Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g13480 Schrenkiella parvula HOM05D004215 ORTHO05D005293 7.1e-153 543.9 274 100.0
Thhalv10008333m.g Eutrema salsugineum HOM05D004215 ORTHO05D005293 1.6e-133 479.6 296 84.8
BolC5t30064H Brassica oleracea HOM05D004215 ORTHO05D005293 1.2e-131 473.4 295 84.1
Carub.0001s1491 Capsella rubella HOM05D004215 ORTHO05D005293 5.0e-130 468.0 296 81.8
BraA06t24295Z Brassica rapa HOM05D004215 ORTHO05D005293 2.7e-128 462.2 296 83.1
AL1G27210 Arabidopsis lyrata HOM05D004215 ORTHO05D005293 1.0e-127 460.3 296 80.1
CARHR015680 Cardamine hirsuta HOM05D004215 ORTHO05D005293 1.8e-127 459.5 296 79.4
BcaB03g13074 Brassica carinata HOM05D004215 ORTHO05D005293 6.7e-127 457.6 300 81.0
A08p31720 Brassica napus HOM05D004215 ORTHO05D005293 9.7e-126 453.8 301 79.7
BraA08t35094Z Brassica rapa HOM05D004215 ORTHO05D005293 9.7e-126 453.8 301 79.7
BcaC05g25445 Brassica carinata HOM05D004215 ORTHO05D005293 1.3e-125 453.4 276 85.5
C05p13270 Brassica napus HOM05D004215 ORTHO05D005293 1.3e-125 453.4 276 85.5
BolC8t49328H Brassica oleracea HOM05D004215 ORTHO05D005293 1.7e-125 453.0 304 78.6
BcaC07g38770 Brassica carinata HOM05D004215 ORTHO05D005293 8.2e-125 450.7 307 78.5
C08p17030 Brassica napus HOM05D004215 ORTHO05D005293 8.2e-125 450.7 307 78.5
AT1G15140 Arabidopsis thaliana HOM05D004215 ORTHO05D005293 3.4e-123 445.3 296 78.0
A06p11150 Brassica napus HOM05D004215 ORTHO05D005293 4.2e-121 438.3 276 83.3
Aa31LG1G20 Aethionema arabicum HOM05D004215 ORTHO05D005293 1.8e-119 433.0 300 75.3
THA.LOC104805048 Tarenaya hassleriana HOM05D004215 ORTHO05D005293 5.7e-110 401.4 296 73.0
BcaB02g06582 Brassica carinata HOM05D004215 ORTHO05D005293 7.5e-110 401.0 213 93.9
Manes.14G110200 Manihot esculenta HOM05D004215 ORTHO05D005293 1.4e-103 380.2 305 65.2
Cfa015796 Carpinus fangiana HOM05D004215 ORTHO05D005293 1.8e-103 379.8 294 67.7
Gohir.D05G319000 Gossypium hirsutum HOM05D004215 ORTHO05D005293 1.2e-102 377.1 291 66.7
Gorai.009G341900 Gossypium raimondii HOM05D004215 ORTHO05D005293 1.2e-102 377.1 291 66.7
Ciclev10016124m.g Citrus clementina HOM05D004215 ORTHO05D005293 1.8e-100 369.8 293 64.8
Duzib251G0621 Durio zibethinus HOM05D004215 ORTHO05D005293 3.1e-100 369.0 290 65.9
Eucgr.B02879 Eucalyptus grandis HOM05D004215 ORTHO05D005293 1.6e-99 366.7 294 66.7
Thecc.02G217400 Theobroma cacao HOM05D004215 ORTHO05D005293 3.5e-99 365.5 293 64.8
Potri.010G116500 Populus trichocarpa HOM05D004215 ORTHO05D005293 5.9e-99 364.8 296 64.5
Atru.chr11.354 Acer truncatum HOM05D004215 ORTHO05D005293 3.8e-98 362.1 294 63.3
CiPaw.06G014700 Carya illinoinensis HOM05D004215 ORTHO05D005293 8.6e-98 360.9 295 64.4
RcHm_v2.0_Chr4g0433881 Rosa chinensis HOM05D004215 ORTHO05D005293 1.1e-97 360.5 296 63.9
Sopen05g004280 Solanum pennellii HOM05D004215 ORTHO05D005293 1.1e-97 360.5 292 65.4
COL.COLO4_15325 Corchorus olitorius HOM05D004215 ORTHO05D005293 1.9e-97 359.8 293 64.5
CANSAT01G2004 Cannabis sativa HOM05D004215 ORTHO05D005293 3.2e-97 359.0 289 64.4
Potri.008G126700 Populus trichocarpa HOM05D004215 ORTHO05D005293 3.2e-97 359.0 278 65.8
Solyc05g008450.3 Solanum lycopersicum HOM05D004215 ORTHO05D005293 3.2e-97 359.0 292 65.1
Cpa.g.sc65.98 Carica papaya HOM05D004215 ORTHO05D005293 7.2e-97 357.8 264 68.6
Nitab4.5_0000293g0040 Nicotiana tabacum HOM05D004215 ORTHO05D005293 2.1e-96 356.3 293 64.2
Peaxi162Scf00205g00925 Petunia axillaris HOM05D004215 ORTHO05D005293 2.8e-96 355.9 292 65.8
QL01p002798 Quercus lobata HOM05D004215 ORTHO05D005293 6.1e-96 354.8 332 58.1
PGSC0003DMG400030559 Solanum tuberosum HOM05D004215 ORTHO05D005293 8.0e-96 354.4 292 64.7
Dinv16170 Davidia involucrata HOM05D004215 ORTHO05D005293 1.0e-95 354.0 295 62.7
TWI79G1401 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 1.0e-95 354.0 295 62.7
FvH4_4g26280 Fragaria vesca HOM05D004215 ORTHO05D005293 1.4e-95 353.6 297 63.3
FAN12G1757 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.4e-95 353.6 297 63.3
FAN12G4108 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.4e-95 353.6 297 63.3
CSS0048780 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 2.3e-95 352.8 280 65.4
Prupe.1G320800 Prunus persica HOM05D004215 ORTHO05D005293 2.3e-95 352.8 287 63.4
MD13G1031300 Malus domestica HOM05D004215 ORTHO05D005293 2.0e-94 349.7 291 62.9
CAN.G1489.9 Capsicum annuum HOM05D004215 ORTHO05D005293 2.6e-94 349.4 292 63.0
FAN22G1507 Fragaria x ananassa HOM05D004215 ORTHO05D005293 3.4e-94 349.0 294 62.2
Lj5g0023519 Lotus japonicus HOM05D004215 ORTHO05D005293 5.7e-94 348.2 272 65.4
MD16G1033500 Malus domestica HOM05D004215 ORTHO05D005293 5.7e-94 348.2 302 62.3
Phvul.007G035000 Phaseolus vulgaris HOM05D004215 ORTHO05D005293 7.5e-94 347.8 293 61.4
CiPaw.05G246100 Carya illinoinensis HOM05D004215 ORTHO05D005293 1.7e-93 346.7 293 62.5
Glyma.10G267000 Glycine max HOM05D004215 ORTHO05D005293 2.2e-93 346.3 300 62.0
Haze_00697 Corylus avellana HOM05D004215 ORTHO05D005293 6.3e-93 344.7 312 61.5
ClCG05G022300 Citrullus lanatus HOM05D004215 ORTHO05D005293 1.1e-92 344.0 297 61.3
CSS0000916 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 1.4e-92 343.6 296 62.2
arahy.Tifrunner.gnm1.ann1.BMT3C6 Arachis hypogaea HOM05D004215 ORTHO05D005293 2.4e-92 342.8 275 63.6
arahy.Tifrunner.gnm1.ann1.IPKA5V Arachis hypogaea HOM05D004215 ORTHO05D005293 3.1e-92 342.4 275 63.6
FAN17G1658 Fragaria x ananassa HOM05D004215 ORTHO05D005293 4.1e-92 342.0 281 64.1
VMungo0720G1296 Vigna mungo HOM05D004215 ORTHO05D005293 4.1e-92 342.0 293 61.4
Sed0020304 Sechium edule HOM05D004215 ORTHO05D005293 7.0e-92 341.3 294 60.2
TAR629G2922 Trochodendron aralioides HOM05D004215 ORTHO05D005293 7.0e-92 341.3 314 59.6
Psat6g222520 Pisum sativum HOM05D004215 ORTHO05D005293 9.2e-92 340.9 301 60.1
Lsat_1_v5_gn_8_41661 Lactuca sativa HOM05D004215 ORTHO05D005293 2.0e-91 339.7 295 61.7
CsaV3_5G034820 Cucumis sativus L. HOM05D004215 ORTHO05D005293 2.7e-91 339.3 298 59.7
Lalb_Chr06g0165701 Lupinus albus HOM05D004215 ORTHO05D005293 2.7e-91 339.3 279 62.0
FAN07G0674 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.0e-90 337.4 316 58.2
TWI31G0297 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 1.3e-90 337.0 292 61.6
Glyma.20G123700 Glycine max HOM05D004215 ORTHO05D005293 1.7e-90 336.7 275 62.9
MSTRG.13568 Avicennia marina HOM05D004215 ORTHO05D005293 8.6e-90 334.3 305 59.3
Hund25007 Selenicereus undatus HOM05D004215 ORTHO05D005293 1.1e-89 334.0 279 61.6
DCAR_023619 Daucus carota HOM05D004215 ORTHO05D005293 1.5e-89 333.6 269 62.8
HanXRQChr15g0466211 Helianthus annuus HOM05D004215 ORTHO05D005293 1.5e-89 333.6 299 59.2
MELO3C012293.2 Cucumis melo HOM05D004215 ORTHO05D005293 2.5e-89 332.8 282 61.0
Migut.L00828 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.2e-88 330.5 276 60.9
Lalb_Chr17g0338761 Lupinus albus HOM05D004215 ORTHO05D005293 1.2e-88 330.5 276 61.6
Sc14g0007220 Simmondsia chinensis HOM05D004215 ORTHO05D005293 1.2e-88 330.5 307 59.0
Migut.E00397 Erythranthe guttata HOM05D004215 ORTHO05D005293 4.7e-88 328.6 282 62.8
Rhsim09G0069000 Rhododendron simsii HOM05D004215 ORTHO05D005293 4.7e-88 328.6 248 64.5
Migut.L00651 Erythranthe guttata HOM05D004215 ORTHO05D005293 6.1e-88 328.2 274 60.9
Sed0017516 Sechium edule HOM05D004215 ORTHO05D005293 1.0e-87 327.4 307 57.3
Lj3A876G45 Lonicera japonica HOM05D004215 ORTHO05D005293 1.4e-87 327.0 267 63.3
Nitab4.5_0000350g0220 Nicotiana tabacum HOM05D004215 ORTHO05D005293 1.4e-87 327.0 295 61.4
SalBow8G1964 Salvia bowleyana HOM05D004215 ORTHO05D005293 2.3e-87 326.2 306 59.8
Actinidia31987 Actinidia chinensis HOM05D004215 ORTHO05D005293 6.8e-87 324.7 259 63.3
Sabra10G0086200 Salix brachista HOM05D004215 ORTHO05D005293 1.2e-86 323.9 280 61.8
Sabra10G0087900 Salix brachista HOM05D004215 ORTHO05D005293 1.2e-86 323.9 280 61.8
Actinidia36693 Actinidia chinensis HOM05D004215 ORTHO05D005293 3.4e-86 322.4 256 61.7
ECA233G2791 Erigeron canadensis HOM05D004215 ORTHO05D005293 3.4e-86 322.4 263 62.0
PGR102G1684 Punica granatum HOM05D004215 ORTHO05D005293 5.7e-86 321.6 281 61.6
EL10Ac6g14267 Beta vulgaris HOM05D004215 ORTHO05D005293 9.8e-86 320.9 298 57.4
SGA_v2.0_scaffold14G06920 Striga asiatica HOM05D004215 ORTHO05D005293 2.9e-85 319.3 290 58.6
MSTRG.2195 Avicennia marina HOM05D004215 ORTHO05D005293 8.3e-85 317.8 296 58.4
AUR62014123 Chenopodium quinoa HOM05D004215 ORTHO05D005293 8.3e-85 317.8 275 59.6
PSO478G0614 Papaver somniferum HOM05D004215 ORTHO05D005293 8.3e-85 317.8 275 59.3
unitig_699.g19481 Utricularia gibba HOM05D004215 ORTHO05D005293 2.4e-84 316.2 289 58.5
PSO017G7108 Papaver somniferum HOM05D004215 ORTHO05D005293 4.1e-84 315.5 275 58.2
Medtr1g108710 Medicago truncatula HOM05D004215 ORTHO05D005293 4.6e-83 312.0 277 60.3
Actinidia14939 Actinidia chinensis HOM05D004215 ORTHO05D005293 7.8e-83 311.2 259 59.5
AUR62002761 Chenopodium quinoa HOM05D004215 ORTHO05D005293 6.6e-82 308.1 192 74.0
MBI16_g21171_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 8.6e-82 307.8 303 57.1
Oeu004319.1 Olea europaea HOM05D004215 ORTHO05D005293 1.1e-81 307.4 248 64.5
HPP92_021849 Vanilla planifolia HOM05D004215 ORTHO05D005293 4.7e-80 302.0 293 55.6
CDE06G1149 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 6.2e-80 301.6 249 60.6
Aqoxy3G00166 Aquilegia oxysepala HOM05D004215 ORTHO05D005293 5.2e-79 298.5 267 57.3
PGR119G1032 Punica granatum HOM05D004215 ORTHO05D005293 1.7e-77 293.5 211 66.4
SEGI_29541 Sequoiadendron giganteum HOM05D004215 ORTHO05D005293 1.4e-76 290.4 213 64.8
DCAR_030188 Daucus carota HOM05D004215 ORTHO05D005293 5.4e-76 288.5 213 67.1
Nn4g24046 Nelumbo nucifera HOM05D004215 ORTHO05D005293 4.6e-75 285.4 256 59.4
CDE04G0818 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 6.0e-75 285.0 227 60.8
SGA_v2.0_scaffold50G18535 Striga asiatica HOM05D004215 ORTHO05D005293 2.3e-74 283.1 305 53.1
Hma1.2p1_0114F.1_g055430 Hydrangea macrophylla HOM05D004215 ORTHO05D005293 7.3e-73 278.1 224 62.9
Os02g0328300 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 9.5e-73 277.7 300 50.3
AagrBONN_evm.TU.Sc2ySwM_228.3165 Anthoceros agrestis HOM05D004215 ORTHO05D005293 2.1e-72 276.6 212 63.2
ATR0691G234 Amborella trichopoda HOM05D004215 ORTHO05D005293 1.4e-71 273.9 267 54.7
SMO174G0012 Selaginella moellendorffii HOM05D004215 ORTHO05D005293 1.1e-65 254.2 213 56.8
SHI16315 Sapria himalayana HOM05D004215 ORTHO05D005293 1.9e-65 253.4 264 51.9
Mapoly0004s0030 Marchantia polymorpha HOM05D004215 ORTHO05D005293 2.5e-65 253.1 237 56.1
Actinidia33607 Actinidia chinensis HOM05D004215 ORTHO05D005293 5.2e-63 245.4 295 46.1
Gohir.A05G317200 Gossypium hirsutum HOM05D004215 ORTHO05D005293 8.9e-63 244.6 211 62.6
Pp3c16_22650 Physcomitrium patens HOM05D004215 ORTHO05D005293 1.5e-62 243.8 211 57.3
GSVIVG01011796001 Vitis vinifera HOM05D004215 ORTHO05D005293 1.7e-58 230.3 142 74.6
Cc11_g09170 Coffea canephora HOM05D004215 ORTHO05D005293 3.9e-58 229.2 142 76.1
Os01g0120600 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 7.3e-57 224.9 212 52.8
Zm00001eb121490 Zea mays HOM05D004215 ORTHO05D005293 7.3e-57 224.9 284 44.7
Lj6A750T89 Lonicera japonica HOM05D004215 ORTHO05D005293 6.2e-56 221.9 142 71.1
Ca_23697_v3 Cicer arietinum L. HOM05D004215 ORTHO05D005293 7.6e-54 214.9 216 54.6
Zm00001eb241500 Zea mays HOM05D004215 ORTHO05D005293 2.7e-51 206.5 251 47.4
Actinidia15237 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.9e-49 200.3 176 57.4
Actinidia33626 Actinidia chinensis HOM05D004215 ORTHO05D005293 6.2e-48 195.3 182 56.6
BolC5t33841H Brassica oleracea HOM05D004215 ORTHO05D005293 1.2e-46 191.0 162 67.3
TPR.G4918 Trifolium pratense HOM05D004215 ORTHO05D005293 2.2e-45 186.8 114 75.4
vmacro01429 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 4.9e-45 185.7 127 69.3
Cre01.g000350 Chlamydomonas reinhardtii HOM05D004215 ORTHO05D005293 1.5e-41 174.1 245 42.9
Actinidia33606 Actinidia chinensis HOM05D004215 ORTHO05D005293 9.6e-41 171.4 214 42.5
Actinidia16703 Actinidia chinensis HOM05D004215 ORTHO05D005293 5.3e-39 165.6 110 71.8
MCO13G089 Micromonas commoda HOM05D004215 ORTHO05D005293 2.1e-35 153.7 211 42.7
vmacro01428 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 7.9e-35 151.8 101 70.3
BolC2t11573H Brassica oleracea HOM05D004215 ORTHO05D005293 5.3e-31 139.0 158 55.7
MBI10_g46302_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 4.5e-30 136.0 84 72.6
CBR_g23714 Chara braunii HOM05D004215 ORTHO05D005293 2.2e-29 133.7 269 34.9
BcaB07g30283 Brassica carinata HOM05D004215 ORTHO05D005293 2.1e-27 127.1 72 86.1
C02p55250 Brassica napus HOM05D004215 ORTHO05D005293 7.9e-27 125.2 177 46.3
RcHm_v2.0_Chr6g0253871 Rosa chinensis HOM05D004215 ORTHO05D005293 1.5e-25 120.9 82 67.1
RcHm_v2.0_Chr2g0123901 Rosa chinensis HOM05D004215 ORTHO05D005293 1.1e-23 114.8 86 64.0
SMO201G0141 Selaginella moellendorffii HOM05D028400 ORTHO05D005293 2.9e-21 106.7 184 33.7
arahy.Tifrunner.gnm1.ann1.B59VJ6 Arachis hypogaea HOM05D004215 ORTHO05D005293 3.8e-21 106.3 154 42.9
BcaC03g17546 Brassica carinata HOM05D004215 ORTHO05D005293 3.8e-21 106.3 134 50.7
Actinidia24608 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.5e-20 103.6 61 75.4
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 3.0e-18 96.7 62 71.0
SMO356G0347 Selaginella moellendorffii HOM05D004215 ORTHO05D018306 4.3e-17 92.8 154 33.8
Mapoly0118s0023 Marchantia polymorpha HOM05D004215 ORTHO05D018306 2.2e-16 90.5 263 28.9
TPR.G10991 Trifolium pratense HOM05D004215 ORTHO05D005293 6.3e-16 89.0 50 82.0
CBR_g8311 Chara braunii HOM05D004215 ORTHO05D018306 8.2e-16 88.6 156 35.9
AagrBONN_evm.TU.Sc2ySwM_228.585 Anthoceros agrestis HOM05D004215 ORTHO05D018306 5.3e-15 85.9 264 26.5
Pp3c20_8810 Physcomitrium patens HOM05D004215 ORTHO05D018306 4.5e-14 82.8 236 25.8
C08p45130 Brassica napus HOM05D004215 ORTHO05D005293 2.3e-10 70.5 40 85.0
BolC8t52061H Brassica oleracea HOM05D004215 ORTHO05D005293 2.3e-10 70.5 40 85.0
PRCOL_00001993 Prasinoderma coloniale HOM05D004215 ORTHO05D005293 2.8e-08 63.5 156 29.5
SEGI_37569 Sequoiadendron giganteum HOM05D004215 ORTHO05D018306 1.1e-07 61.6 143 29.4


User provided reference genes

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