Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g11680 Schrenkiella parvula HOM05D003551 ORTHO05D004869 0.0e+00 1360.5 811 100.0
Thhalv10006828m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 0.0e+00 1152.9 811 87.1
C08p46730 Brassica napus HOM05D003551 ORTHO05D004869 0.0e+00 1133.2 817 83.1
AL1G24840 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 0.0e+00 1122.5 811 82.2
BolC8t52212H Brassica oleracea HOM05D003551 ORTHO05D004869 0.0e+00 1114.8 818 82.3
A09p63240 Brassica napus HOM05D003551 ORTHO05D004869 0.0e+00 1102.4 818 81.9
BraA09t41676Z Brassica rapa HOM05D003551 ORTHO05D004869 0.0e+00 1098.2 818 81.8
AT1G13160 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 0.0e+00 1094.7 811 83.2
Thhalv10005577m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 1.7e-311 1072.4 812 82.6
Carub.0003s0103 Capsella rubella HOM05D003551 ORTHO05D004869 5.3e-305 1050.8 812 78.6
Carub.0001s1289 Capsella rubella HOM05D003551 ORTHO05D004869 1.2e-304 1049.7 811 81.4
Aa31LG1G1640 Aethionema arabicum HOM05D003551 ORTHO05D004869 1.4e-300 1036.2 811 74.4
AL7G20520 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 1.6e-280 969.5 936 64.0
CARHR068650 Cardamine hirsuta HOM05D003551 ORTHO05D004869 1.9e-270 936.0 823 69.3
AT4G31520 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 2.0e-251 872.8 749 70.2
THA.LOC104809236 Tarenaya hassleriana HOM05D003551 ORTHO05D004869 5.8e-219 765.0 830 62.4
Ciclev10030726m.g Citrus clementina HOM05D003551 ORTHO05D004869 1.1e-214 750.7 816 57.8
COL.COLO4_23531 Corchorus olitorius HOM05D003551 ORTHO05D004869 1.9e-214 750.0 809 54.4
Cpa.g.sc33.80 Carica papaya HOM05D003551 ORTHO05D004869 2.1e-213 746.5 841 52.8
Gohir.A12G268000 Gossypium hirsutum HOM05D003551 ORTHO05D004869 6.4e-210 734.9 825 54.9
Hma1.2p1_0079F.1_g041260 Hydrangea macrophylla HOM05D003551 ORTHO05D004869 2.4e-209 733.0 829 55.9
Gorai.008G288600 Gossypium raimondii HOM05D003551 ORTHO05D004869 4.2e-209 732.3 825 53.8
QL05p021165 Quercus lobata HOM05D003551 ORTHO05D004869 5.5e-209 731.9 821 54.0
Prupe.1G240500 Prunus persica HOM05D003551 ORTHO05D004869 1.8e-207 726.9 825 56.4
MD16G1105900 Malus domestica HOM05D003551 ORTHO05D004869 8.7e-207 724.5 835 54.9
Gohir.D12G268400 Gossypium hirsutum HOM05D003551 ORTHO05D004869 1.9e-206 723.4 825 53.0
Sabra08G0139300 Salix brachista HOM05D003551 ORTHO05D004869 7.4e-206 721.5 836 53.5
CiPaw.06G064600 Carya illinoinensis HOM05D003551 ORTHO05D004869 1.6e-205 720.3 833 52.9
ClCG03G002050 Citrullus lanatus HOM05D003551 ORTHO05D004869 3.1e-204 716.1 834 52.3
Manes.12G019500 Manihot esculenta HOM05D003551 ORTHO05D004869 2.0e-203 713.4 818 54.8
CANSAT01G3182 Cannabis sativa HOM05D003551 ORTHO05D004869 3.4e-203 712.6 837 54.4
DCAR_007035 Daucus carota HOM05D003551 ORTHO05D004869 8.4e-202 708.0 852 54.7
CsaV3_1G012700 Cucumis sativus L. HOM05D003551 ORTHO05D004869 1.2e-200 704.1 838 51.7
Potri.008G182900 Populus trichocarpa HOM05D003551 ORTHO05D004869 1.2e-200 704.1 814 54.7
Duzib268G0822 Durio zibethinus HOM05D003551 ORTHO05D004869 1.6e-200 703.7 814 55.2
Eucgr.H02450 Eucalyptus grandis HOM05D003551 ORTHO05D004869 6.0e-200 701.8 845 53.7
Cfa009260 Carpinus fangiana HOM05D003551 ORTHO05D004869 3.0e-199 699.5 813 57.1
Dinv14754 Davidia involucrata HOM05D003551 ORTHO05D004869 1.1e-198 697.6 877 51.0
ECA240G1955 Erigeron canadensis HOM05D003551 ORTHO05D004869 1.5e-198 697.2 836 54.2
MELO3C022674.2 Cucumis melo HOM05D003551 ORTHO05D004869 4.3e-198 695.7 813 52.0
MELO3C026845.2 Cucumis melo HOM05D003551 ORTHO05D004869 8.2e-197 691.4 841 51.1
MSTRG.7955 Avicennia marina HOM05D003551 ORTHO05D004869 1.4e-196 690.6 816 58.3
Migut.K00634 Erythranthe guttata HOM05D003551 ORTHO05D004869 2.4e-196 689.9 806 53.3
HanXRQChr08g0208471 Helianthus annuus HOM05D003551 ORTHO05D004869 1.2e-195 687.6 824 53.6
Nitab4.5_0001290g0150 Nicotiana tabacum HOM05D003551 ORTHO05D004869 1.2e-195 687.6 822 53.8
Rhsim12G0038300 Rhododendron simsii HOM05D003551 ORTHO05D004869 1.2e-195 687.6 836 53.3
Oeu028968.1 Olea europaea HOM05D003551 ORTHO05D004869 2.6e-195 686.4 818 50.6
Solyc12g099890.2 Solanum lycopersicum HOM05D003551 ORTHO05D004869 7.7e-195 684.9 832 50.4
SalBow2G2049 Salvia bowleyana HOM05D003551 ORTHO05D004869 1.3e-194 684.1 826 51.7
CSS0025446 Camellia sinensis var. sinensis HOM05D003551 ORTHO05D004869 2.5e-193 679.9 850 57.6
FAN12G2593 Fragaria x ananassa HOM05D003551 ORTHO05D004869 4.2e-193 679.1 818 52.6
Sopen12g034510 Solanum pennellii HOM05D003551 ORTHO05D004869 7.2e-193 678.3 817 54.2
PGSC0003DMG400004723 Solanum tuberosum HOM05D003551 ORTHO05D004869 9.4e-193 677.9 820 54.6
TWI36G0896 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 1.6e-192 677.2 819 54.2
Lalb_Chr23g0277731 Lupinus albus HOM05D003551 ORTHO05D004869 6.1e-192 675.2 833 51.4
Nitab4.5_0004725g0020 Nicotiana tabacum HOM05D003551 ORTHO05D004869 7.9e-192 674.9 822 53.3
RcHm_v2.0_Chr4g0432421 Rosa chinensis HOM05D003551 ORTHO05D004869 1.0e-191 674.5 824 51.7
Hund25033 Selenicereus undatus HOM05D003551 ORTHO05D004869 1.4e-191 674.1 824 57.8
Glyma.11G244500 Glycine max HOM05D003551 ORTHO05D004869 2.3e-191 673.3 828 51.3
Cc11_g16150 Coffea canephora HOM05D003551 ORTHO05D004869 5.7e-190 668.7 802 55.2
FAN22G1040 Fragaria x ananassa HOM05D003551 ORTHO05D004869 3.7e-189 666.0 820 52.4
Aqoxy3G01365 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 6.3e-189 665.2 825 52.5
Haze_12293 Corylus avellana HOM05D003551 ORTHO05D004869 6.3e-189 665.2 841 54.0
Phvul.001G256500 Phaseolus vulgaris HOM05D003551 ORTHO05D004869 1.1e-188 664.5 823 52.0
Aqoxy3G00657 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 1.4e-188 664.1 825 52.0
arahy.Tifrunner.gnm1.ann1.A5BQBU Arachis hypogaea HOM05D003551 ORTHO05D004869 6.9e-188 661.8 821 49.6
Lsat_1_v5_gn_8_153700 Lactuca sativa HOM05D003551 ORTHO05D004869 1.2e-187 661.0 826 55.8
Peaxi162Scf00062g00716 Petunia axillaris HOM05D003551 ORTHO05D004869 2.0e-187 660.2 808 49.9
CARHR013530 Cardamine hirsuta HOM05D003551 ORTHO05D004869 1.3e-186 657.5 516 78.3
GSVIVG01000585001 Vitis vinifera HOM05D003551 ORTHO05D004869 2.2e-186 656.8 797 54.2
PSO017G3678 Papaver somniferum HOM05D003551 ORTHO05D004869 2.9e-186 656.4 819 52.3
PGR119G0237 Punica granatum HOM05D003551 ORTHO05D004869 2.9e-186 656.4 834 52.6
Psat2g160640 Pisum sativum HOM05D003551 ORTHO05D004869 3.8e-186 656.0 824 52.1
TWI75G1217 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 1.1e-185 654.4 820 53.7
PSO478G3924 Papaver somniferum HOM05D003551 ORTHO05D004869 3.2e-185 652.9 831 51.6
SGA_v2.0_scaffold92G28200 Striga asiatica HOM05D003551 ORTHO05D004869 3.2e-185 652.9 840 49.2
Oeu014152.4 Olea europaea HOM05D003551 ORTHO05D004869 9.4e-185 651.4 816 49.5
Ca_25128_v3 Cicer arietinum L. HOM05D003551 ORTHO05D004869 1.2e-184 651.0 832 51.2
arahy.Tifrunner.gnm1.ann1.MWLQ6N Arachis hypogaea HOM05D003551 ORTHO05D004869 6.1e-184 648.7 821 49.7
Sed0023493 Sechium edule HOM05D003551 ORTHO05D004869 7.9e-184 648.3 816 50.4
VMungo0540G0742 Vigna mungo HOM05D003551 ORTHO05D004869 1.0e-183 647.9 825 51.9
EL10Ac6g14297 Beta vulgaris HOM05D003551 ORTHO05D004869 3.9e-183 646.0 817 55.0
Medtr3g086350 Medicago truncatula HOM05D003551 ORTHO05D004869 8.8e-183 644.8 831 51.7
Lj1g0001310 Lotus japonicus HOM05D003551 ORTHO05D004869 2.6e-182 643.3 808 50.0
Zm00001eb069620 Zea mays HOM05D003551 ORTHO05D004869 4.4e-182 642.5 848 48.3
CAN.G484.3 Capsicum annuum HOM05D003551 ORTHO05D004869 4.1e-180 636.0 801 53.7
PSO017G4772 Papaver somniferum HOM05D003551 ORTHO05D004869 4.1e-180 636.0 820 50.2
PSO063G2135 Papaver somniferum HOM05D003551 ORTHO05D004869 5.9e-179 632.1 820 50.5
FvH4_4g25230 Fragaria vesca HOM05D003551 ORTHO05D004869 8.5e-178 628.2 769 52.0
Sc04g0005980 Simmondsia chinensis HOM05D003551 ORTHO05D004869 2.5e-177 626.7 837 49.3
TWI34G1512 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 2.5e-177 626.7 805 48.8
TPR.G5678 Trifolium pratense HOM05D003551 ORTHO05D004869 3.6e-176 622.9 823 49.8
Lsat_1_v5_gn_8_153780 Lactuca sativa HOM05D003551 ORTHO05D004869 1.4e-175 620.9 824 50.2
AUR62014112 Chenopodium quinoa HOM05D003551 ORTHO05D004869 1.7e-173 614.0 823 46.9
vmacro01109 Vaccinium macrocarpon HOM05D003551 ORTHO05D004869 2.2e-173 613.6 818 52.4
FAN17G0358 Fragaria x ananassa HOM05D003551 ORTHO05D004869 1.6e-171 607.4 880 47.4
Thecc.02G267000 Theobroma cacao HOM05D003551 ORTHO05D004869 1.3e-170 604.4 702 60.7
HPP92_011125 Vanilla planifolia HOM05D003551 ORTHO05D004869 7.2e-169 598.6 824 47.8
LjContig00312_ERROPOS870357g0004032 Lotus japonicus HOM05D003551 ORTHO05D004869 5.2e-167 592.4 809 49.6
Lj6C816T3 Lonicera japonica HOM05D003551 ORTHO05D004869 4.4e-166 589.3 768 52.3
AUR62002805 Chenopodium quinoa HOM05D003551 ORTHO05D004869 2.8e-152 543.5 800 46.5
SalBow5G3625 Salvia bowleyana HOM05D003551 ORTHO05D004869 2.6e-150 537.0 836 41.9
Pp3c21_560 Physcomitrium patens HOM05D003551 ORTHO05D004869 2.5e-145 520.4 836 43.8
Nn4g22519 Nelumbo nucifera HOM05D003551 ORTHO05D004869 2.2e-141 507.3 651 50.2
Mapoly0084s0017 Marchantia polymorpha HOM05D003551 ORTHO05D004869 1.1e-132 478.4 833 41.1
CDE02G2789 Ceratophyllum demersum HOM05D003551 ORTHO05D004869 4.1e-132 476.5 820 44.5
Aqoxy6G03052 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 1.0e-130 471.9 812 41.5
arahy.Tifrunner.gnm1.ann1.5TZZ24 Arachis hypogaea HOM05D003551 ORTHO05D004869 2.8e-128 463.8 810 39.0
arahy.Tifrunner.gnm1.ann1.006XS9 Arachis hypogaea HOM05D003551 ORTHO05D004869 1.2e-126 458.4 810 38.4
arahy.Tifrunner.gnm1.ann1.X9TT4V Arachis hypogaea HOM05D003551 ORTHO05D004869 1.5e-126 458.0 810 38.6
Os04g0630000 Oryza sativa ssp. japonica HOM05D003551 ORTHO05D004869 2.9e-125 453.8 551 58.1
Pp3c21_561 Physcomitrium patens HOM05D003551 ORTHO05D004869 2.9e-117 427.2 705 44.1
SalBow5G3177 Salvia bowleyana HOM05D003551 ORTHO05D004869 3.2e-116 423.7 848 36.8
unitig_22.g6420 Utricularia gibba HOM05D003551 ORTHO05D004869 2.7e-115 420.6 647 48.1
ATR0824G183 Amborella trichopoda HOM05D003551 ORTHO05D004869 2.3e-114 417.5 445 51.7
SMO197G0095 Selaginella moellendorffii HOM05D003551 ORTHO05D004869 1.3e-106 391.7 746 39.5
SEGI_37161 Sequoiadendron giganteum HOM05D003551 ORTHO05D004869 1.3e-106 391.7 538 50.7
TAR374G0642 Trochodendron aralioides HOM05D003551 ORTHO05D004869 5.1e-106 389.8 475 57.7
AagrBONN_evm.TU.Sc2ySwM_344.4679 Anthoceros agrestis HOM05D003551 ORTHO05D004869 5.6e-105 386.3 736 39.4
CBR_g23824 Chara braunii HOM05D003551 ORTHO05D004869 7.6e-102 375.9 886 37.9
AUR62020542 Chenopodium quinoa HOM05D003551 ORTHO05D004869 7.6e-102 375.9 844 35.9
Atru.chr11.1973 Acer truncatum HOM05D003551 ORTHO05D004869 1.3e-101 375.2 418 58.9
Actinidia01370 Actinidia chinensis HOM05D003551 ORTHO05D004869 1.7e-93 348.2 470 53.4
QL04p087069 Quercus lobata HOM05D003551 ORTHO05D004869 2.2e-85 321.2 560 45.2
Atru.chr11.1974 Acer truncatum HOM05D003551 ORTHO05D004869 1.1e-79 302.4 340 51.8
TAR374G0468 Trochodendron aralioides HOM05D003551 ORTHO05D004869 5.5e-76 290.0 312 50.6
PRCOL_00005223 Prasinoderma coloniale HOM05D003551 ORTHO05D004869 1.2e-75 288.9 819 34.6
Medtr4g006000 Medicago truncatula HOM05D003551 ORTHO05D004869 6.1e-75 286.6 550 37.6
FAN07G2018 Fragaria x ananassa HOM05D003551 ORTHO05D004869 4.1e-71 273.9 250 58.0
MCO05G293 Micromonas commoda HOM05D003551 ORTHO05D004869 2.9e-69 267.7 787 32.7
Cre06.g277050 Chlamydomonas reinhardtii HOM05D003551 ORTHO05D004869 9.4e-68 262.7 904 33.0
SHI17843 Sapria himalayana HOM05D003551 ORTHO05D000023 9.7e-65 252.7 454 36.6
AUR62015661 Chenopodium quinoa HOM05D003551 ORTHO05D004869 5.3e-63 246.9 667 36.0
TPR.G18550 Trifolium pratense HOM05D003551 ORTHO05D004869 7.0e-63 246.5 571 32.7
Medtr4g005970 Medicago truncatula HOM05D003551 ORTHO05D004869 9.7e-57 226.1 451 35.9
BcaB04g19498 Brassica carinata HOM05D003551 ORTHO05D004869 3.1e-55 221.1 134 87.3
ATR0824G018 Amborella trichopoda HOM05D003551 ORTHO05D004869 9.4e-52 209.5 357 52.4
Actinidia08115 Actinidia chinensis HOM05D003551 ORTHO05D004869 1.2e-43 182.6 224 47.8
Cfa023305 Carpinus fangiana HOM05D003551 ORTHO05D004869 8.8e-42 176.4 801 25.7
Actinidia01371 Actinidia chinensis HOM05D002413 ORTHO05D002638 2.2e-40 171.8 167 58.1
Sc04g0005970 Simmondsia chinensis HOM05D003551 ORTHO05D004869 4.1e-39 167.5 408 36.3
unitig_22.g6421 Utricularia gibba HOM05D003551 ORTHO05D004869 1.1e-36 159.5 136 60.3
BcaB06g26385 Brassica carinata HOM05D003551 ORTHO05D016818 4.2e-36 157.5 97 83.5
BcaB07g33803 Brassica carinata HOM05D003551 ORTHO05D032399 4.7e-35 154.1 98 82.7
HPP92_027088 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.7e-35 154.1 395 34.7
Zm00001eb279220 Zea mays HOM05D003551 ORTHO05D004869 2.9e-29 134.8 143 55.2
HPP92_028576 Vanilla planifolia HOM05D003551 ORTHO05D004869 5.0e-29 134.0 314 36.3
HPP92_027649 Vanilla planifolia HOM05D003551 ORTHO05D004869 8.6e-29 133.3 329 35.9
Actinidia08116 Actinidia chinensis HOM05D003551 ORTHO05D004869 3.2e-23 114.8 125 54.4
HPP92_006539 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.5e-22 111.3 127 52.0
HPP92_026938 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.6e-19 101.3 344 33.1
HPP92_006872 Vanilla planifolia HOM05D003551 ORTHO05D016818 5.2e-18 97.4 96 53.1
BcaB07g32274 Brassica carinata HOM05D003551 ORTHO05D004869 6.8e-18 97.1 59 84.7
HPP92_006854 Vanilla planifolia HOM05D003551 ORTHO05D016818 1.5e-17 95.9 80 61.2
arahy.Tifrunner.gnm1.ann1.LJ7GP5 Arachis hypogaea HOM05D003551 ORTHO05D004869 2.6e-17 95.1 102 54.9
HPP92_027653 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.7e-16 91.3 121 45.5
HPP92_027078 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.2e-15 88.2 293 30.7
HPP92_027994 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.7e-14 85.1 125 42.4
BcaB08g34419 Brassica carinata HOM05D003551 ORTHO05D004869 1.7e-13 82.4 53 81.1
A04p22140 Brassica napus HOM05D003551 ORTHO05D103594 6.6e-13 80.5 44 81.8
HPP92_006538 Vanilla planifolia HOM05D003551 ORTHO05D004869 6.6e-13 80.5 80 56.2
HPP92_006576 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.9e-12 79.0 212 36.8
HPP92_027083 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.5e-12 78.6 152 40.8
HPP92_028370 Vanilla planifolia HOM05D003551 ORTHO05D016818 3.6e-11 74.7 72 55.6
HPP92_006855 Vanilla planifolia HOM05D003551 ORTHO05D004869 8.1e-11 73.6 258 31.4
HPP92_026598 Vanilla planifolia HOM05D003551 ORTHO05D004869 8.9e-10 70.1 80 48.8
HPP92_006544 Vanilla planifolia HOM05D003551 ORTHO05D004869 5.8e-09 67.4 159 35.2
HPP92_006540 Vanilla planifolia HOM05D003551 ORTHO05D016818 9.9e-09 66.6 65 55.4
Lj6A816T56 Lonicera japonica HOM05D003551 ORTHO05D004869 1.7e-08 65.9 51 66.7
HPP92_028492 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.9e-08 65.1 129 36.4
HPP92_028550 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.7e-08 64.7 167 37.7
Lalb_Chr05g0228661 Lupinus albus HOM05D003551 ORTHO05D048508 5.4e-07 60.8 121 38.0
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 2.1e-06 58.9 115 39.1
HPP92_027652 Vanilla planifolia HOM05D003551 ORTHO05D016818 2.1e-06 58.9 73 50.7
Migut.C01140 Erythranthe guttata HOM05D003551 ORTHO05D004869 2.7e-06 58.5 74 43.2
HPP92_026933 Vanilla planifolia HOM05D015067 ORTHO05D427257 3.5e-06 58.2 37 73.0
Sed0014055 Sechium edule HOM05D003551 ORTHO05D004869 4.6e-06 57.8 81 45.7


User provided reference genes

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