Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 8.1e-77 290.4 156 100.0
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 1.7e-58 229.6 157 82.2
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 4.9e-58 228.0 156 80.8
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 1.0e-55 220.3 157 78.3
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 1.9e-54 216.1 163 76.1
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 1.3e-53 213.4 160 76.9
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 2.8e-53 212.2 157 76.4
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 1.2e-51 206.8 156 75.0
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 3.9e-47 191.8 156 71.2
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 6.7e-47 191.0 118 87.3
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 1.1e-44 183.7 110 90.9
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 2.0e-43 179.5 159 67.9
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 1.7e-42 176.4 127 77.2
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 4.9e-42 174.9 127 76.4
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 4.9e-42 174.9 127 76.4
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 1.0e-39 167.2 180 57.8
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 4.3e-38 161.8 159 64.2
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 7.4e-38 161.0 178 58.4
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 7.4e-38 161.0 178 58.4
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 7.4e-38 161.0 178 58.4
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 7.4e-38 161.0 178 58.4
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 2.2e-37 159.5 181 59.1
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 4.8e-37 158.3 178 57.9
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 6.3e-37 157.9 184 58.2
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 1.4e-36 156.8 178 56.7
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 2.4e-36 156.0 172 58.7
BraA08t35141Z Brassica rapa HOM05D003853 ORTHO05D004171 4.1e-36 155.2 125 72.8
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 2.6e-35 152.5 169 59.8
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 2.6e-35 152.5 169 59.8
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 2.6e-35 152.5 185 56.2
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 5.9e-35 151.4 117 76.1
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 1.7e-34 149.8 188 56.4
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 1.7e-34 149.8 174 56.9
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 1.7e-34 149.8 190 55.3
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 2.2e-34 149.4 174 56.9
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 8.5e-34 147.5 169 59.2
A08p32170 Brassica napus HOM05D003853 ORTHO05D004171 7.2e-33 144.4 150 61.3
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 2.0e-30 136.3 194 50.0
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 8.8e-23 110.9 148 51.4
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 1.1e-22 110.5 139 50.4
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 9.7e-22 107.5 131 51.1
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 1.7e-21 106.7 128 50.0
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 2.2e-21 106.3 147 46.3
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 2.2e-21 106.3 129 48.8
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 3.7e-21 105.5 127 52.0
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 3.7e-21 105.5 134 50.7
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 3.7e-21 105.5 144 47.2
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 4.8e-21 105.1 118 51.7
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 4.8e-21 105.1 128 49.2
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 4.8e-21 105.1 164 44.5
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 6.3e-21 104.8 147 46.9
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 1.4e-20 103.6 130 48.5
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 1.4e-20 103.6 130 48.5
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 1.4e-20 103.6 135 49.6
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 2.4e-20 102.8 138 45.7
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 2.4e-20 102.8 138 45.7
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 4.1e-20 102.1 129 48.8
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 1.5e-19 100.1 140 46.4
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 2.0e-19 99.8 129 51.9
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 2.6e-19 99.4 138 47.1
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 3.5e-19 99.0 191 39.8
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 1.0e-18 97.4 129 48.1
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 1.3e-18 97.1 133 48.9
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 1.3e-18 97.1 120 50.8
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 1.3e-18 97.1 138 44.9
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 2.9e-18 95.9 127 47.2
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 6.5e-18 94.7 131 46.6
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 8.5e-18 94.4 140 45.7
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 1.1e-17 94.0 154 40.3
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 1.4e-17 93.6 139 46.0
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 1.4e-17 93.6 148 43.9
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 1.9e-17 93.2 157 39.5
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 1.9e-17 93.2 87 60.9
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 1.9e-17 93.2 160 41.2
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.5e-17 92.8 131 45.0
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 2.5e-17 92.8 161 40.4
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 2.5e-17 92.8 147 42.2
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 3.2e-17 92.4 161 41.0
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 5.5e-17 91.7 152 39.5
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 5.5e-17 91.7 140 45.7
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 9.4e-17 90.9 149 46.3
THA.LOC104805946 Tarenaya hassleriana HOM05D003853 ORTHO05D004171 9.4e-17 90.9 84 59.5
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.6e-16 90.1 121 47.1
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 2.1e-16 89.7 138 47.1
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 2.1e-16 89.7 138 44.9
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 4.7e-16 88.6 132 49.2
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 6.1e-16 88.2 73 64.4
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 6.1e-16 88.2 138 44.9
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 6.1e-16 88.2 153 43.8
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 8.0e-16 87.8 156 42.3
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 1.0e-15 87.4 134 41.8
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 1.0e-15 87.4 134 41.8
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 2.3e-15 86.3 162 41.4
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 3.0e-15 85.9 83 59.0
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 3.9e-15 85.5 123 45.5
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 5.2e-15 85.1 148 41.2
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 6.7e-15 84.7 159 37.7
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 8.8e-15 84.3 114 47.4
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 8.8e-15 84.3 126 44.4
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 1.5e-14 83.6 70 62.9
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 3.3e-14 82.4 154 38.3
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 3.3e-14 82.4 128 44.5
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 4.4e-14 82.0 172 41.3
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 5.7e-14 81.6 168 37.5
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 5.7e-14 81.6 134 39.6
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 7.4e-14 81.3 157 40.8
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 7.4e-14 81.3 119 46.2
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 9.7e-14 80.9 175 37.7
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 9.7e-14 80.9 130 46.2
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 2.2e-13 79.7 142 39.4
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 2.2e-13 79.7 140 38.6
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 2.8e-13 79.3 137 40.9
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 2.8e-13 79.3 86 55.8
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 3.7e-13 79.0 146 41.8
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 4.8e-13 78.6 115 41.7
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 4.8e-13 78.6 165 38.8
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 6.3e-13 78.2 172 36.0
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 8.2e-13 77.8 78 53.8
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 8.2e-13 77.8 136 41.2
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 1.1e-12 77.4 130 45.4
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 1.4e-12 77.0 125 45.6
HPP92_023625 Vanilla planifolia HOM05D003853 ORTHO05D004171 1.4e-12 77.0 140 37.9
CANSAT64G1198 Cannabis sativa HOM05D003853 ORTHO05D004171 1.8e-12 76.6 111 47.7
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 1.8e-12 76.6 137 40.9
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 2.4e-12 76.3 93 49.5
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 2.4e-12 76.3 163 40.5
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 3.1e-12 75.9 75 57.3
Lsat_1_v5_gn_3_56161 Lactuca sativa HOM05D003853 ORTHO05D004171 3.1e-12 75.9 76 53.9
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 7.0e-12 74.7 76 56.6
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 7.0e-12 74.7 72 58.3
Prupe.1G282500 Prunus persica HOM05D003853 ORTHO05D004171 9.1e-12 74.3 128 40.6
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 1.6e-11 73.6 107 45.8
Ah.03g139150 Amaranthus hybridus HOM05D003853 ORTHO05D004171 2.0e-11 73.2 124 46.8
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 2.0e-11 73.2 170 38.2
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 3.5e-11 72.4 82 51.2
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 5.9e-11 71.6 100 43.0
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 5.9e-11 71.6 71 57.7
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 5.9e-11 71.6 71 57.7
HanXRQChr15g0477051 Helianthus annuus HOM05D003853 ORTHO05D004171 1.0e-10 70.9 75 50.7
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 1.3e-10 70.5 106 47.2
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 2.9e-10 69.3 162 37.7
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 3.8e-10 68.9 67 56.7
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 5.0e-10 68.6 89 50.6
Cc11_g12330 Coffea canephora HOM05D003853 ORTHO05D004171 6.5e-10 68.2 167 37.7
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 6.5e-10 68.2 87 48.3
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.1e-09 67.4 82 43.9
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 1.1e-09 67.4 176 34.1
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 1.1e-09 67.4 78 50.0
Zm00001eb334140 Zea mays HOM05D003853 ORTHO05D004171 1.1e-09 67.4 163 36.8
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.5e-09 67.0 128 39.8
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 1.9e-09 66.6 121 42.1
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 1.2e-08 63.9 126 36.5
Lj2g0020869 Lotus japonicus HOM05D003853 ORTHO05D004171 1.2e-08 63.9 110 41.8
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 1.2e-08 63.9 134 38.8
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.6e-08 63.5 128 43.0
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 1.6e-08 63.5 118 39.8
Manes.01G030000 Manihot esculenta HOM05D003853 ORTHO05D004171 2.1e-08 63.2 100 43.0
Lalb_Chr17g0341041 Lupinus albus HOM05D003853 ORTHO05D004171 4.7e-08 62.0 82 42.7
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 4.7e-08 62.0 73 52.1
MD16G1064200 Malus domestica HOM05D003853 ORTHO05D004171 1.0e-07 60.8 74 47.3
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.0e-07 60.8 82 50.0
Psat2g127960 Pisum sativum HOM05D003853 ORTHO05D004171 3.0e-07 59.3 94 42.6
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 5.2e-07 58.5 172 32.6
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 8.8e-07 57.8 89 46.1
Ca_04944_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 2.0e-06 56.6 81 44.4
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 3.3e-06 55.8 132 33.3
Medtr5g043660 Medicago truncatula HOM05D003853 ORTHO05D004171 4.4e-06 55.5 110 39.1
SEGI_07999 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 4.4e-06 55.5 78 47.4
SalBow8G0382 Salvia bowleyana HOM05D033521 ORTHO05D004171 9.7e-06 54.3 139 34.5
vmacro22463 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 9.7e-06 54.3 70 50.0


User provided reference genes

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