Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 7.1e-226 786.9 405 100.0
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 3.7e-190 668.3 405 87.2
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 1.8e-189 666.0 408 86.5
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 3.1e-189 665.2 412 85.2
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 4.1e-189 664.8 408 86.0
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 4.5e-180 634.8 406 82.8
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 1.5e-175 619.8 410 83.4
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 2.6e-175 619.0 410 83.4
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 2.7e-172 609.0 414 82.1
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 2.9e-171 605.5 411 80.0
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 1.1e-170 603.6 411 80.0
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 1.2e-164 583.6 422 77.5
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 1.0e-155 553.9 419 72.6
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 1.3e-155 553.5 428 72.0
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 2.5e-154 549.3 433 69.7
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 3.7e-150 535.4 366 73.5
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 3.7e-150 535.4 410 71.5
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 2.4e-149 532.7 412 73.1
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 5.4e-149 531.6 366 73.2
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 3.5e-148 528.9 409 71.6
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 1.1e-146 523.9 411 71.8
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 3.3e-146 522.3 366 72.7
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 7.3e-146 521.2 366 72.4
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 7.3e-146 521.2 366 72.4
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 1.2e-145 520.4 375 73.3
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 2.8e-145 519.2 370 71.9
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 1.3e-142 510.4 428 66.6
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 1.3e-142 510.4 434 65.0
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 1.7e-142 510.0 429 66.4
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 1.5e-138 496.9 412 69.4
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 1.5e-138 496.9 427 66.3
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 2.8e-137 492.7 393 67.2
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 3.1e-136 489.2 399 64.2
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 4.0e-136 488.8 399 65.7
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 1.5e-135 486.9 438 62.8
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 1.3e-134 483.8 436 63.8
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 3.8e-134 482.3 377 65.8
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 1.4e-133 480.3 430 63.5
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 1.4e-133 480.3 398 64.8
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 1.9e-133 479.9 435 62.8
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 2.4e-133 479.6 392 64.8
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 5.4e-133 478.4 396 63.9
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 5.4e-133 478.4 379 65.2
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 5.4e-133 478.4 377 65.5
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 7.1e-133 478.0 435 63.4
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 7.1e-133 478.0 387 65.1
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 9.3e-133 477.6 424 63.4
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 1.2e-132 477.2 394 64.5
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 1.6e-132 476.9 431 61.0
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 2.7e-132 476.1 396 63.6
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 3.0e-131 472.6 432 61.8
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 3.9e-131 472.2 395 64.3
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 5.1e-131 471.9 424 63.4
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 6.6e-131 471.5 430 62.3
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 6.6e-131 471.5 397 63.5
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 1.1e-130 470.7 389 64.3
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 1.1e-130 470.7 428 60.0
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 1.5e-130 470.3 431 62.4
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 2.5e-130 469.5 427 59.0
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 4.3e-130 468.8 430 61.6
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 4.3e-130 468.8 428 59.1
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 4.3e-130 468.8 397 64.2
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 1.6e-129 466.8 393 63.6
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 2.8e-129 466.1 386 61.1
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 3.6e-129 465.7 385 62.3
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 5.3e-128 461.8 425 61.9
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 5.3e-128 461.8 432 60.4
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 6.9e-128 461.5 433 61.0
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 6.9e-128 461.5 433 61.0
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 1.2e-127 460.7 434 61.5
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 1.5e-127 460.3 391 61.6
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 3.4e-127 459.1 392 63.0
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 3.4e-127 459.1 387 64.1
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 4.5e-127 458.8 432 58.3
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 4.5e-127 458.8 434 61.1
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 4.5e-127 458.8 400 62.2
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 1.3e-126 457.2 429 60.1
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.7e-126 456.8 433 60.7
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.7e-126 456.8 391 62.4
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 2.9e-126 456.1 431 58.9
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 6.4e-126 454.9 389 62.0
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 1.9e-125 453.4 388 61.6
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 2.4e-125 453.0 430 60.5
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 2.4e-125 453.0 431 60.8
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 1.6e-124 450.3 384 60.4
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 1.6e-124 450.3 430 58.4
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 2.1e-124 449.9 387 61.8
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 2.3e-123 446.4 397 60.7
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 6.7e-123 444.9 415 61.2
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 1.1e-122 444.1 429 58.7
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 1.9e-122 443.4 430 61.6
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 2.5e-122 443.0 395 59.7
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 1.3e-121 440.7 439 57.9
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 4.8e-121 438.7 406 60.1
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 8.1e-121 438.0 425 57.9
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 1.4e-120 437.2 404 58.9
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 1.5e-119 433.7 398 59.8
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 4.9e-118 428.7 425 58.8
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 1.1e-117 427.6 407 58.5
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 5.5e-117 425.2 364 61.0
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 6.0e-116 421.8 388 61.1
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 6.0e-116 421.8 372 59.1
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 4.3e-114 415.6 434 57.4
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 5.6e-114 415.2 411 56.7
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 7.4e-114 414.8 412 54.4
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 3.7e-113 412.5 411 53.8
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 3.7e-113 412.5 412 54.4
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 4.8e-113 412.1 382 57.6
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 1.8e-112 410.2 359 59.9
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 1.8e-112 410.2 439 57.6
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 1.7e-110 403.7 407 59.0
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 2.2e-110 403.3 439 57.4
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 1.3e-105 387.5 367 56.9
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 2.4e-104 383.3 365 57.8
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 3.8e-102 375.9 292 65.4
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 1.1e-101 374.4 394 52.8
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 2.7e-100 369.8 456 49.1
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 5.1e-99 365.5 323 62.2
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 5.7e-98 362.1 368 52.2
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 2.1e-92 343.6 394 47.5
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 3.6e-92 342.8 370 48.9
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 2.8e-81 306.6 320 54.4
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 9.1e-72 275.0 428 42.5
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 2.4e-64 250.4 391 38.9
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 5.9e-63 245.7 245 55.5
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 1.0e-62 245.0 294 48.0
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 3.7e-57 226.5 207 55.1
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 1.6e-55 221.1 215 50.7
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 1.5e-53 214.5 153 69.9
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 9.5e-53 211.8 158 70.3
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 1.2e-50 204.9 190 65.8
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 3.4e-50 203.4 154 66.2
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 3.4e-50 203.4 213 54.0
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 3.9e-46 189.9 146 68.5
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 8.9e-43 178.7 290 36.6
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 4.4e-42 176.4 205 52.2
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 5.8e-42 176.0 353 32.3
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 7.1e-24 115.9 65 83.1
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 4.0e-19 100.1 113 53.1
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 1.4e-16 91.7 75 56.0
PRCOL_00002808 Prasinoderma coloniale HOM05D005312 ORTHO05D006459 9.0e-11 72.4 161 32.9
C05p10420 Brassica napus HOM05D005312 ORTHO05D006459 1.2e-07 62.0 36 75.0


User provided reference genes

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