Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g13380 Schrenkiella parvula HOM05D005599 ORTHO05D006921 1.7e-66 255.8 123 100.0
AT1G14990 Arabidopsis thaliana HOM05D005599 ORTHO05D006921 4.0e-63 244.6 123 92.7
Carub.0001s1476 Capsella rubella HOM05D005599 ORTHO05D006921 8.9e-63 243.4 123 94.3
CARHR015530 Cardamine hirsuta HOM05D005599 ORTHO05D006921 8.9e-63 243.4 123 92.7
A09p61660 Brassica napus HOM05D005599 ORTHO05D006921 1.2e-62 243.0 122 93.4
AL1G27050 Arabidopsis lyrata HOM05D005599 ORTHO05D006921 2.0e-62 242.3 123 92.7
A06p11010 Brassica napus HOM05D005599 ORTHO05D006921 9.9e-62 240.0 123 94.3
BcaB02g06563 Brassica carinata HOM05D005599 ORTHO05D006921 1.7e-61 239.2 123 93.5
BolC8t52072H Brassica oleracea HOM05D005599 ORTHO05D006921 2.9e-61 238.4 136 86.0
Aa31LG2G8490 Aethionema arabicum HOM05D005599 ORTHO05D006921 7.1e-60 233.8 122 88.5
BolC5t30050H Brassica oleracea HOM05D005599 ORTHO05D006921 9.2e-60 233.4 123 92.7
BraA09t41538Z Brassica rapa HOM05D005599 ORTHO05D006921 9.2e-60 233.4 140 82.1
THA.LOC104823847 Tarenaya hassleriana HOM05D005599 ORTHO05D006921 2.1e-56 222.2 123 84.6
COL.COLO4_20491 Corchorus olitorius HOM05D005599 ORTHO05D006921 4.0e-55 218.0 121 83.5
C05p13060 Brassica napus HOM05D005599 ORTHO05D006921 5.2e-55 217.6 131 84.0
Gohir.A03G120800 Gossypium hirsutum HOM05D005599 ORTHO05D006921 5.2e-55 217.6 120 84.2
Hund09673 Selenicereus undatus HOM05D005599 ORTHO05D006921 9.0e-55 216.9 123 82.9
AUR62032768 Chenopodium quinoa HOM05D005599 ORTHO05D006921 1.2e-54 216.5 123 82.1
Ciclev10017195m.g Citrus clementina HOM05D005599 ORTHO05D006921 1.2e-54 216.5 123 78.9
Thhalv10009435m.g Eutrema salsugineum HOM05D005599 ORTHO05D006921 2.6e-54 215.3 106 95.3
Gohir.D02G144100 Gossypium hirsutum HOM05D005599 ORTHO05D006921 2.6e-54 215.3 120 83.3
MD13G1024900 Malus domestica HOM05D005599 ORTHO05D006921 5.8e-54 214.2 117 82.9
Duzib251G0393 Durio zibethinus HOM05D005599 ORTHO05D006921 7.6e-54 213.8 115 85.2
Sed0017153 Sechium edule HOM05D005599 ORTHO05D006921 7.6e-54 213.8 119 83.2
MD16G1027400 Malus domestica HOM05D005599 ORTHO05D006921 9.9e-54 213.4 117 82.9
Ah.04g163140 Amaranthus hybridus HOM05D005599 ORTHO05D006921 1.3e-53 213.0 115 86.1
Manes.15G128100 Manihot esculenta HOM05D005599 ORTHO05D006921 1.3e-53 213.0 123 80.5
Prupe.1G325600 Prunus persica HOM05D005599 ORTHO05D006921 1.7e-53 212.6 123 79.7
Thecc.02G282300 Theobroma cacao HOM05D005599 ORTHO05D006921 1.7e-53 212.6 115 85.2
EL10Ac9g21851 Beta vulgaris HOM05D005599 ORTHO05D006921 2.2e-53 212.2 123 79.7
CiPaw.06G011400 Carya illinoinensis HOM05D005599 ORTHO05D006921 3.8e-53 211.5 123 79.7
FAN05G3069 Fragaria x ananassa HOM05D005599 ORTHO05D006921 4.9e-53 211.1 115 83.5
FAN12G4015 Fragaria x ananassa HOM05D005599 ORTHO05D006921 4.9e-53 211.1 115 83.5
FAN25G3147 Fragaria x ananassa HOM05D005599 ORTHO05D006921 4.9e-53 211.1 115 83.5
RcHm_v2.0_Chr4g0425701 Rosa chinensis HOM05D005599 ORTHO05D006921 4.9e-53 211.1 115 83.5
Sc14g0007100 Simmondsia chinensis HOM05D005599 ORTHO05D006921 6.4e-53 210.7 123 80.5
Atru.chr11.497 Acer truncatum HOM05D005599 ORTHO05D006921 8.4e-53 210.3 121 78.5
C08p45240 Brassica napus HOM05D005599 ORTHO05D006921 8.4e-53 210.3 105 93.3
Glyma.19G089600 Glycine max HOM05D005599 ORTHO05D006921 1.4e-52 209.5 119 79.8
QL01p001565 Quercus lobata HOM05D005599 ORTHO05D006921 1.9e-52 209.1 122 78.7
TWI79G1349 Tripterygium wilfordii HOM05D005599 ORTHO05D006921 2.4e-52 208.8 123 79.7
ClCG07G006660 Citrullus lanatus HOM05D005599 ORTHO05D006921 3.2e-52 208.4 115 83.5
FAN07G1516 Fragaria x ananassa HOM05D005599 ORTHO05D006921 3.2e-52 208.4 115 82.6
PGR004G1422 Punica granatum HOM05D005599 ORTHO05D006921 3.2e-52 208.4 123 78.0
Glyma.16G057902 Glycine max HOM05D005599 ORTHO05D006921 4.2e-52 208.0 123 77.2
Peaxi162Scf00253g01125 Petunia axillaris HOM05D005599 ORTHO05D006921 4.2e-52 208.0 123 78.9
Potri.008G129900 Populus trichocarpa HOM05D005599 ORTHO05D006921 5.4e-52 207.6 123 78.0
BraA06t24281Z Brassica rapa HOM05D005599 ORTHO05D006921 7.1e-52 207.2 106 93.4
CsaV3_5G013870 Cucumis sativus L. HOM05D005599 ORTHO05D006921 7.1e-52 207.2 115 82.6
Nitab4.5_0000426g0280 Nicotiana tabacum HOM05D005599 ORTHO05D006921 7.1e-52 207.2 115 82.6
Nitab4.5_0004230g0050 Nicotiana tabacum HOM05D005599 ORTHO05D006921 7.1e-52 207.2 115 82.6
Dinv14427 Davidia involucrata HOM05D005599 ORTHO05D006921 9.3e-52 206.8 123 76.4
Os01g0606050 Oryza sativa ssp. japonica HOM05D005599 ORTHO05D006921 2.1e-51 205.7 117 80.3
GSVIVG01011752001 Vitis vinifera HOM05D005599 ORTHO05D006921 2.7e-51 205.3 123 76.4
Cfa008617 Carpinus fangiana HOM05D005599 ORTHO05D006921 3.5e-51 204.9 115 80.9
CAN.G1244.3 Capsicum annuum HOM05D005599 ORTHO05D006921 4.6e-51 204.5 116 80.2
FvH4_4g19980 Fragaria vesca HOM05D005599 ORTHO05D006921 4.6e-51 204.5 115 82.6
Rhsim09G0066400 Rhododendron simsii HOM05D005599 ORTHO05D006921 4.6e-51 204.5 123 75.6
MELO3C018308.2 Cucumis melo HOM05D005599 ORTHO05D006921 7.8e-51 203.8 115 81.7
Potri.010G112300 Populus trichocarpa HOM05D005599 ORTHO05D006921 7.8e-51 203.8 115 80.9
Aqoxy3G01068 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 1.7e-50 202.6 113 82.3
Phvul.001G094900 Phaseolus vulgaris HOM05D005599 ORTHO05D006921 1.7e-50 202.6 115 80.0
Cc11_g08600 Coffea canephora HOM05D005599 ORTHO05D006921 2.3e-50 202.2 115 78.3
Lalb_Chr08g0237401 Lupinus albus HOM05D005599 ORTHO05D006921 2.3e-50 202.2 115 80.0
TAR622G1178 Trochodendron aralioides HOM05D005599 ORTHO05D006921 3.0e-50 201.8 123 75.6
BcaC07g38244 Brassica carinata HOM05D005599 ORTHO05D006921 3.9e-50 201.4 106 91.5
C08p09930 Brassica napus HOM05D005599 ORTHO05D006921 3.9e-50 201.4 106 91.5
BolC8t48670H Brassica oleracea HOM05D005599 ORTHO05D006921 3.9e-50 201.4 106 91.5
ATR0796G095 Amborella trichopoda HOM05D005599 ORTHO05D006921 6.6e-50 200.7 114 80.7
MBI16_g23758_MAGBIO Magnolia biondii HOM05D005599 ORTHO05D006921 8.7e-50 200.3 122 76.2
Zm00001eb161570 Zea mays HOM05D005599 ORTHO05D006921 8.7e-50 200.3 117 76.1
vmacro14440 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 1.1e-49 199.9 123 74.8
PGSC0003DMG400005984 Solanum tuberosum HOM05D005599 ORTHO05D006921 1.5e-49 199.5 116 78.4
PSO170G3715 Papaver somniferum HOM05D005599 ORTHO05D006921 1.9e-49 199.1 113 81.4
Lj6g0000510 Lotus japonicus HOM05D005599 ORTHO05D006921 3.3e-49 198.4 123 74.0
RcHm_v2.0_Chr4g0441361 Rosa chinensis HOM05D005599 ORTHO05D006921 5.6e-49 197.6 123 75.6
TPR.G19139 Trifolium pratense HOM05D005599 ORTHO05D006921 5.6e-49 197.6 123 74.8
Hma1.2p1_0096F.1_g047800 Hydrangea macrophylla HOM05D005599 ORTHO05D006921 7.3e-49 197.2 123 73.2
Medtr1g069405 Medicago truncatula HOM05D005599 ORTHO05D006921 7.3e-49 197.2 115 78.3
Ca_21512_v3 Cicer arietinum L. HOM05D005599 ORTHO05D006921 9.6e-49 196.8 123 74.0
Solyc04g007700.3 Solanum lycopersicum HOM05D005599 ORTHO05D006921 1.6e-48 196.1 116 76.7
VMungo0464G0261 Vigna mungo HOM05D005599 ORTHO05D006921 1.6e-48 196.1 123 74.0
Psat6g049960 Pisum sativum HOM05D005599 ORTHO05D006921 2.8e-48 195.3 123 74.8
DCAR_023596 Daucus carota HOM05D005599 ORTHO05D006921 4.8e-48 194.5 123 70.7
MSTRG.6631 Avicennia marina HOM05D005599 ORTHO05D006921 8.1e-48 193.7 116 76.7
Sopen04g002790 Solanum pennellii HOM05D005599 ORTHO05D006921 8.1e-48 193.7 116 75.9
DCAR_026778 Daucus carota HOM05D005599 ORTHO05D006921 1.1e-47 193.4 115 74.8
Eucgr.B01298 Eucalyptus grandis HOM05D005599 ORTHO05D006921 1.4e-47 193.0 123 72.4
CANSAT11G1373 Cannabis sativa HOM05D005599 ORTHO05D006921 2.4e-47 192.2 123 71.5
SGA_v2.0_scaffold181G39695 Striga asiatica HOM05D005599 ORTHO05D006921 2.4e-47 192.2 113 77.0
HPP92_003868 Vanilla planifolia HOM05D005599 ORTHO05D006921 3.1e-47 191.8 122 75.4
HPP92_003899 Vanilla planifolia HOM05D005599 ORTHO05D006921 3.1e-47 191.8 122 75.4
CDE07G0704 Ceratophyllum demersum HOM05D005599 ORTHO05D006921 4.0e-47 191.4 122 72.1
SGA_v2.0_scaffold154G37132 Striga asiatica HOM05D005599 ORTHO05D006921 5.3e-47 191.0 113 76.1
AUR62042684 Chenopodium quinoa HOM05D005599 ORTHO05D006921 5.8e-46 187.6 109 78.0
unitig_899.g15269 Utricularia gibba HOM05D005599 ORTHO05D006921 5.8e-46 187.6 114 77.2
Gorai.005G161400 Gossypium raimondii HOM05D005599 ORTHO05D006921 9.9e-46 186.8 103 82.5
Lsat_1_v5_gn_9_79661 Lactuca sativa HOM05D005599 ORTHO05D006921 2.2e-45 185.7 116 72.4
Cpa.g.sc65.146 Carica papaya HOM05D005599 ORTHO05D006921 4.9e-45 184.5 105 80.0
Dinv07654 Davidia involucrata HOM05D005599 ORTHO05D006921 8.4e-45 183.7 105 78.1
HanXRQChr08g0212121 Helianthus annuus HOM05D005599 ORTHO05D006921 1.1e-44 183.3 116 72.4
ECA236G1659 Erigeron canadensis HOM05D005599 ORTHO05D006921 3.2e-44 181.8 116 72.4
HanXRQChr12g0364441 Helianthus annuus HOM05D005599 ORTHO05D006921 5.4e-44 181.0 116 71.6
CSS0001207 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 1.0e-42 176.8 106 75.5
Sabra08G0098500 Salix brachista HOM05D005599 ORTHO05D006921 1.0e-42 176.8 106 76.4
Haze_10995 Corylus avellana HOM05D005599 ORTHO05D006921 1.3e-42 176.4 105 75.2
CSS0007655 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 2.3e-42 175.6 106 74.5
CSS0037826 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 2.3e-42 175.6 106 74.5
arahy.Tifrunner.gnm1.ann1.5FG4B2 Arachis hypogaea HOM05D005599 ORTHO05D006921 3.9e-42 174.9 102 75.5
arahy.Tifrunner.gnm1.ann1.UU8CC3 Arachis hypogaea HOM05D005599 ORTHO05D006921 3.9e-42 174.9 106 73.6
arahy.Tifrunner.gnm1.ann1.5G098T Arachis hypogaea HOM05D005599 ORTHO05D006921 5.1e-42 174.5 106 73.6
Sed0011013 Sechium edule HOM05D005599 ORTHO05D006921 6.7e-42 174.1 98 81.6
SEGI_33740 Sequoiadendron giganteum HOM05D005599 ORTHO05D006921 6.7e-42 174.1 112 69.6
Oeu045860.1 Olea europaea HOM05D005599 ORTHO05D006921 8.7e-42 173.7 99 77.8
Aqoxy1G03319 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 2.5e-41 172.2 97 80.4
Sabra10G0082600 Salix brachista HOM05D005599 ORTHO05D006921 5.6e-41 171.0 113 69.0
SGA_v2.0_scaffold6G03128 Striga asiatica HOM05D005599 ORTHO05D006921 7.4e-41 170.6 114 69.3
Oeu003383.1 Olea europaea HOM05D005599 ORTHO05D006921 9.6e-41 170.2 99 77.8
vmacro00414 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 9.6e-41 170.2 106 72.6
PSO782G0484 Papaver somniferum HOM05D005599 ORTHO05D006921 2.8e-40 168.7 98 78.6
AUR62014127 Chenopodium quinoa HOM05D005599 ORTHO05D006921 8.1e-40 167.2 86 87.2
Migut.M00054 Erythranthe guttata HOM05D005599 ORTHO05D006921 4.0e-39 164.9 121 68.6
BcaC05g25431 Brassica carinata HOM05D005599 ORTHO05D006921 7.6e-38 160.6 123 69.9
Pp3c16_10100 Physcomitrium patens HOM05D005599 ORTHO05D006921 3.3e-33 145.2 113 56.6
arahy.Tifrunner.gnm1.ann1.XM49AS Arachis hypogaea HOM05D005599 ORTHO05D006921 1.9e-28 129.4 75 76.0
Mapoly0035s0140 Marchantia polymorpha HOM05D005599 ORTHO05D006921 3.2e-28 128.6 111 53.2
Eucgr.E01608 Eucalyptus grandis HOM05D005599 ORTHO05D006921 4.2e-28 128.3 107 58.9
Eucgr.B02904 Eucalyptus grandis HOM05D005599 ORTHO05D006921 4.3e-25 118.2 95 57.9
SGA_v2.0_scaffold2G00929 Striga asiatica HOM05D005599 ORTHO05D006921 1.2e-22 110.2 65 75.4
Nn4g24251 Nelumbo nucifera HOM05D005599 ORTHO05D006921 7.2e-20 100.9 57 80.7
MBI16_g23757_MAGBIO Magnolia biondii HOM05D005599 ORTHO05D006921 3.9e-18 95.1 68 66.2
MBI16_g23756_MAGBIO Magnolia biondii HOM05D000079 ORTHO05D016475 3.3e-17 92.0 69 63.8
CBR_g40805 Chara braunii HOM05D005599 ORTHO05D006921 1.3e-13 80.1 65 53.8
DCAR_032107 Daucus carota HOM05D005599 ORTHO05D006921 2.5e-12 75.9 61 50.8
SGA_v2.0_scaffold135G34854 Striga asiatica HOM05D005599 ORTHO05D006921 7.9e-11 70.9 44 61.4
QL08p008929 Quercus lobata HOM05D005599 ORTHO05D006921 6.3e-08 61.2 41 63.4


User provided reference genes

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