Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g12820 Schrenkiella parvula HOM05D005857 ORTHO05D007193 3.0e-37 157.9 74 100.0
BolC5t29979H Brassica oleracea HOM05D005857 ORTHO05D007193 2.5e-36 154.8 74 98.6
A06p10470 Brassica napus HOM05D005857 ORTHO05D007193 6.2e-35 150.2 75 97.3
C05p12250 Brassica napus HOM05D005857 ORTHO05D007193 6.2e-35 150.2 75 97.3
BraA06t24227Z Brassica rapa HOM05D005857 ORTHO05D007193 6.2e-35 150.2 75 97.3
BcaB08g34397 Brassica carinata HOM05D005857 ORTHO05D007193 1.4e-34 149.1 74 94.6
Thhalv10009257m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 2.4e-34 148.3 74 94.6
AL1G26340 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 5.2e-34 147.1 74 93.2
AT1G14450 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 5.2e-34 147.1 74 93.2
BcaB03g13096 Brassica carinata HOM05D005857 ORTHO05D007193 5.2e-34 147.1 75 94.7
BcaC05g25348 Brassica carinata HOM05D005857 ORTHO05D007193 2.0e-33 145.2 75 94.7
Carub.0001s1416 Capsella rubella HOM05D005857 ORTHO05D007193 2.2e-32 141.7 74 89.2
CARHR014900 Cardamine hirsuta HOM05D005857 ORTHO05D007193 6.4e-32 140.2 74 89.2
C08p16740 Brassica napus HOM05D005857 ORTHO05D007193 8.4e-32 139.8 75 90.7
BcaB07g30330 Brassica carinata HOM05D005857 ORTHO05D007193 1.9e-31 138.7 74 90.5
BcaC03g17146 Brassica carinata HOM05D005857 ORTHO05D007193 2.4e-31 138.3 74 90.5
C02p50660 Brassica napus HOM05D005857 ORTHO05D007193 7.1e-31 136.7 74 89.2
BolC2t11149H Brassica oleracea HOM05D005857 ORTHO05D007193 7.1e-31 136.7 74 89.2
BraA02t08316Z Brassica rapa HOM05D005857 ORTHO05D007193 7.1e-31 136.7 74 89.2
Carub.0005s0154 Capsella rubella HOM05D005857 ORTHO05D007193 7.1e-31 136.7 74 89.2
CARHR145070 Cardamine hirsuta HOM05D005857 ORTHO05D007193 7.1e-31 136.7 74 89.2
Thhalv10005238m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 7.1e-31 136.7 74 90.5
Sp2g13760 Schrenkiella parvula HOM05D005857 ORTHO05D007193 9.3e-31 136.3 74 87.8
AT2G02510 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 1.2e-30 136.0 74 87.8
Aa31LG2G7600 Aethionema arabicum HOM05D005857 ORTHO05D007193 3.5e-30 134.4 76 85.5
AL5G11780 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 1.7e-29 132.1 74 85.1
BcaC07g41575 Brassica carinata HOM05D005857 ORTHO05D007193 8.7e-29 129.8 74 85.1
THA.LOC104801779 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 1.9e-28 128.6 70 85.7
Aa31LG1G600 Aethionema arabicum HOM05D005857 ORTHO05D007193 7.3e-28 126.7 74 82.4
THA.LOC104805131 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 7.3e-28 126.7 70 81.4
COL.COLO4_31107 Corchorus olitorius HOM05D005857 ORTHO05D007193 4.9e-24 114.0 74 71.6
Manes.14G164233 Manihot esculenta HOM05D005857 ORTHO05D007193 2.4e-23 111.7 64 78.1
A02p32930 Brassica napus HOM05D005857 ORTHO05D007193 3.2e-23 111.3 64 85.9
QL02p103650 Quercus lobata HOM05D005857 ORTHO05D007193 3.2e-23 111.3 71 70.4
CANSAT01G1822 Cannabis sativa HOM05D005857 ORTHO05D007193 1.6e-22 109.0 70 70.0
FvH4_5g27520 Fragaria vesca HOM05D005857 ORTHO05D007193 1.6e-22 109.0 64 75.0
TWI23G0165 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 2.1e-22 108.6 73 69.9
CiPaw.06G177300 Carya illinoinensis HOM05D005857 ORTHO05D007193 2.7e-22 108.2 70 70.0
Potri.004G229900 Populus trichocarpa HOM05D005857 ORTHO05D007193 3.5e-22 107.8 68 73.5
AUR62040136 Chenopodium quinoa HOM05D005857 ORTHO05D007193 4.6e-22 107.5 68 75.0
TWI59G0768 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 4.6e-22 107.5 72 69.4
Thecc.06G020800 Theobroma cacao HOM05D005857 ORTHO05D007193 6.0e-22 107.1 64 75.0
Cpa.g.sc34.126 Carica papaya HOM05D005857 ORTHO05D007193 1.0e-21 106.3 68 72.1
Manes.06G013700 Manihot esculenta HOM05D005857 ORTHO05D007193 1.0e-21 106.3 64 73.4
PGR042G3007 Punica granatum HOM05D005857 ORTHO05D007193 1.7e-21 105.5 74 64.9
Duzib133G0295 Durio zibethinus HOM05D005857 ORTHO05D007193 3.9e-21 104.4 68 70.6
SalBow1G1563 Salvia bowleyana HOM05D005857 ORTHO05D007193 6.6e-21 103.6 63 71.4
Aqoxy5G01841 Aquilegia oxysepala HOM05D005857 ORTHO05D007193 1.1e-20 102.8 61 75.4
AUR62032483 Chenopodium quinoa HOM05D005857 ORTHO05D007193 1.1e-20 102.8 68 72.1
Gohir.A05G160000 Gossypium hirsutum HOM05D005857 ORTHO05D007193 1.1e-20 102.8 74 63.5
Gohir.D05G162700 Gossypium hirsutum HOM05D005857 ORTHO05D007193 1.1e-20 102.8 74 63.5
Gorai.009G167700 Gossypium raimondii HOM05D005857 ORTHO05D007193 1.1e-20 102.8 74 63.5
Oeu010607.1 Olea europaea HOM05D005857 ORTHO05D007193 1.5e-20 102.4 72 65.3
MD08G1249300 Malus domestica HOM05D005857 ORTHO05D007193 1.9e-20 102.1 57 78.9
RcHm_v2.0_Chr7g0218891 Rosa chinensis HOM05D005857 ORTHO05D007193 1.9e-20 102.1 73 65.8
MD15G1444100 Malus domestica HOM05D005857 ORTHO05D007193 2.5e-20 101.7 57 78.9
Nitab4.5_0006159g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 2.5e-20 101.7 73 67.1
PSO210G5758 Papaver somniferum HOM05D005857 ORTHO05D007193 2.5e-20 101.7 67 71.6
Prupe.1G586500 Prunus persica HOM05D005857 ORTHO05D007193 2.5e-20 101.7 60 73.3
CSS0006636 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 3.3e-20 101.3 61 73.8
CSS0043387 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 3.3e-20 101.3 61 73.8
Solyc01g102830.3 Solanum lycopersicum HOM05D005857 ORTHO05D007193 3.3e-20 101.3 73 67.1
Sopen01g045230 Solanum pennellii HOM05D005857 ORTHO05D007193 3.3e-20 101.3 73 67.1
vmacro01623 Vaccinium macrocarpon HOM05D005857 ORTHO05D007193 3.3e-20 101.3 61 73.8
CsaV3_5G027560 Cucumis sativus L. HOM05D005857 ORTHO05D007193 4.3e-20 100.9 72 63.9
PSO447G0367 Papaver somniferum HOM05D005857 ORTHO05D007193 4.3e-20 100.9 67 70.1
Peaxi162Scf00194g01021 Petunia axillaris HOM05D005857 ORTHO05D007193 4.3e-20 100.9 58 75.9
PGSC0003DMG400018258 Solanum tuberosum HOM05D005857 ORTHO05D007193 4.3e-20 100.9 73 67.1
CAN.G1379.7 Capsicum annuum HOM05D005857 ORTHO05D007193 5.6e-20 100.5 66 68.2
Nitab4.5_0000521g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 7.3e-20 100.1 73 64.4
Migut.B00707 Erythranthe guttata HOM05D005857 ORTHO05D007193 1.3e-19 99.4 63 71.4
FAN18G0749 Fragaria x ananassa HOM05D005857 ORTHO05D007193 1.6e-19 99.0 53 81.1
SGA_v2.0_scaffold100G29556 Striga asiatica HOM05D001195 ORTHO05D001138 1.6e-19 99.0 74 66.2
Cc08_g11670 Coffea canephora HOM05D005857 ORTHO05D007193 3.6e-19 97.8 73 64.4
Oeu000158.1 Olea europaea HOM05D005857 ORTHO05D007193 3.6e-19 97.8 62 69.4
Sed0006374 Sechium edule HOM05D005857 ORTHO05D007193 4.8e-19 97.4 61 68.9
FAN04G0073 Fragaria x ananassa HOM05D005857 ORTHO05D007193 6.2e-19 97.1 53 79.2
DCAR_001733 Daucus carota HOM05D005857 ORTHO05D007193 1.1e-18 96.3 73 63.0
Sc03g0005520 Simmondsia chinensis HOM05D005857 ORTHO05D007193 1.4e-18 95.9 66 68.2
Cfa004425 Carpinus fangiana HOM05D005857 ORTHO05D007193 1.8e-18 95.5 57 71.9
Haze_09965 Corylus avellana HOM05D005857 ORTHO05D007193 1.8e-18 95.5 57 71.9
FAN08G0400 Fragaria x ananassa HOM05D005857 ORTHO05D007193 2.4e-18 95.1 53 79.2
HanXRQChr11g0343801 Helianthus annuus HOM05D005857 ORTHO05D007193 2.4e-18 95.1 66 65.2
ATR1089G102 Amborella trichopoda HOM05D005857 ORTHO05D007193 5.3e-18 94.0 54 72.2
Lalb_Chr12g0195891 Lupinus albus HOM05D005857 ORTHO05D007193 5.3e-18 94.0 66 63.6
TAR628G1233 Trochodendron aralioides HOM05D005857 ORTHO05D007193 5.3e-18 94.0 70 62.9
CiPaw.05G001000 Carya illinoinensis HOM05D005857 ORTHO05D007193 6.9e-18 93.6 70 61.4
SHI07423 Sapria himalayana HOM05D005857 ORTHO05D007193 9.0e-18 93.2 59 67.8
TPR.G6546 Trifolium pratense HOM05D005857 ORTHO05D007193 1.2e-17 92.8 57 73.7
Atru.chr6.134 Acer truncatum HOM05D005857 ORTHO05D007193 1.5e-17 92.4 68 60.3
Atru.chr6.187 Acer truncatum HOM05D005857 ORTHO05D007193 1.5e-17 92.4 68 60.3
EL10Ac3g06399 Beta vulgaris HOM05D005857 ORTHO05D007193 1.5e-17 92.4 49 79.6
MBI03_g21081_MAGBIO Magnolia biondii HOM05D005857 ORTHO05D007193 1.5e-17 92.4 53 73.6
FAN13G1483 Fragaria x ananassa HOM05D005857 ORTHO05D007193 2.0e-17 92.0 56 71.4
Lj4g0009904 Lotus japonicus HOM05D005857 ORTHO05D007193 2.0e-17 92.0 57 70.2
Zm00001eb244200 Zea mays HOM05D005857 ORTHO05D007193 2.0e-17 92.0 62 62.9
MD11G1276400 Malus domestica HOM05D005857 ORTHO05D007193 2.6e-17 91.7 73 63.0
Nitab4.5_0001085g0140 Nicotiana tabacum HOM05D005857 ORTHO05D007193 3.4e-17 91.3 62 66.1
Os02g0564200 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 3.4e-17 91.3 63 60.3
Psat0s2555g0160 Pisum sativum HOM05D005857 ORTHO05D007193 5.8e-17 90.5 57 75.4
Glyma.17G002300 Glycine max HOM05D005857 ORTHO05D007193 7.6e-17 90.1 55 70.9
Lsat_1_v5_gn_9_83180 Lactuca sativa HOM05D005857 ORTHO05D007193 7.6e-17 90.1 66 65.2
Medtr4g134550 Medicago truncatula HOM05D005857 ORTHO05D007193 7.6e-17 90.1 57 70.2
Ciclev10003044m.g Citrus clementina HOM05D005857 ORTHO05D007193 2.2e-16 88.6 60 61.7
Ciclev10003046m.g Citrus clementina HOM05D005857 ORTHO05D007193 2.2e-16 88.6 60 61.7
Ca_13524_v3 Cicer arietinum L. HOM05D005857 ORTHO05D007193 2.9e-16 88.2 58 69.0
HanXRQChr10g0285581 Helianthus annuus HOM05D005857 ORTHO05D007193 8.4e-16 86.7 66 62.1
unitig_8.g2962 Utricularia gibba HOM05D005857 ORTHO05D007193 1.1e-15 86.3 47 80.9
Lsat_1_v5_gn_9_124880 Lactuca sativa HOM05D005857 ORTHO05D007193 2.4e-15 85.1 58 63.8
ECA236G3879 Erigeron canadensis HOM05D005857 ORTHO05D007193 5.4e-15 84.0 71 57.7
Actinidia11730 Actinidia chinensis HOM05D005857 ORTHO05D007193 7.1e-15 83.6 46 78.3
Nitab4.5_0008987g0050 Nicotiana tabacum HOM05D005857 ORTHO05D007193 2.1e-14 82.0 65 58.5
BolC8t49293H Brassica oleracea HOM05D005857 ORTHO05D007193 1.0e-13 79.7 37 94.6
BcaB08g35768 Brassica carinata HOM05D005857 ORTHO05D007193 1.3e-13 79.3 44 90.9
Phvul.003G091000 Phaseolus vulgaris HOM05D005857 ORTHO05D007193 1.8e-13 79.0 67 58.2
Psat4g149960 Pisum sativum HOM05D005857 ORTHO05D007193 2.3e-13 78.6 57 66.7
Nitab4.5_0004030g0040 Nicotiana tabacum HOM05D005857 ORTHO05D007193 5.6e-12 73.9 52 63.5
Zm00001eb182520 Zea mays HOM05D005857 ORTHO05D007193 1.4e-10 69.3 58 50.0
Zm00001eb353890 Zea mays HOM05D005857 ORTHO05D007193 3.1e-10 68.2 50 58.0
Pp3c9_5250 Physcomitrium patens HOM05D005857 ORTHO05D007193 6.9e-10 67.0 59 50.8
Zm00001eb203220 Zea mays HOM05D005857 ORTHO05D007193 5.8e-09 63.9 51 49.0
Zm00001eb203730 Zea mays HOM05D005857 ORTHO05D007193 1.7e-08 62.4 50 48.0
GSVIVG01023132001 Vitis vinifera HOM05D005857 ORTHO05D007193 2.2e-08 62.0 30 83.3
Pp3c15_3960 Physcomitrium patens HOM05D005857 ORTHO05D007193 1.9e-07 58.9 58 48.3
AagrBONN_evm.TU.Sc2ySwM_369.408 Anthoceros agrestis HOM05D005857 ORTHO05D007193 4.2e-07 57.8 56 50.0
Medtr2g036340 Medicago truncatula HOM05D005857 ORTHO05D007193 9.3e-07 56.6 60 46.7
Medtr8g046930 Medicago truncatula HOM05D005857 ORTHO05D007193 9.3e-07 56.6 60 46.7
Mapoly0052s0008 Marchantia polymorpha HOM05D005857 ORTHO05D007193 2.7e-06 55.1 57 47.4
Os07g0175750 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 4.6e-06 54.3 47 46.8


User provided reference genes

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