Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 2.6e-135 485.3 233 100.0
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 1.0e-128 463.4 232 96.1
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 2.0e-127 459.1 233 94.4
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 1.3e-126 456.4 232 94.4
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 1.7e-126 456.1 232 94.4
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 8.2e-126 453.8 233 93.1
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 7.0e-125 450.7 233 91.8
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 7.2e-122 440.7 235 91.9
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 2.1e-121 439.1 235 91.5
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 4.7e-121 438.0 231 91.8
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 6.1e-121 437.6 229 93.0
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 4.0e-120 434.9 235 90.6
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 8.8e-120 433.7 235 90.2
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 1.2e-119 433.3 235 90.6
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 4.4e-119 431.4 232 89.7
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 1.3e-118 429.9 232 89.2
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 2.8e-118 428.7 232 89.2
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 6.6e-99 364.4 232 74.6
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 5.6e-98 361.3 212 83.5
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 4.0e-96 355.1 233 73.0
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 2.0e-95 352.8 233 70.8
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 3.4e-95 352.1 226 73.5
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 3.4e-95 352.1 226 73.5
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 4.4e-95 351.7 233 70.4
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 7.5e-95 350.9 233 74.2
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 1.7e-94 349.7 233 72.5
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 3.7e-94 348.6 227 71.8
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 4.9e-94 348.2 233 73.0
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 8.3e-94 347.4 226 72.1
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 8.3e-94 347.4 226 72.1
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 1.1e-93 347.1 229 72.5
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 1.4e-93 346.7 226 72.1
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 1.9e-93 346.3 221 73.8
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 1.2e-92 343.6 234 70.1
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 1.2e-92 343.6 226 72.6
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 1.6e-92 343.2 233 72.1
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 1.6e-92 343.2 233 69.5
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 2.0e-92 342.8 226 73.0
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 2.0e-92 342.8 233 71.7
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 3.5e-92 342.0 250 70.4
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 3.5e-92 342.0 218 72.5
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 6.0e-92 341.3 218 72.9
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 7.8e-92 340.9 217 74.7
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 7.8e-92 340.9 226 70.8
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 1.0e-91 340.5 226 72.6
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 1.7e-91 339.7 233 70.0
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.7e-91 339.7 217 74.2
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 1.7e-91 339.7 226 70.8
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 2.3e-91 339.3 222 72.5
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 3.0e-91 339.0 226 69.9
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 8.6e-91 337.4 233 69.1
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 1.1e-90 337.0 221 72.4
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 1.1e-90 337.0 218 72.5
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.1e-90 337.0 222 71.6
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 3.3e-90 335.5 233 68.7
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 7.3e-90 334.3 233 70.0
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 7.3e-90 334.3 233 68.7
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.1e-89 332.8 235 68.5
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 3.6e-89 332.0 226 69.5
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 6.2e-89 331.3 235 68.1
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.1e-88 330.5 217 72.4
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 1.8e-88 329.7 235 68.1
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 3.1e-88 328.9 235 68.1
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 4.0e-88 328.6 228 70.6
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 5.2e-88 328.2 220 69.5
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 5.2e-88 328.2 234 66.2
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.2e-87 327.0 235 67.7
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 2.0e-87 326.2 244 65.6
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 2.6e-87 325.9 219 69.9
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 2.6e-87 325.9 222 69.4
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 4.4e-87 325.1 222 67.1
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 5.8e-87 324.7 222 67.1
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 7.5e-87 324.3 226 69.5
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 7.5e-87 324.3 233 68.2
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 9.8e-87 323.9 235 68.5
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 2.2e-86 322.8 229 68.6
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 1.1e-85 320.5 217 69.6
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 2.4e-85 319.3 218 67.4
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 2.4e-85 319.3 212 70.3
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 3.2e-85 318.9 224 66.1
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 7.1e-85 317.8 237 63.7
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.6e-84 316.6 250 62.8
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 2.7e-84 315.8 226 65.5
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 2.7e-84 315.8 222 68.0
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 6.0e-84 314.7 250 62.0
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 1.0e-83 313.9 231 64.9
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 1.0e-83 313.9 220 67.3
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 2.3e-83 312.8 223 68.2
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 2.3e-83 312.8 226 67.3
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 3.9e-83 312.0 215 68.8
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 6.6e-83 311.2 213 69.0
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 1.1e-82 310.5 226 67.3
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 1.5e-82 310.1 232 64.7
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 1.9e-82 309.7 238 63.9
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 3.3e-82 308.9 212 68.4
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 5.6e-82 308.1 226 66.4
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 1.2e-81 307.0 207 70.5
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.6e-81 306.6 219 67.6
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 3.6e-81 305.4 236 62.7
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 4.7e-81 305.1 237 66.2
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 4.7e-81 305.1 237 66.2
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 2.3e-80 302.8 213 66.7
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 3.1e-80 302.4 228 62.7
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 6.8e-80 301.2 225 64.4
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 6.8e-80 301.2 233 63.9
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 6.8e-80 301.2 233 64.4
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 8.9e-80 300.8 226 64.2
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.2e-79 300.4 217 68.2
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 2.0e-79 299.7 221 64.7
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 2.6e-79 299.3 220 65.5
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 2.6e-79 299.3 220 65.5
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 2.6e-79 299.3 230 62.6
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 3.4e-79 298.9 237 65.4
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 7.6e-79 297.7 232 64.2
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 3.8e-78 295.4 211 65.9
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 7.1e-77 291.2 228 61.0
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 9.2e-77 290.8 228 63.2
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 4.6e-76 288.5 255 57.6
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 3.0e-75 285.8 242 57.9
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 5.1e-75 285.0 226 61.9
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 2.4e-72 276.2 238 59.2
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 1.5e-71 273.5 226 59.3
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 9.9e-71 270.8 174 78.2
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 2.2e-70 269.6 217 63.6
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 3.2e-69 265.8 186 69.9
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 2.7e-68 262.7 181 68.0
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.0e-67 260.8 187 68.4
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 1.0e-67 260.8 233 58.4
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 3.9e-67 258.8 233 57.1
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 1.1e-66 257.3 232 57.3
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 1.3e-62 243.8 210 52.4
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 2.1e-60 236.5 163 69.3
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 3.3e-58 229.2 159 67.3
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 2.1e-57 226.5 160 64.4
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 1.5e-55 220.3 175 62.9
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 5.5e-53 211.8 225 48.0
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 5.5e-53 211.8 178 61.2
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 2.3e-51 206.5 188 59.6
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 3.9e-51 205.7 213 48.8
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 3.7e-49 199.1 152 68.4
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 1.7e-46 190.3 202 47.5
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 8.4e-46 188.0 202 47.0
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 4.2e-45 185.7 146 65.8
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 1.1e-42 177.6 120 64.2
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 1.8e-40 170.2 133 58.6
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 6.7e-35 151.8 218 42.2
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 2.5e-34 149.8 209 39.7
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 2.2e-30 136.7 99 60.6
BcaC02g12495 Brassica carinata HOM05D004213 ORTHO05D005091 1.1e-29 134.4 90 75.6
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 1.1e-29 134.4 106 63.2
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 3.9e-27 125.9 212 37.7
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 1.1e-26 124.4 158 43.7
Aa31LG5G23500 Aethionema arabicum HOM05D004213 ORTHO05D005091 2.6e-26 123.2 73 84.9
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 5.9e-23 112.1 92 59.8
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 7.2e-21 105.1 85 63.5
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 6.7e-19 98.6 202 28.2
PGSC0003DMG402011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 8.8e-19 98.2 67 67.2
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 2.2e-17 93.6 72 69.4
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.1e-16 89.4 67 68.7
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.2e-15 87.8 77 62.3
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 4.5e-15 85.9 77 61.0
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 2.9e-14 83.2 106 39.6
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 1.2e-12 77.8 62 62.9
FAN03G3471 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.3e-09 67.8 54 61.1
Cfa024785 Carpinus fangiana HOM05D004213 ORTHO05D122664 2.8e-09 66.6 152 30.9
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 3.1e-08 63.2 46 73.9
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 1.0e-06 58.2 55 61.8
Ah.13g065600 Amaranthus hybridus HOM05D000001 ORTHO05D010162 8.5e-06 55.1 44 65.9


User provided reference genes

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