Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 5.0e-117 424.5 219 100.0
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 1.5e-89 333.2 228 77.6
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 5.3e-82 308.1 223 73.5
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 3.4e-81 305.4 226 72.6
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 7.6e-81 304.3 221 73.3
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 8.1e-75 284.3 225 71.6
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 9.3e-71 270.8 225 70.7
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 1.8e-69 266.5 228 68.4
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 2.5e-68 262.7 203 70.9
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 2.5e-68 262.7 203 70.9
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 4.3e-68 261.9 227 67.4
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 1.1e-66 257.3 222 68.0
BolC5t29729H Brassica oleracea HOM05D004123 ORTHO05D004768 7.1e-63 244.6 221 64.3
BraA06t24033Z Brassica rapa HOM05D004123 ORTHO05D004768 1.6e-62 243.4 221 64.7
C05p09900 Brassica napus HOM05D004123 ORTHO05D004768 2.7e-62 242.7 220 64.1
A06p08360 Brassica napus HOM05D004123 ORTHO05D004768 1.1e-60 237.3 221 63.8
BcaC07g38691 Brassica carinata HOM05D004123 ORTHO05D004768 4.1e-58 228.8 218 59.6
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 1.1e-47 194.1 214 57.9
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 1.4e-42 177.2 209 52.6
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 2.2e-35 153.3 225 50.2
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 1.7e-32 143.7 223 48.9
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 3.8e-32 142.5 220 47.7
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 3.8e-32 142.5 220 47.7
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 3.8e-32 142.5 220 47.7
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 1.5e-31 140.6 219 47.5
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 1.6e-30 137.1 227 46.7
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 3.6e-30 136.0 233 44.2
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.4e-29 134.0 225 47.1
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 1.4e-29 134.0 220 45.9
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 3.0e-29 132.9 222 47.3
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 6.7e-29 131.7 219 45.7
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 8.8e-29 131.3 219 47.5
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 8.8e-29 131.3 234 41.9
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 1.2e-28 131.0 221 43.4
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 1.5e-28 130.6 223 45.3
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 3.3e-28 129.4 237 42.2
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 9.7e-28 127.9 230 42.6
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 4.8e-27 125.6 226 46.5
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 8.2e-27 124.8 236 41.1
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 8.2e-27 124.8 227 44.9
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 1.1e-26 124.4 211 43.1
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 1.8e-26 123.6 218 43.6
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 2.4e-26 123.2 225 44.9
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 5.3e-26 122.1 224 47.3
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 1.2e-25 120.9 233 41.6
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 1.2e-25 120.9 194 47.9
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 1.2e-25 120.9 191 48.7
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 2.0e-25 120.2 231 42.4
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 3.5e-25 119.4 241 44.0
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 4.5e-25 119.0 227 45.4
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 5.9e-25 118.6 238 39.5
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 5.9e-25 118.6 238 39.5
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 5.9e-25 118.6 238 39.5
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 5.9e-25 118.6 232 44.0
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 1.0e-24 117.9 237 38.4
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 1.0e-24 117.9 232 43.5
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 1.0e-24 117.9 206 42.7
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 1.3e-24 117.5 239 41.0
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 1.3e-24 117.5 245 40.0
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 1.7e-24 117.1 225 39.1
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 2.2e-24 116.7 237 39.2
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 2.2e-24 116.7 235 38.7
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 2.9e-24 116.3 228 39.9
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 2.9e-24 116.3 225 40.9
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 2.9e-24 116.3 217 45.6
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 3.8e-24 115.9 230 47.0
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 5.0e-24 115.5 221 42.5
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 6.5e-24 115.2 232 43.5
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 6.5e-24 115.2 251 40.2
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 6.5e-24 115.2 228 45.6
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 6.5e-24 115.2 225 42.7
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 8.5e-24 114.8 191 45.0
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 1.5e-23 114.0 220 42.7
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 1.5e-23 114.0 212 40.1
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 1.9e-23 113.6 178 47.2
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 2.5e-23 113.2 235 38.7
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 3.2e-23 112.8 223 42.2
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 4.2e-23 112.5 245 41.2
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 5.5e-23 112.1 210 42.9
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 2.1e-22 110.2 242 39.3
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 6.1e-22 108.6 215 40.5
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 6.1e-22 108.6 211 42.2
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 6.1e-22 108.6 204 42.6
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 8.0e-22 108.2 135 54.8
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 1.8e-21 107.1 232 42.7
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 1.8e-21 107.1 190 42.6
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 3.0e-21 106.3 244 38.9
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 8.8e-21 104.8 238 43.7
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 8.8e-21 104.8 94 61.7
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 8.8e-21 104.8 237 40.5
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 8.8e-21 104.8 252 42.5
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 8.8e-21 104.8 216 42.6
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 1.2e-20 104.4 233 41.6
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 4.4e-20 102.4 112 54.5
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 4.4e-20 102.4 144 52.8
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 4.4e-20 102.4 190 45.8
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 9.8e-20 101.3 218 39.0
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 1.7e-19 100.5 237 37.6
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 1.7e-19 100.5 228 39.5
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 1.7e-19 100.5 216 42.1
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 1.7e-19 100.5 98 60.2
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 2.2e-19 100.1 186 38.7
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 2.8e-19 99.8 98 59.2
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 6.3e-19 98.6 279 35.8
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 6.3e-19 98.6 279 35.8
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 8.3e-19 98.2 165 41.2
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 1.1e-18 97.8 258 35.7
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 1.4e-18 97.4 203 41.9
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 1.4e-18 97.4 242 37.2
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 1.4e-18 97.4 115 48.7
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 1.4e-18 97.4 235 35.7
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 1.4e-18 97.4 91 60.4
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 2.4e-18 96.7 245 35.1
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 2.4e-18 96.7 286 35.0
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 2.4e-18 96.7 217 39.6
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 2.4e-18 96.7 243 37.9
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 3.1e-18 96.3 191 43.5
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 4.1e-18 95.9 180 38.3
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 1.2e-17 94.4 219 38.4
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 4.5e-17 92.4 267 37.8
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 1.3e-16 90.9 105 50.5
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 1.7e-16 90.5 131 48.1
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 2.9e-16 89.7 123 46.3
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 6.5e-16 88.6 97 54.6
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.5e-15 87.4 174 40.8
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 1.9e-15 87.0 137 43.1
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 1.9e-15 87.0 137 43.1
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 2.3e-13 80.1 87 57.5
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 4.0e-13 79.3 79 62.0
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 5.2e-13 79.0 223 35.0
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 5.2e-13 79.0 99 49.5
Potri.010G124200 Populus trichocarpa HOM05D004123 ORTHO05D004768 8.3e-11 71.6 150 40.0
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 3.1e-10 69.7 80 50.0
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 5.4e-10 68.9 121 37.2
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 9.2e-10 68.2 48 62.5
Cfa018590 Carpinus fangiana HOM05D004123 ORTHO05D004768 1.2e-09 67.8 149 39.6
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 1.2e-09 67.8 62 54.8
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 1.2e-09 67.8 62 54.8
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 7.8e-09 65.1 50 58.0
Lalb_Chr02g0145931 Lupinus albus HOM05D004123 ORTHO05D004768 1.0e-08 64.7 157 40.1
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 2.3e-08 63.5 61 52.5
Pp3c23_800 Physcomitrium patens HOM05D059517 ORTHO05D004768 8.6e-08 61.6 39 69.2
VMungo0720G2589 Vigna mungo HOM05D004123 ORTHO05D004768 1.1e-07 61.2 217 33.2
THA.LOC104805006 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 1.5e-07 60.8 238 35.3
Oeu059494.1 Olea europaea HOM05D001250 ORTHO05D000627 3.3e-07 59.7 107 33.6
DCAR_023643 Daucus carota HOM05D001250 ORTHO05D000627 4.3e-07 59.3 105 35.2
Oeu057738.1 Olea europaea HOM05D001250 ORTHO05D000627 4.3e-07 59.3 109 33.9
SEGI_26835 Sequoiadendron giganteum HOM05D004123 ORTHO05D004768 4.3e-07 59.3 60 46.7
C06p41650 Brassica napus HOM05D001250 ORTHO05D000627 7.3e-07 58.5 121 35.5
Nitab4.5_0003373g0030 Nicotiana tabacum HOM05D004123 ORTHO05D004768 9.5e-07 58.2 152 35.5
Carub.0006s2470 Capsella rubella HOM05D008496 ORTHO05D010729 1.2e-06 57.8 90 40.0
Oeu034222.1 Olea europaea HOM05D001250 ORTHO05D000627 1.2e-06 57.8 110 33.6
C02p24450 Brassica napus HOM05D001250 ORTHO05D000627 1.6e-06 57.4 121 35.5
Nitab4.5_0001616g0060 Nicotiana tabacum HOM05D001250 ORTHO05D000627 1.6e-06 57.4 104 32.7
Aqoxy3G00245 Aquilegia oxysepala HOM05D001250 ORTHO05D000627 2.1e-06 57.0 96 35.4
BcaB05g24373 Brassica carinata HOM05D001250 ORTHO05D000627 2.1e-06 57.0 121 34.7
Dinv31634 Davidia involucrata HOM05D004123 ORTHO05D004768 2.1e-06 57.0 149 39.6
Lj6P755T11 Lonicera japonica HOM05D001250 ORTHO05D000627 2.1e-06 57.0 85 37.6
Peaxi162Scf00753g00021 Petunia axillaris HOM05D001250 ORTHO05D000627 2.1e-06 57.0 122 31.1
A07p34760 Brassica napus HOM05D001250 ORTHO05D000627 2.8e-06 56.6 121 34.7
BolC6t39261H Brassica oleracea HOM05D001250 ORTHO05D000627 2.8e-06 56.6 121 34.7
BraA07t31094Z Brassica rapa HOM05D001250 ORTHO05D000627 2.8e-06 56.6 121 34.7
Nitab4.5_0000791g0080 Nicotiana tabacum HOM05D004123 ORTHO05D004768 2.8e-06 56.6 151 35.1
Cc11_g09880 Coffea canephora HOM05D001250 ORTHO05D000627 3.6e-06 56.2 107 32.7
ECA234G2753 Erigeron canadensis HOM05D001250 ORTHO05D000627 3.6e-06 56.2 105 32.4
unitig_27.g25256 Utricularia gibba HOM05D001250 ORTHO05D000627 3.6e-06 56.2 116 34.5
Aa31LG2G3420 Aethionema arabicum HOM05D001250 ORTHO05D000627 4.7e-06 55.8 122 31.1
ATR1125G014 Amborella trichopoda HOM05D001250 ORTHO05D000627 4.7e-06 55.8 89 38.2
AT5G27880 Arabidopsis thaliana HOM05D008496 ORTHO05D010729 4.7e-06 55.8 111 37.8
arahy.Tifrunner.gnm1.ann1.U1U6XH Arachis hypogaea HOM05D004123 ORTHO05D004768 4.7e-06 55.8 207 35.3
BcaC03g14940 Brassica carinata HOM05D001250 ORTHO05D000627 4.7e-06 55.8 121 34.7
BolC2t08550H Brassica oleracea HOM05D001250 ORTHO05D000627 4.7e-06 55.8 121 34.7
DCAR_007252 Daucus carota HOM05D001250 ORTHO05D000627 4.7e-06 55.8 102 35.3
DCAR_024520 Daucus carota HOM05D001250 ORTHO05D000627 6.1e-06 55.5 90 40.0
Dinv31617 Davidia involucrata HOM05D001250 ORTHO05D000627 6.1e-06 55.5 70 42.9
HanXRQChr17g0567441 Helianthus annuus HOM05D001250 ORTHO05D000627 6.1e-06 55.5 109 29.4
Nitab4.5_0010399g0010 Nicotiana tabacum HOM05D001250 ORTHO05D000627 6.1e-06 55.5 104 31.7
AL6G39050 Arabidopsis lyrata HOM05D008496 ORTHO05D010729 8.0e-06 55.1 111 36.9
HanXRQChr03g0087231 Helianthus annuus HOM05D001250 ORTHO05D000627 8.0e-06 55.1 93 30.1
PSO832G4141 Papaver somniferum HOM05D001250 ORTHO05D000627 8.0e-06 55.1 88 40.9
Psat2g089440 Pisum sativum HOM05D001250 ORTHO05D000627 8.0e-06 55.1 124 30.6


User provided reference genes

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