Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g12290 Schrenkiella parvula HOM05D007623 ORTHO05D009641 9.0e-159 565.1 449 100.0
AL1G25410 Arabidopsis lyrata HOM05D007623 ORTHO05D009641 1.2e-126 458.4 279 81.4
BcaC05g25269 Brassica carinata HOM05D007623 ORTHO05D009641 7.7e-126 455.7 276 81.2
Carub.0001s1335 Capsella rubella HOM05D007623 ORTHO05D009641 5.1e-122 443.0 279 79.6
BcaB02g06459 Brassica carinata HOM05D007623 ORTHO05D009641 1.1e-121 441.8 277 80.5
Thhalv10009738m.g Eutrema salsugineum HOM05D007623 ORTHO05D009641 2.5e-121 440.7 279 79.9
A06p09730 Brassica napus HOM05D007623 ORTHO05D009641 1.8e-119 434.5 279 78.9
BraA06t24162Z Brassica rapa HOM05D007623 ORTHO05D009641 1.8e-119 434.5 279 79.2
C05p11430 Brassica napus HOM05D007623 ORTHO05D009641 1.5e-118 431.4 276 77.9
BolC5t29896H Brassica oleracea HOM05D007623 ORTHO05D009641 8.8e-114 415.6 276 75.7
Aa31LG7G1940 Aethionema arabicum HOM05D007623 ORTHO05D009641 7.7e-110 402.5 283 71.0
THA.LOC104805220 Tarenaya hassleriana HOM05D007623 ORTHO05D009641 2.4e-103 380.9 281 69.0
Thecc.02G321100 Theobroma cacao HOM05D007623 ORTHO05D009641 2.6e-65 254.6 282 48.9
Cfa008839 Carpinus fangiana HOM05D007623 ORTHO05D009641 9.8e-65 252.7 269 49.4
Haze_11851 Corylus avellana HOM05D007623 ORTHO05D009641 2.9e-64 251.1 269 49.8
Gorai.005G147900 Gossypium raimondii HOM05D007623 ORTHO05D009641 6.4e-64 250.0 282 48.2
CiPaw.06G095500 Carya illinoinensis HOM05D007623 ORTHO05D009641 1.4e-63 248.8 268 48.9
Gohir.A03G106900 Gossypium hirsutum HOM05D007623 ORTHO05D009641 1.9e-63 248.4 282 47.9
ClCG05G023480 Citrullus lanatus HOM05D007623 ORTHO05D009641 5.4e-63 246.9 272 47.8
COL.COLO4_27779 Corchorus olitorius HOM05D007623 ORTHO05D009641 4.6e-62 243.8 227 53.3
Dinv34009 Davidia involucrata HOM05D007623 ORTHO05D009641 2.5e-60 238.0 267 46.4
CANSAT64G0130 Cannabis sativa HOM05D007623 ORTHO05D009641 5.6e-60 236.9 269 46.5
CsaV3_3G030580 Cucumis sativus L. HOM05D007623 ORTHO05D009641 9.5e-60 236.1 262 48.1
MELO3C026661.2 Cucumis melo HOM05D007623 ORTHO05D009641 1.6e-59 235.3 262 47.7
GSVIVG01010112001 Vitis vinifera HOM05D007623 ORTHO05D009641 3.6e-59 234.2 266 47.4
MD16G1054700 Malus domestica HOM05D007623 ORTHO05D009641 1.8e-58 231.9 281 44.5
Manes.14G091100 Manihot esculenta HOM05D007623 ORTHO05D009641 8.9e-58 229.6 270 45.9
Prupe.2G062100 Prunus persica HOM05D007623 ORTHO05D009641 1.5e-57 228.8 281 44.1
Sabra10G0105800 Salix brachista HOM05D007623 ORTHO05D009641 2.2e-56 224.9 226 47.8
FAN12G1349 Fragaria x ananassa HOM05D007623 ORTHO05D009641 4.9e-56 223.8 273 43.2
CARHR014000 Cardamine hirsuta HOM05D007623 ORTHO05D009641 8.3e-56 223.0 158 74.7
FvH4_4g29120 Fragaria vesca HOM05D007623 ORTHO05D009641 8.3e-56 223.0 273 43.2
Sed0026487 Sechium edule HOM05D007623 ORTHO05D009641 4.1e-55 220.7 265 45.7
Atru.chr11.1545 Acer truncatum HOM05D007623 ORTHO05D009641 7.1e-55 219.9 290 43.1
AT1G13630 Arabidopsis thaliana HOM05D007623 ORTHO05D009641 1.6e-54 218.8 126 84.1
FAN17G1802 Fragaria x ananassa HOM05D007623 ORTHO05D009641 1.3e-53 215.7 273 42.1
SHI04831 Sapria himalayana HOM05D007623 ORTHO05D009641 1.7e-53 215.3 226 46.9
Hund25149 Selenicereus undatus HOM05D007623 ORTHO05D009641 3.0e-53 214.5 293 43.3
FAN22G0497 Fragaria x ananassa HOM05D007623 ORTHO05D009641 3.9e-53 214.2 273 41.8
RcHm_v2.0_Chr4g0437181 Rosa chinensis HOM05D007623 ORTHO05D009641 1.9e-52 211.8 263 43.7
EL10Ac6g14659 Beta vulgaris HOM05D007623 ORTHO05D009641 3.6e-51 207.6 284 41.9
Actinidia31923 Actinidia chinensis HOM05D007623 ORTHO05D009641 4.7e-51 207.2 279 44.1
Lj6A773T130 Lonicera japonica HOM05D007623 ORTHO05D009641 3.1e-50 204.5 269 42.4
vmacro01293 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 5.2e-50 203.8 208 50.0
Lsat_1_v5_gn_6_31920 Lactuca sativa HOM05D007623 ORTHO05D009641 9.9e-49 199.5 274 43.1
Actinidia24041 Actinidia chinensis HOM05D007623 ORTHO05D009641 2.2e-48 198.4 271 44.3
Aqoxy1G01216 Aquilegia oxysepala HOM05D007623 ORTHO05D009641 2.2e-48 198.4 254 39.8
AUR62007860 Chenopodium quinoa HOM05D007623 ORTHO05D009641 8.4e-48 196.4 262 40.1
AUR62003048 Chenopodium quinoa HOM05D007623 ORTHO05D009641 2.4e-47 194.9 268 40.7
Prupe.7G020300 Prunus persica HOM05D007623 ORTHO05D009641 2.4e-47 194.9 199 50.8
Nn1g03057 Nelumbo nucifera HOM05D007623 ORTHO05D009641 3.2e-47 194.5 273 39.2
CSS0048304 Camellia sinensis var. sinensis HOM05D007623 ORTHO05D009641 1.1e-44 186.0 210 45.7
CSS0034887 Camellia sinensis var. sinensis HOM05D007623 ORTHO05D009641 3.3e-44 184.5 210 45.7
Rhsim12G0070700 Rhododendron simsii HOM05D007623 ORTHO05D009641 7.3e-44 183.3 190 47.9
PGSC0003DMG400019642 Solanum tuberosum HOM05D007623 ORTHO05D009641 4.8e-43 180.6 209 41.1
Ah.03g137460 Amaranthus hybridus HOM05D007623 ORTHO05D009641 1.1e-42 179.5 277 39.4
Sc11g0002680 Simmondsia chinensis HOM05D007623 ORTHO05D009641 1.1e-42 179.5 169 51.5
Migut.E00256 Erythranthe guttata HOM05D007623 ORTHO05D009641 6.9e-42 176.8 270 41.1
Oeu019601.2 Olea europaea HOM05D007623 ORTHO05D009641 1.5e-41 175.6 193 46.6
HanXRQChr08g0215011 Helianthus annuus HOM05D007623 ORTHO05D009641 4.4e-41 174.1 281 37.4
Sopen00g002400 Solanum pennellii HOM05D007623 ORTHO05D009641 4.4e-41 174.1 209 39.7
Cc11_g11460 Coffea canephora HOM05D007623 ORTHO05D009641 9.9e-41 172.9 221 42.5
DCAR_023738 Daucus carota HOM05D007623 ORTHO05D009641 1.1e-39 169.5 226 44.2
CARHR013990 Cardamine hirsuta HOM05D007623 ORTHO05D009641 3.2e-39 167.9 93 86.0
ECA233G1899 Erigeron canadensis HOM05D000630 ORTHO05D001413 1.6e-38 165.6 196 44.9
BcaB08g34697 Brassica carinata HOM05D007623 ORTHO05D009641 3.9e-37 161.0 96 84.4
SGA_v2.0_scaffold287G47196 Striga asiatica HOM05D007623 ORTHO05D009641 1.3e-35 156.0 191 40.3
MD13G1055600 Malus domestica HOM05D007623 ORTHO05D009641 9.0e-34 149.8 138 52.9
ATR0048G027 Amborella trichopoda HOM05D007623 ORTHO05D009641 7.6e-33 146.7 157 45.9
Cpa.g.c32845 Carica papaya HOM05D007623 ORTHO05D009641 1.3e-27 129.4 153 45.1
BcaB06g28282 Brassica carinata HOM05D007623 ORTHO05D009641 2.1e-27 128.6 93 73.1
Lsat_1_v5_gn_3_22320 Lactuca sativa HOM05D007623 ORTHO05D009641 2.4e-26 125.2 193 42.5
HPP92_001379 Vanilla planifolia HOM05D007623 ORTHO05D009641 2.9e-24 118.2 163 38.0
Gohir.D02G132000 Gossypium hirsutum HOM05D007623 ORTHO05D009641 3.5e-22 111.3 106 54.7
SEGI_39043 Sequoiadendron giganteum HOM05D007623 ORTHO05D009641 3.5e-22 111.3 177 35.0
Peaxi162Scf00188g01015 Petunia axillaris HOM05D007623 ORTHO05D009641 2.5e-20 105.1 97 51.5
Ciclev10031004m.g Citrus clementina HOM05D007623 ORTHO05D009641 4.3e-20 104.4 96 50.0
Zm00001eb045730 Zea mays HOM05D007623 ORTHO05D009641 4.3e-20 104.4 136 38.2
TAR374G0443 Trochodendron aralioides HOM05D007623 ORTHO05D009641 3.1e-18 98.2 97 46.4
Nitab4.5_0000259g0170 Nicotiana tabacum HOM05D007623 ORTHO05D009641 3.4e-17 94.7 97 46.4
CAN.G680.12 Capsicum annuum HOM05D007623 ORTHO05D009641 5.8e-17 94.0 95 47.4
Nitab4.5_0011373g0020 Nicotiana tabacum HOM05D007623 ORTHO05D009641 2.2e-16 92.0 97 45.4
TAR374G1445 Trochodendron aralioides HOM05D007623 ORTHO05D009641 7.1e-15 87.0 134 35.1
MELO3C035731.2 Cucumis melo HOM05D002890 ORTHO05D009847 4.3e-12 77.8 187 28.9
CSS0001323 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D009847 2.2e-11 75.5 187 28.9
ClCG03G004730 Citrullus lanatus HOM05D002890 ORTHO05D009847 2.2e-11 75.5 187 28.3
Haze_20537 Corylus avellana HOM05D002890 ORTHO05D009847 2.8e-11 75.1 188 29.3
Lalb_Chr01g0001971 Lupinus albus HOM05D002890 ORTHO05D009847 2.8e-11 75.1 187 27.8
TWI63G0498 Tripterygium wilfordii HOM05D002890 ORTHO05D009847 3.7e-11 74.7 199 28.1
Sed0010805 Sechium edule HOM05D002890 ORTHO05D009847 8.2e-11 73.6 187 27.8
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 9.0e-10 70.1 187 28.3
Lalb_Chr02g0154661 Lupinus albus HOM05D007291 ORTHO05D009038 9.0e-10 70.1 202 26.2
COL.COLO4_31777 Corchorus olitorius HOM05D002890 ORTHO05D009847 1.2e-09 69.7 181 28.7
arahy.Tifrunner.gnm1.ann1.GQ8ZCN Arachis hypogaea HOM05D002890 ORTHO05D009847 2.0e-09 68.9 201 25.4
DCAR_003433 Daucus carota HOM05D007291 ORTHO05D009038 1.0e-08 66.6 166 27.1
Nn1g03517 Nelumbo nucifera HOM05D002890 ORTHO05D009847 1.7e-08 65.9 230 23.9
TAR624G0355 Trochodendron aralioides HOM05D002890 ORTHO05D009847 1.7e-08 65.9 168 27.4
Duzib235G0255 Durio zibethinus HOM05D002890 ORTHO05D009847 2.2e-08 65.5 168 29.2
Ah.10g029280 Amaranthus hybridus HOM05D007623 ORTHO05D009641 6.5e-08 63.9 151 31.8
Gorai.009G366400 Gossypium raimondii HOM05D007291 ORTHO05D009038 1.4e-07 62.8 179 25.1
Aqoxy3G02430 Aquilegia oxysepala HOM05D007291 ORTHO05D009038 1.9e-07 62.4 171 24.0
Haze_20536 Corylus avellana HOM05D002890 ORTHO05D009847 1.9e-07 62.4 153 29.4
Gohir.D05G340000 Gossypium hirsutum HOM05D007291 ORTHO05D009038 2.5e-07 62.0 185 24.9
CiPaw.09G092100 Carya illinoinensis HOM05D002890 ORTHO05D009847 3.2e-07 61.6 168 28.0
Gorai.010G180200 Gossypium raimondii HOM05D002890 ORTHO05D009847 3.2e-07 61.6 177 28.8
Hma1.2p1_0524F.1_g172380 Hydrangea macrophylla HOM05D007291 ORTHO05D009038 3.2e-07 61.6 162 24.7
Rhsim13G0211000 Rhododendron simsii HOM05D007455 ORTHO05D009431 3.2e-07 61.6 162 25.9
C05p09820 Brassica napus HOM05D002890 ORTHO05D009847 5.5e-07 60.8 164 26.8
Gohir.D06G154100 Gossypium hirsutum HOM05D002890 ORTHO05D009847 5.5e-07 60.8 177 28.8
Hma1.2p1_1840F.1_g304950 Hydrangea macrophylla HOM05D007291 ORTHO05D009038 5.5e-07 60.8 162 24.1
Gorai.009G365100 Gossypium raimondii HOM05D007291 ORTHO05D009038 7.2e-07 60.5 186 24.7
BcaC05g25040 Brassica carinata HOM05D002890 ORTHO05D009847 9.4e-07 60.1 193 26.9
SEGI_11241 Sequoiadendron giganteum HOM05D007496 ORTHO05D009479 9.4e-07 60.1 145 26.2
CSS0009024 Camellia sinensis var. sinensis HOM05D007956 ORTHO05D009038 6.1e-06 57.4 150 22.7
CsaV3_1G043280 Cucumis sativus L. HOM05D007455 ORTHO05D009431 6.1e-06 57.4 157 25.5
Sc16g0011110 Simmondsia chinensis HOM05D007455 ORTHO05D009431 6.1e-06 57.4 161 25.5
Lj4g0000542 Lotus japonicus HOM05D002890 ORTHO05D009847 7.9e-06 57.0 198 24.2


User provided reference genes

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