Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 0.0e+00 1083.2 609 100.0
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 1.1e-257 893.3 617 80.1
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 1.1e-235 820.1 611 79.7
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 1.7e-234 816.2 612 77.5
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 3.9e-228 795.0 609 77.3
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 2.6e-227 792.3 620 74.5
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 1.5e-222 776.5 610 74.3
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 2.6e-219 765.8 607 71.8
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 2.6e-219 765.8 607 71.8
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 1.3e-215 753.4 617 72.4
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 2.9e-215 752.3 614 73.8
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 4.0e-212 741.9 641 70.5
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 4.4e-211 738.4 610 74.8
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 5.7e-211 738.0 608 71.2
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 9.8e-211 737.3 614 74.3
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 1.6e-197 693.3 621 67.8
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 4.1e-169 599.0 633 55.8
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 6.2e-165 585.1 525 72.2
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 1.1e-121 441.4 418 63.2
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 3.2e-105 386.7 644 41.3
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 9.4e-105 385.2 651 41.8
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 6.1e-104 382.5 660 41.4
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 6.7e-103 379.0 665 40.9
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 2.2e-101 374.0 644 39.8
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 3.7e-101 373.2 644 41.5
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 3.7e-101 373.2 644 40.7
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 6.3e-101 372.5 632 40.0
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 7.0e-100 369.0 672 41.7
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 9.1e-100 368.6 647 41.0
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 1.6e-99 367.9 671 39.5
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 1.7e-98 364.4 635 39.7
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 3.2e-97 360.1 646 40.7
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 4.2e-97 359.8 677 38.6
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 4.2e-97 359.8 645 40.2
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 7.2e-97 359.0 654 40.4
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 9.4e-97 358.6 650 41.1
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 1.2e-96 358.2 641 39.6
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 1.6e-96 357.8 665 39.7
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 2.3e-95 354.0 709 38.8
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 5.2e-95 352.8 704 38.5
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 4.8e-93 346.3 671 39.0
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 1.8e-92 344.4 346 64.5
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 4.1e-92 343.2 678 39.1
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 7.0e-92 342.4 688 37.2
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 1.2e-91 341.7 346 64.2
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 2.7e-91 340.5 647 39.4
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 4.5e-91 339.7 680 37.2
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 5.9e-91 339.3 675 36.9
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 7.7e-91 339.0 636 41.5
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.6e-88 331.3 689 38.5
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 1.6e-88 331.3 655 39.7
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 2.8e-88 330.5 702 37.9
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 4.7e-88 329.7 738 36.6
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.0e-87 328.6 696 37.8
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 2.3e-87 327.4 670 37.3
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 1.2e-86 325.1 647 38.5
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 1.5e-86 324.7 623 40.4
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 2.0e-86 324.3 634 38.6
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 7.5e-86 322.4 694 37.3
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 7.5e-86 322.4 669 38.3
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 1.3e-85 321.6 568 41.4
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 4.9e-85 319.7 652 39.0
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 6.3e-85 319.3 707 36.5
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.4e-84 318.2 704 36.5
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 5.4e-84 316.2 704 36.4
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 2.0e-83 314.3 667 36.9
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 2.7e-83 313.9 644 37.7
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 2.3e-82 310.8 711 36.1
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.1e-81 308.5 697 38.0
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 7.3e-81 305.8 354 61.0
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 7.3e-81 305.8 700 36.1
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 2.1e-80 304.3 689 36.0
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 2.1e-80 304.3 699 35.8
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 3.0e-79 300.4 648 38.1
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 6.8e-79 299.3 720 34.6
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 3.4e-78 297.0 643 38.9
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.8e-78 295.4 649 37.1
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 1.0e-74 285.4 334 56.0
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 1.0e-74 285.4 657 36.5
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 1.3e-74 285.0 661 37.4
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 5.0e-74 283.1 691 34.7
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 1.1e-73 282.0 603 35.3
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 7.3e-73 279.3 786 32.3
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 9.5e-73 278.9 638 36.5
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.2e-72 278.5 658 36.0
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 3.6e-72 276.9 676 35.8
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 4.0e-71 273.5 777 31.0
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 2.6e-70 270.8 828 34.1
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 9.8e-70 268.9 836 35.2
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 3.7e-69 266.9 701 36.1
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.9e-68 264.6 668 37.6
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 1.9e-68 264.6 665 36.2
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 2.0e-67 261.2 740 35.4
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 2.7e-67 260.8 789 29.9
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 7.8e-67 259.2 720 34.4
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 7.8e-67 259.2 328 52.4
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 1.0e-66 258.8 384 48.4
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 5.0e-66 256.5 670 33.1
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 1.1e-65 255.4 659 35.5
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 1.5e-65 255.0 628 35.5
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 3.3e-65 253.8 587 36.8
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 5.6e-65 253.1 616 33.9
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 5.6e-65 253.1 748 32.4
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 8.1e-64 249.2 795 35.5
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 1.4e-63 248.4 776 31.4
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.2e-62 245.4 722 35.3
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 2.0e-62 244.6 514 37.9
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 5.8e-62 243.0 852 31.1
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 1.7e-61 241.5 572 34.4
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 3.7e-61 240.4 731 32.0
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 5.4e-60 236.5 702 32.5
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 1.2e-59 235.3 596 36.9
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 2.1e-59 234.6 698 32.2
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 4.6e-59 233.4 600 35.8
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 2.5e-57 227.6 901 28.7
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 1.8e-55 221.5 660 31.5
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 1.3e-53 215.3 673 31.4
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 2.2e-53 214.5 671 31.9
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 8.4e-53 212.6 605 32.2
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 4.3e-49 200.3 622 32.6
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 2.8e-48 197.6 670 31.0
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 6.2e-48 196.4 607 31.6
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 2.0e-46 191.4 604 31.6
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 1.3e-45 188.7 609 31.4
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 6.6e-42 176.4 459 35.3
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 2.1e-40 171.4 600 32.8
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.8e-40 171.0 385 36.1
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 1.6e-35 155.2 216 44.0
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 6.0e-35 153.3 330 38.5
BolC2t12020H Brassica oleracea HOM05D004112 ORTHO05D004739 1.8e-34 151.8 277 42.6
BolC5t30033H Brassica oleracea HOM05D000639 ORTHO05D032511 1.5e-33 148.7 160 59.4
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 9.0e-31 139.4 242 38.0
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 1.2e-30 139.0 619 29.1
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 1.5e-30 138.7 288 39.9
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 2.6e-30 137.9 289 39.8
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 1.7e-29 135.2 299 38.1
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 3.8e-29 134.0 292 37.3
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 1.4e-28 132.1 733 26.2
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 2.4e-28 131.3 174 45.4
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.2e-27 129.0 158 46.2
Ah.03g133390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 2.1e-27 128.3 637 26.8
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 2.7e-27 127.9 177 43.5
BcaC05g25060 Brassica carinata HOM05D021208 ORTHO05D027101 1.8e-26 125.2 87 77.0
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 6.7e-26 123.2 330 34.8
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 1.5e-25 122.1 425 30.4
Sed0006330 Sechium edule HOM05D004112 ORTHO05D004739 4.3e-25 120.6 573 28.3
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 1.3e-24 119.0 787 24.0
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 4.5e-22 110.5 181 44.8
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 4.2e-20 104.0 157 42.7
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 1.6e-19 102.1 149 36.9
Lj2C1008T10 Lonicera japonica HOM05D004112 ORTHO05D004739 7.9e-19 99.8 326 30.4
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 2.6e-14 84.7 84 46.4
CANSAT56G3164 Cannabis sativa HOM05D004112 ORTHO05D004739 1.3e-13 82.4 142 40.8
Peaxi162Scf00067g00115 Petunia axillaris HOM05D004112 ORTHO05D004739 1.7e-13 82.0 79 54.4
Hma1.2p1_0900F.1_g234620 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 2.2e-13 81.6 114 48.2
CsaV3_2G034300 Cucumis sativus L. HOM05D004112 ORTHO05D004739 7.2e-12 76.6 172 36.0
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 7.2e-12 76.6 508 24.2
Lj3P1060T39 Lonicera japonica HOM05D004112 ORTHO05D004739 9.3e-12 76.3 75 49.3
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.0e-10 72.8 125 36.0
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 2.3e-10 71.6 656 24.2
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 3.0e-10 71.2 496 23.8
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 3.0e-10 71.2 125 36.0
Pp3c4_25420 Physcomitrium patens HOM05D004112 ORTHO05D004739 6.7e-10 70.1 89 43.8
PGR042G2157 Punica granatum HOM05D004112 ORTHO05D004739 1.1e-09 69.3 60 55.0
SHI17828 Sapria himalayana HOM05D004112 ORTHO05D004739 1.9e-09 68.6 88 45.5
Lsat_1_v5_gn_3_132580 Lactuca sativa HOM05D000186 ORTHO05D004739 1.3e-08 65.9 238 30.7
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.7e-08 65.5 64 50.0
Pp3c26_4720 Physcomitrium patens HOM05D027689 ORTHO05D018028 1.7e-08 65.5 82 42.7


User provided reference genes

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