Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g11250 Schrenkiella parvula HOM05D007482 ORTHO05D003038 3.5e-64 248.1 120 100.0
BcaB08g34260 Brassica carinata HOM05D007482 ORTHO05D003038 2.0e-43 179.1 120 70.0
BcaC01g02807 Brassica carinata HOM05D007482 ORTHO05D003038 2.2e-42 175.6 120 68.3
C03p60060 Brassica napus HOM05D007482 ORTHO05D003038 2.2e-42 175.6 120 68.3
A06p32510 Brassica napus HOM05D007482 ORTHO05D003038 1.9e-41 172.6 120 67.5
BcaB08g34259 Brassica carinata HOM05D007482 ORTHO05D003038 5.5e-41 171.0 120 66.7
C08p47220 Brassica napus HOM05D007482 ORTHO05D003038 5.5e-41 171.0 120 66.7
BolC8t52261H Brassica oleracea HOM05D007482 ORTHO05D003038 5.5e-41 171.0 120 66.7
BolC8t52262H Brassica oleracea HOM05D007482 ORTHO05D003038 5.5e-41 171.0 120 66.7
Carub.0001s1235 Capsella rubella HOM05D007482 ORTHO05D003038 6.1e-40 167.5 121 68.6
Thhalv10009569m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 2.3e-39 165.6 100 79.0
A09p63720 Brassica napus HOM05D007482 ORTHO05D003038 3.9e-39 164.9 120 63.3
BraA09t41720Z Brassica rapa HOM05D007482 ORTHO05D003038 3.9e-39 164.9 120 63.3
BcaC05g25121 Brassica carinata HOM05D007482 ORTHO05D003038 2.8e-37 158.7 120 63.3
CARHR012970 Cardamine hirsuta HOM05D007482 ORTHO05D003038 3.1e-36 155.2 120 64.2
AT1G12660 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 4.5e-35 151.4 122 62.3
BolC8t52263H Brassica oleracea HOM05D007482 ORTHO05D003038 5.0e-34 147.9 107 63.6
BcaC05g25122 Brassica carinata HOM05D007482 ORTHO05D003038 2.7e-32 142.1 120 62.5
A06p09020 Brassica napus HOM05D007482 ORTHO05D003038 2.7e-32 142.1 121 60.3
BraA06t24091Z Brassica rapa HOM05D007482 ORTHO05D003038 2.7e-32 142.1 121 60.3
AL1G24120 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 6.1e-32 141.0 117 62.4
Thhalv10009322m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 1.4e-31 139.8 109 64.2
BraA06t26175Z Brassica rapa HOM05D007482 ORTHO05D003038 1.5e-30 136.3 98 64.3
BolC3t18270H Brassica oleracea HOM05D007482 ORTHO05D003038 2.0e-30 136.0 98 64.3
A09p63730 Brassica napus HOM05D007482 ORTHO05D003038 4.4e-30 134.8 98 63.3
C08p47230 Brassica napus HOM05D007482 ORTHO05D003038 4.1e-28 128.3 98 59.2
C05p10620 Brassica napus HOM05D007482 ORTHO05D003038 1.6e-27 126.3 121 57.9
BolC5t29804H Brassica oleracea HOM05D007482 ORTHO05D003038 1.6e-27 126.3 121 57.9
Sp1g11270 Schrenkiella parvula HOM05D007482 ORTHO05D003038 1.8e-20 102.8 132 44.7
CARHR035990 Cardamine hirsuta HOM05D007482 ORTHO05D003038 1.6e-19 99.8 123 44.7
AT1G12663 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 3.5e-19 98.6 117 43.6
Thhalv10017433m.g Eutrema salsugineum HOM05D007482 ORTHO05D016827 2.9e-18 95.5 122 42.6
BcaC05g25168 Brassica carinata HOM05D007482 ORTHO05D003038 3.8e-18 95.1 99 52.5
Thhalv10023017m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 6.5e-18 94.4 117 40.2
CARHR012950 Cardamine hirsuta HOM05D007482 ORTHO05D003038 1.9e-17 92.8 125 44.0
AL1G24130 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 1.2e-16 90.1 115 42.6
AL1G24160 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 2.1e-16 89.4 130 41.5
C08p47200 Brassica napus HOM05D007482 ORTHO05D003038 2.7e-16 89.0 134 35.1
CARHR012960 Cardamine hirsuta HOM05D007482 ORTHO05D003038 6.1e-16 87.8 125 42.4
THA.LOC104823572 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 6.1e-16 87.8 117 38.5
BcaB08g34258 Brassica carinata HOM05D007482 ORTHO05D003038 1.4e-15 86.7 134 35.1
BraA09t41718Z Brassica rapa HOM05D007482 ORTHO05D003038 1.4e-15 86.7 134 34.3
A09p63700 Brassica napus HOM05D007482 ORTHO05D003038 1.8e-15 86.3 134 34.3
Carub.0002s1663 Capsella rubella HOM05D007482 ORTHO05D003038 1.8e-15 86.3 117 39.3
Thhalv10019821m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 1.8e-15 86.3 123 40.7
Manes.04G122400 Manihot esculenta HOM05D005672 ORTHO05D003038 2.3e-15 85.9 116 41.4
C08p47210 Brassica napus HOM05D007482 ORTHO05D003038 4.0e-15 85.1 128 39.1
THA.LOC104823573 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 5.2e-15 84.7 117 35.9
Carub.0001s1236 Capsella rubella HOM05D007482 ORTHO05D003038 1.2e-14 83.6 124 39.5
BolC8t52260H Brassica oleracea HOM05D007482 ORTHO05D003038 2.0e-14 82.8 131 38.2
Sp1g11260 Schrenkiella parvula HOM05D007482 ORTHO05D003038 2.0e-14 82.8 126 39.7
C05p30030 Brassica napus HOM05D007482 ORTHO05D003038 2.6e-14 82.4 132 34.1
BolC5t31740H Brassica oleracea HOM05D007482 ORTHO05D003038 2.6e-14 82.4 132 34.1
BcaB08g34257 Brassica carinata HOM05D007482 ORTHO05D003038 4.4e-14 81.6 116 36.2
C08p47190 Brassica napus HOM05D007482 ORTHO05D003038 4.4e-14 81.6 125 36.8
BraA09t41719Z Brassica rapa HOM05D007482 ORTHO05D003038 9.8e-14 80.5 130 38.5
A09p35330 Brassica napus HOM05D007482 ORTHO05D003038 1.3e-13 80.1 131 33.6
Duzib160G0695 Durio zibethinus HOM05D005672 ORTHO05D003038 1.3e-13 80.1 113 39.8
Carub.0004s0495 Capsella rubella HOM05D007482 ORTHO05D003038 2.2e-13 79.3 140 37.9
A09p63710 Brassica napus HOM05D007482 ORTHO05D003038 2.8e-13 79.0 134 37.3
C05p44560 Brassica napus HOM05D007482 ORTHO05D003038 3.7e-13 78.6 133 35.3
BolC5t33183H Brassica oleracea HOM05D007482 ORTHO05D003038 3.7e-13 78.6 133 34.6
C08p47180 Brassica napus HOM05D007482 ORTHO05D003038 6.3e-13 77.8 120 40.0
BcaB07g32750 Brassica carinata HOM05D007482 ORTHO05D003038 8.3e-13 77.4 118 38.1
Carub.0001s1239 Capsella rubella HOM05D007482 ORTHO05D003038 8.3e-13 77.4 133 39.8
Duzib192G0432 Durio zibethinus HOM05D005672 ORTHO05D003038 1.1e-12 77.0 120 38.3
Duzib192G0711 Durio zibethinus HOM05D005672 ORTHO05D003038 1.1e-12 77.0 120 38.3
BraA05t21798Z Brassica rapa HOM05D007482 ORTHO05D003038 1.4e-12 76.6 133 34.6
BcaC05g28380 Brassica carinata HOM05D007482 ORTHO05D003038 1.8e-12 76.3 119 35.3
A05p29150 Brassica napus HOM05D007482 ORTHO05D003038 1.8e-12 76.3 133 34.6
BraA09t39063Z Brassica rapa HOM05D007482 ORTHO05D003038 1.8e-12 76.3 131 32.8
Duzib192G0507 Durio zibethinus HOM05D005672 ORTHO05D003038 2.4e-12 75.9 120 37.5
Thecc.06G059000 Theobroma cacao HOM05D005672 ORTHO05D003038 4.1e-12 75.1 116 37.1
CARHR182820 Cardamine hirsuta HOM05D007482 ORTHO05D003038 5.4e-12 74.7 90 38.9
Thhalv10019701m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 5.4e-12 74.7 100 39.0
Thecc.06G084400 Theobroma cacao HOM05D005672 ORTHO05D003038 5.4e-12 74.7 120 35.8
Carub.0001s1238 Capsella rubella HOM05D007482 ORTHO05D003038 1.2e-11 73.6 134 38.1
Thhalv10009133m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 1.2e-11 73.6 121 37.2
BolC5t29803H Brassica oleracea HOM05D007482 ORTHO05D003038 1.6e-11 73.2 156 31.4
C05p10610 Brassica napus HOM05D007482 ORTHO05D003038 2.0e-11 72.8 156 31.4
FAN05G0478 Fragaria x ananassa HOM05D005672 ORTHO05D003038 2.7e-11 72.4 118 34.7
CARHR012980 Cardamine hirsuta HOM05D007482 ORTHO05D003038 3.5e-11 72.0 128 36.7
Thecc.06G054500 Theobroma cacao HOM05D005672 ORTHO05D003038 3.5e-11 72.0 113 38.9
Thecc.06G084700 Theobroma cacao HOM05D005672 ORTHO05D003038 3.5e-11 72.0 120 35.8
Prupe.3G072700 Prunus persica HOM05D005672 ORTHO05D003038 4.5e-11 71.6 116 37.1
BolC8t52259H Brassica oleracea HOM05D007482 ORTHO05D003038 5.9e-11 71.2 111 31.5
Cc04_g03540 Coffea canephora HOM05D005672 ORTHO05D003038 5.9e-11 71.2 117 39.3
ClCG09G002230 Citrullus lanatus HOM05D005672 ORTHO05D003038 7.7e-11 70.9 120 37.5
CsaV3_7G033060 Cucumis sativus L. HOM05D005672 ORTHO05D003038 7.7e-11 70.9 122 36.9
Actinidia01798 Actinidia chinensis HOM05D005672 ORTHO05D003038 1.0e-10 70.5 116 34.5
Actinidia02490 Actinidia chinensis HOM05D005672 ORTHO05D003038 1.3e-10 70.1 116 38.8
A05p29160 Brassica napus HOM05D007482 ORTHO05D003038 1.3e-10 70.1 110 34.5
unitig_21.g20351 Utricularia gibba HOM05D005672 ORTHO05D003038 1.3e-10 70.1 109 39.4
C06p24420 Brassica napus HOM05D017967 ORTHO05D003038 1.7e-10 69.7 127 35.4
BolC6t37589H Brassica oleracea HOM05D017967 ORTHO05D003038 1.7e-10 69.7 127 35.4
Prupe.3G073800 Prunus persica HOM05D005672 ORTHO05D003038 1.7e-10 69.7 117 37.6
Prupe.6G180200 Prunus persica HOM05D005672 ORTHO05D003038 1.7e-10 69.7 116 35.3
MD09G1214600 Malus domestica HOM05D005672 ORTHO05D003038 2.3e-10 69.3 118 33.1
Prupe.3G073000 Prunus persica HOM05D005672 ORTHO05D003038 2.3e-10 69.3 118 40.7
Thhalv10009942m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 2.9e-10 68.9 100 37.0
Thecc.06G084800 Theobroma cacao HOM05D005672 ORTHO05D003038 3.8e-10 68.6 121 35.5
TAR624G0127 Trochodendron aralioides HOM05D005672 ORTHO05D003038 3.8e-10 68.6 117 34.2
Actinidia32765 Actinidia chinensis HOM05D005672 ORTHO05D003038 6.6e-10 67.8 107 35.5
Prupe.3G072800 Prunus persica HOM05D005672 ORTHO05D003038 6.6e-10 67.8 117 36.8
MSTRG.22696 Avicennia marina HOM05D005672 ORTHO05D003038 8.6e-10 67.4 115 34.8
C05p30070 Brassica napus HOM05D007482 ORTHO05D003038 8.6e-10 67.4 133 33.1
Eucgr.J03010 Eucalyptus grandis HOM05D005672 ORTHO05D003038 8.6e-10 67.4 112 34.8
SalBow2G2205 Salvia bowleyana HOM05D005672 ORTHO05D003038 8.6e-10 67.4 113 37.2
C06p24320 Brassica napus HOM05D017967 ORTHO05D003038 1.1e-09 67.0 125 35.2
Eucgr.L03103 Eucalyptus grandis HOM05D005672 ORTHO05D003038 1.9e-09 66.2 112 34.8
BraA05t21800Z Brassica rapa HOM05D007482 ORTHO05D003038 5.5e-09 64.7 110 33.6
AT1G12672 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 7.2e-09 64.3 122 37.7
Dinv30519 Davidia involucrata HOM05D005672 ORTHO05D003038 7.2e-09 64.3 94 35.1
Migut.I00857 Erythranthe guttata HOM05D005672 ORTHO05D003038 7.2e-09 64.3 117 35.9
A07p23290 Brassica napus HOM05D017967 ORTHO05D003038 9.5e-09 63.9 128 33.6
Duzib235G0754 Durio zibethinus HOM05D005672 ORTHO05D003038 9.5e-09 63.9 132 32.6
Gohir.A09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 1.2e-08 63.5 126 38.9
Gorai.006G099100 Gossypium raimondii HOM05D005672 ORTHO05D003038 1.2e-08 63.5 126 38.9
QL05p025003 Quercus lobata HOM05D005672 ORTHO05D003038 1.2e-08 63.5 92 39.1
Gohir.D09G083500 Gossypium hirsutum HOM05D005672 ORTHO05D003038 1.6e-08 63.2 126 38.9
BraA09t41717Z Brassica rapa HOM05D007482 ORTHO05D003038 2.1e-08 62.8 50 60.0
A07p23300 Brassica napus HOM05D017967 ORTHO05D003038 2.8e-08 62.4 125 34.4
BraA07t29995Z Brassica rapa HOM05D017967 ORTHO05D003038 2.8e-08 62.4 125 34.4
Duzib192G0281 Durio zibethinus HOM05D005672 ORTHO05D003038 2.8e-08 62.4 120 33.3
Actinidia14259 Actinidia chinensis HOM05D005672 ORTHO05D003038 3.6e-08 62.0 116 35.3
MD17G1196900 Malus domestica HOM05D005672 ORTHO05D003038 4.7e-08 61.6 118 38.1
Eucgr.J03009 Eucalyptus grandis HOM05D005672 ORTHO05D003038 1.4e-07 60.1 113 33.6
Gorai.006G099200 Gossypium raimondii HOM05D005672 ORTHO05D003038 2.3e-07 59.3 122 34.4
Gohir.D09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 4.0e-07 58.5 122 34.4
Gohir.A09G083700 Gossypium hirsutum HOM05D005672 ORTHO05D003038 5.2e-07 58.2 92 39.1
Carub.0002s1662 Capsella rubella HOM05D007482 ORTHO05D016827 1.2e-06 57.0 130 29.2
BolC5t31743H Brassica oleracea HOM05D007482 ORTHO05D003038 1.5e-06 56.6 106 32.1
MELO3C023361.2 Cucumis melo HOM05D005672 ORTHO05D003038 1.5e-06 56.6 100 35.0
COL.COLO4_30353 Corchorus olitorius HOM05D005672 ORTHO05D003038 3.4e-06 55.5 70 41.4
Duzib192G0747 Durio zibethinus HOM05D005672 ORTHO05D003038 4.4e-06 55.1 120 31.7
Sed0004804 Sechium edule HOM05D005672 ORTHO05D003038 4.4e-06 55.1 90 33.3


User provided reference genes

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