Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g12140 Schrenkiella parvula HOM05D004824 ORTHO05D017526 6.2e-269 931.0 826 100.0
AT1G13800 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 1.4e-159 567.8 795 72.7
A06p09890 Brassica napus HOM05D004824 ORTHO05D003903 2.7e-155 553.5 569 60.6
BcaC05g25286 Brassica carinata HOM05D004824 ORTHO05D003903 3.9e-154 549.7 572 61.5
C05p11650 Brassica napus HOM05D004824 ORTHO05D003903 3.9e-154 549.7 572 61.5
BolC5t29912H Brassica oleracea HOM05D004824 ORTHO05D003903 3.9e-154 549.7 572 61.5
CARHR014190 Cardamine hirsuta HOM05D004824 ORTHO05D003903 3.3e-145 520.0 635 70.6
BraA06t24177Z Brassica rapa HOM05D004824 ORTHO05D003903 1.3e-144 518.1 545 59.8
AL1G25600 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 2.2e-141 507.3 795 69.9
BcaB02g06478 Brassica carinata HOM05D004824 ORTHO05D003903 2.2e-136 490.7 590 64.7
Carub.0001s1352 Capsella rubella HOM05D004824 ORTHO05D017526 8.5e-125 452.2 333 70.3
Thhalv10009810m.g Eutrema salsugineum HOM05D004824 ORTHO05D017526 1.8e-119 434.5 591 54.0
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 2.1e-99 367.9 603 40.3
BcaB08g37396 Brassica carinata HOM05D004824 ORTHO05D017526 1.7e-69 268.5 611 52.2
Carub.0004s0722 Capsella rubella HOM05D004824 ORTHO05D003903 3.4e-65 254.2 634 47.0
Aa31LG5G8990 Aethionema arabicum HOM05D004824 ORTHO05D003903 2.3e-61 241.5 591 56.3
AL4G19980 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 8.7e-61 239.6 634 53.6
Thhalv10001906m.g Eutrema salsugineum HOM05D004824 ORTHO05D003903 2.5e-60 238.0 646 43.5
Sp4g08720 Schrenkiella parvula HOM05D004824 ORTHO05D003903 7.6e-57 226.5 654 41.1
AT2G26790 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 1.2e-54 219.2 636 53.0
Carub.0001s1351 Capsella rubella HOM05D004824 ORTHO05D003903 4.5e-49 200.7 280 72.1
BraA07t29506Z Brassica rapa HOM05D004824 ORTHO05D003903 1.9e-44 185.3 334 38.0
BolC4t23963H Brassica oleracea HOM05D004824 ORTHO05D003903 3.3e-44 184.5 334 38.3
BcaC02g10842 Brassica carinata HOM05D004824 ORTHO05D003903 7.4e-44 183.3 334 38.3
C04p24590 Brassica napus HOM05D004824 ORTHO05D003903 2.1e-43 181.8 334 38.0
A07p17870 Brassica napus HOM05D004824 ORTHO05D003903 1.8e-42 178.7 333 37.2
CARHR014470 Cardamine hirsuta HOM05D004824 ORTHO05D017526 1.8e-42 178.7 172 62.8
AL1G25960 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 5.8e-33 147.1 172 52.3
THA.LOC104816942 Tarenaya hassleriana HOM05D004824 ORTHO05D003903 4.3e-28 131.0 167 44.3
BcaC07g41781 Brassica carinata HOM05D004824 ORTHO05D017526 2.2e-24 118.6 128 57.8
Peaxi162Scf00222g00211 Petunia axillaris HOM05D004824 ORTHO05D003903 1.2e-22 112.8 294 28.9
BraA09t41683Z Brassica rapa HOM05D004824 ORTHO05D017526 3.9e-21 107.8 125 55.2
A09p63320 Brassica napus HOM05D004824 ORTHO05D017526 2.0e-20 105.5 125 54.4
vmacro09539 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 2.8e-19 101.7 269 28.3
CARHR118970 Cardamine hirsuta HOM05D004824 ORTHO05D003903 3.7e-19 101.3 124 45.2
TWI79G0695 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 6.3e-19 100.5 348 25.0
Manes.10G060400 Manihot esculenta HOM05D004824 ORTHO05D003903 1.8e-18 99.0 165 37.6
Cpa.g.sc743.5 Carica papaya HOM05D004824 ORTHO05D003903 2.6e-17 95.1 168 35.1
MSTRG.2666 Avicennia marina HOM05D004824 ORTHO05D003903 3.4e-17 94.7 132 38.6
Nn2g15691 Nelumbo nucifera HOM05D004824 ORTHO05D003903 4.5e-17 94.4 180 38.9
CsaV3_1G028470 Cucumis sativus L. HOM05D004824 ORTHO05D003903 5.9e-17 94.0 305 26.9
BolC8t52358H Brassica oleracea HOM05D004824 ORTHO05D017526 2.9e-16 91.7 84 59.5
MELO3C010266.2 Cucumis melo HOM05D004824 ORTHO05D003903 3.8e-16 91.3 268 27.6
Solyc05g012920.3 Solanum lycopersicum HOM05D004824 ORTHO05D003903 5.0e-16 90.9 141 34.8
MD10G1219600 Malus domestica HOM05D004824 ORTHO05D003903 8.5e-16 90.1 168 33.9
Sopen05g007720 Solanum pennellii HOM05D004824 ORTHO05D003903 8.5e-16 90.1 141 34.8
PGSC0003DMG400028391 Solanum tuberosum HOM05D004824 ORTHO05D003903 1.1e-15 89.7 141 34.8
Rhsim04G0218500 Rhododendron simsii HOM05D004824 ORTHO05D003903 2.5e-15 88.6 205 30.7
Prupe.4G124300 Prunus persica HOM05D004824 ORTHO05D003903 3.2e-15 88.2 128 39.8
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 3.2e-15 88.2 194 31.4
MD05G1241200 Malus domestica HOM05D004824 ORTHO05D003903 4.2e-15 87.8 128 39.1
CAN.G964.21 Capsicum annuum HOM05D004824 ORTHO05D003903 5.5e-15 87.4 130 36.9
Sed0004559 Sechium edule HOM05D004824 ORTHO05D003903 1.2e-14 86.3 155 32.3
Cc02_g09320 Coffea canephora HOM05D004824 ORTHO05D003903 1.6e-14 85.9 166 33.1
TAR623G1477 Trochodendron aralioides HOM05D004824 ORTHO05D003903 2.1e-14 85.5 127 36.2
Migut.D01549 Erythranthe guttata HOM05D004824 ORTHO05D003903 3.6e-14 84.7 259 26.6
Hma1.2p1_0098F.1_g048160 Hydrangea macrophylla HOM05D004824 ORTHO05D003903 3.6e-14 84.7 131 35.1
QL05p080937 Quercus lobata HOM05D004824 ORTHO05D003903 3.6e-14 84.7 126 38.1
SHI24599 Sapria himalayana HOM05D008459 ORTHO05D003903 4.7e-14 84.3 167 30.5
TWI63G0852 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 4.7e-14 84.3 128 34.4
Gohir.D04G027800 Gossypium hirsutum HOM05D004824 ORTHO05D003903 6.1e-14 84.0 137 35.8
Dinv16084 Davidia involucrata HOM05D004824 ORTHO05D003903 7.9e-14 83.6 166 33.7
Gohir.D04G027600 Gossypium hirsutum HOM05D004824 ORTHO05D003903 7.9e-14 83.6 137 35.0
Gorai.012G030300 Gossypium raimondii HOM05D004824 ORTHO05D003903 7.9e-14 83.6 137 35.0
Gorai.N017300 Gossypium raimondii HOM05D004824 ORTHO05D003903 7.9e-14 83.6 137 35.0
SalBow7G1004 Salvia bowleyana HOM05D004824 ORTHO05D003903 1.0e-13 83.2 129 37.2
Duzib147G0012 Durio zibethinus HOM05D004824 ORTHO05D003903 3.0e-13 81.6 159 29.6
Gohir.A05G388900 Gossypium hirsutum HOM05D004824 ORTHO05D003903 3.0e-13 81.6 133 34.6
Thecc.01G121800 Theobroma cacao HOM05D004824 ORTHO05D003903 3.0e-13 81.6 130 35.4
Thhalv10009488m.g Eutrema salsugineum HOM05D004824 ORTHO05D031114 3.9e-13 81.3 76 56.6
vmacro04677 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 5.1e-13 80.9 293 23.5
CSS0029730 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 6.7e-13 80.5 147 29.9
Nitab4.5_0000391g0190 Nicotiana tabacum HOM05D004824 ORTHO05D003903 6.7e-13 80.5 137 33.6
Hund12341 Selenicereus undatus HOM05D004824 ORTHO05D003903 6.7e-13 80.5 126 34.1
CSS0000296 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 8.8e-13 80.1 132 32.6
Actinidia04364 Actinidia chinensis HOM05D004824 ORTHO05D003903 1.5e-12 79.3 128 32.0
ClCG06G012000 Citrullus lanatus HOM05D004824 ORTHO05D003903 1.5e-12 79.3 156 30.1
GSVIVG01015849001 Vitis vinifera HOM05D004824 ORTHO05D003903 4.4e-12 77.8 176 28.4
Potri.004G066600 Populus trichocarpa HOM05D004824 ORTHO05D003903 9.7e-12 76.6 128 35.2
Haze_18457 Corylus avellana HOM05D004824 ORTHO05D003903 2.2e-11 75.5 146 30.1
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 3.7e-11 74.7 167 29.3
CARHR257510 Cardamine hirsuta HOM05D004824 ORTHO05D003903 3.7e-11 74.7 106 39.6
FAN25G3679 Fragaria x ananassa HOM05D004824 ORTHO05D003903 1.4e-10 72.8 122 37.7
Manes.02G087700 Manihot esculenta HOM05D004824 ORTHO05D003903 1.4e-10 72.8 183 31.1
Sc12g0010940 Simmondsia chinensis HOM05D004824 ORTHO05D003903 1.4e-10 72.8 173 26.0
FvH4_3g13690 Fragaria vesca HOM05D004824 ORTHO05D003903 1.8e-10 72.4 122 37.7
FAN11G3130 Fragaria x ananassa HOM05D004824 ORTHO05D003903 1.8e-10 72.4 122 37.7
BcaB01g00827 Brassica carinata HOM05D002460 ORTHO05D002716 2.4e-10 72.0 274 26.3
CANSAT11G2445 Cannabis sativa HOM05D004824 ORTHO05D003903 3.1e-10 71.6 149 28.9
RcHm_v2.0_Chr5g0022931 Rosa chinensis HOM05D004824 ORTHO05D003903 3.1e-10 71.6 128 35.9
MBI06_g07794_MAGBIO Magnolia biondii HOM05D004824 ORTHO05D003903 4.1e-10 71.2 165 29.7
Lj1g0000290 Lotus japonicus HOM05D004824 ORTHO05D003903 5.3e-10 70.9 129 30.2
CiPaw.15G110500 Carya illinoinensis HOM05D004824 ORTHO05D003903 7.0e-10 70.5 129 31.8
Sabra04G0044400 Salix brachista HOM05D004824 ORTHO05D003903 7.0e-10 70.5 128 33.6
Lj1g0015996 Lotus japonicus HOM05D000005 ORTHO05D000012 1.2e-09 69.7 170 28.8
CAN.G1642.5 Capsicum annuum HOM05D004824 ORTHO05D003903 2.0e-09 68.9 172 32.0
Medtr3g091500 Medicago truncatula HOM05D004824 ORTHO05D003903 2.6e-09 68.6 293 23.2
CANSAT21G1575 Cannabis sativa HOM05D004824 ORTHO05D003903 4.5e-09 67.8 131 32.1
EL10Ac8g19216 Beta vulgaris HOM05D004824 ORTHO05D003903 5.9e-09 67.4 121 32.2
ATR0807G095 Amborella trichopoda HOM05D004824 ORTHO05D003903 7.7e-09 67.0 132 33.3
CARHR258930 Cardamine hirsuta HOM05D004824 ORTHO05D003903 1.3e-08 66.2 90 42.2
Ciclev10011094m.g Citrus clementina HOM05D004824 ORTHO05D003903 1.7e-08 65.9 127 29.9
Eucgr.F01187 Eucalyptus grandis HOM05D004824 ORTHO05D003903 2.2e-08 65.5 101 36.6
HanXRQChr12g0366191 Helianthus annuus HOM05D004824 ORTHO05D003903 2.2e-08 65.5 130 30.0
TPR.G25583 Trifolium pratense HOM05D004824 ORTHO05D003903 2.9e-08 65.1 174 25.9
Ca_06791_v3 Cicer arietinum L. HOM05D004824 ORTHO05D003903 3.8e-08 64.7 176 27.3
COL.COLO4_22429 Corchorus olitorius HOM05D000173 ORTHO05D003903 3.8e-08 64.7 95 40.0
Ciclev10014253m.g Citrus clementina HOM05D004824 ORTHO05D003903 5.0e-08 64.3 129 30.2
AUR62033969 Chenopodium quinoa HOM05D004824 ORTHO05D003903 1.1e-07 63.2 146 27.4
Nitab4.5_0008978g0030 Nicotiana tabacum HOM05D004824 ORTHO05D003903 1.1e-07 63.2 106 37.7
TPR.G25560 Trifolium pratense HOM05D004824 ORTHO05D003903 1.1e-07 63.2 174 24.1
Lalb_Chr10g0093361 Lupinus albus HOM05D004824 ORTHO05D003903 1.5e-07 62.8 116 33.6
FAN16G0917 Fragaria x ananassa HOM05D001160 ORTHO05D001092 1.9e-07 62.4 97 38.1
Medtr7g011500 Medicago truncatula HOM05D004824 ORTHO05D003903 3.2e-07 61.6 170 27.1
AUR62008612 Chenopodium quinoa HOM05D004824 ORTHO05D003903 5.5e-07 60.8 287 21.3
ECA246G3641 Erigeron canadensis HOM05D005906 ORTHO05D007359 9.4e-07 60.1 114 32.5
Lsat_1_v5_gn_0_9380 Lactuca sativa HOM05D004824 ORTHO05D003903 9.4e-07 60.1 307 21.8
Lsat_1_v5_gn_8_33440 Lactuca sativa HOM05D004824 ORTHO05D003903 1.2e-06 59.7 170 24.7
ECA246G0928 Erigeron canadensis HOM05D004824 ORTHO05D003903 2.1e-06 58.9 91 36.3
HanXRQChr17g0540701 Helianthus annuus HOM05D004824 ORTHO05D003903 2.7e-06 58.5 125 36.0
CDE04G1389 Ceratophyllum demersum HOM05D004824 ORTHO05D003903 3.6e-06 58.2 155 29.7
AUR62033164 Chenopodium quinoa HOM05D004824 ORTHO05D003903 3.6e-06 58.2 297 19.2
HanXRQChr13g0425261 Helianthus annuus HOM05D004824 ORTHO05D003903 6.1e-06 57.4 114 32.5


User provided reference genes

Program Settings