOM05D006672 ORTHO05D007769 2.0e-09 66.6 161 37.3
Sc15g0001280 Simmondsia chinensis HOM05D006672 ORTHO05D007769 2.0e-09 66.6 182 33.0
Mapoly0141s0006 Marchantia polymorpha HOM05D006672 ORTHO05D007769 3.4e-09 65.9 170 37.6
Lsat_1_v5_gn_5_130640 Lactuca sativa HOM05D006672 ORTHO05D007769 1.3e-08 63.9 61 62.3
HPP92_005483 Vanilla planifolia HOM05D006672 ORTHO05D007769 6.5e-08 61.6 135 37.0
Zm00001eb098380 Zea mays HOM05D006672 ORTHO05D007769 1.1e-07 60.8 81 48.1
ATR0829G196 Amborella trichopoda HOM05D006672 ORTHO05D007769 1.4e-07 60.5 148 34.5
PSO782G0352 Papaver somniferum HOM05D006672 ORTHO05D007769 1.9e-07 60.1 151 35.8
SEGI_22972 Sequoiadendron giganteum HOM05D006672 ORTHO05D007769 3.2e-07 59.3 177 36.2
arahy.Tifrunner.gnm1.ann1.DAY3RM Arachis hypogaea HOM05D006672 ORTHO05D007769 5.5e-07 58.5 130 39.2
arahy.Tifrunner.gnm1.ann1.XTGM9Z Arachis hypogaea HOM05D006672 ORTHO05D007769 5.5e-07 58.5 117 40.2
Lsat_1_v5_gn_4_162060 Lactuca sativa HOM05D006672 ORTHO05D007769 1.2e-06 57.4 44 72.7
PSO832G0654 Papaver somniferum HOM05D006672 ORTHO05D007769 1.2e-06 57.4 156 31.4
PGR102G0682 Punica granatum HOM05D006672 ORTHO05D007769 1.2e-06 57.4 100 43.0
AagrBONN_evm.TU.Sc2ySwM_362.2137 Anthoceros agrestis HOM05D006672 ORTHO05D007769 2.1e-06 56.6 172 30.8
SGA_v2.0_scaffold5G02564 Striga asiatica HOM05D000085 ORTHO05D000274 2.7e-06 56.2 130 40.8
Atru.chr1.3332 Acer truncatum HOM05D006672 ORTHO05D007769 3.6e-06 55.8 140 39.3
Pp3c1_40010 Physcomitrium patens HOM05D006672 ORTHO05D007769 7.9e-06 54.7 165 32.7


User provided reference genes

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