Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g10430 Schrenkiella parvula HOM05D004937 ORTHO05D006414 6.1e-247 857.1 442 100.0
Thhalv10006713m.g Eutrema salsugineum HOM05D004937 ORTHO05D000904 2.5e-216 755.4 443 88.3
CARHR012140 Cardamine hirsuta HOM05D004937 ORTHO05D006414 1.4e-203 713.0 447 81.2
BcaB08g37429 Brassica carinata HOM05D004937 ORTHO05D006414 8.7e-201 703.7 447 81.9
AT1G11800 Arabidopsis thaliana HOM05D004937 ORTHO05D006414 1.5e-200 703.0 449 81.5
AL1G22990 Arabidopsis lyrata HOM05D004937 ORTHO05D006414 8.1e-199 697.2 433 82.4
C08p47960 Brassica napus HOM05D004937 ORTHO05D006414 5.3e-198 694.5 449 82.9
BolC8t52333H Brassica oleracea HOM05D004937 ORTHO05D006414 5.3e-198 694.5 449 82.4
Carub.0001s1147 Capsella rubella HOM05D004937 ORTHO05D006414 9.0e-198 693.7 436 81.7
BraA09t41776Z Brassica rapa HOM05D004937 ORTHO05D006414 1.4e-195 686.4 429 83.7
BcaC07g41758 Brassica carinata HOM05D004937 ORTHO05D006414 7.9e-194 680.6 443 82.2
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 1.3e-191 673.3 438 81.7
Aa31LG1G2970 Aethionema arabicum HOM05D004937 ORTHO05D006414 5.1e-185 651.4 429 76.0
THA.LOC104809500 Tarenaya hassleriana HOM05D004937 ORTHO05D006414 1.8e-150 536.6 426 64.6
COL.COLO4_31792 Corchorus olitorius HOM05D004937 ORTHO05D006414 6.1e-138 495.0 416 62.5
Cpa.g.sc152.26 Carica papaya HOM05D004937 ORTHO05D006414 4.0e-137 492.3 427 60.2
Thecc.06G222700 Theobroma cacao HOM05D004937 ORTHO05D006414 7.5e-136 488.0 420 61.7
Haze_06813 Corylus avellana HOM05D004937 ORTHO05D006414 2.8e-135 486.1 425 59.5
Prupe.4G019000 Prunus persica HOM05D004937 ORTHO05D006414 4.8e-135 485.3 445 58.2
TWI63G0901 Tripterygium wilfordii HOM05D004937 ORTHO05D006414 8.3e-135 484.6 441 59.9
Eucgr.D01342 Eucalyptus grandis HOM05D004937 ORTHO05D006414 2.4e-134 483.0 427 58.1
QL05p072835 Quercus lobata HOM05D004937 ORTHO05D006414 2.4e-134 483.0 428 60.0
CiPaw.09G093200 Carya illinoinensis HOM05D004937 ORTHO05D006414 4.1e-134 482.3 424 59.2
GSVIVG01012711001 Vitis vinifera HOM05D004937 ORTHO05D000904 1.7e-132 476.9 419 58.9
arahy.Tifrunner.gnm1.ann1.L1792D Arachis hypogaea HOM05D004937 ORTHO05D006414 2.9e-132 476.1 423 58.6
Lj1A1232T94 Lonicera japonica HOM05D004937 ORTHO05D006414 2.9e-132 476.1 443 57.8
Potri.004G010400 Populus trichocarpa HOM05D004937 ORTHO05D006414 3.8e-132 475.7 477 55.8
Manes.16G005800 Manihot esculenta HOM05D004937 ORTHO05D006414 6.6e-132 474.9 439 56.5
MD10G1323300 Malus domestica HOM05D004937 ORTHO05D006414 8.6e-132 474.6 455 56.5
Ciclev10014440m.g Citrus clementina HOM05D004937 ORTHO05D006414 9.5e-131 471.1 419 59.9
Lj4g0022599 Lotus japonicus HOM05D004937 ORTHO05D006414 3.6e-130 469.2 433 57.3
Sabra04G0005400 Salix brachista HOM05D004937 ORTHO05D006414 2.3e-129 466.5 495 53.1
VMungo1215G2760 Vigna mungo HOM05D004937 ORTHO05D006414 1.2e-128 464.2 412 59.7
CANSAT56G3877 Cannabis sativa HOM05D004937 ORTHO05D006414 2.0e-128 463.4 422 58.3
Glyma.07G261700 Glycine max HOM05D004937 ORTHO05D006414 3.4e-128 462.6 421 58.4
Nn1g07169 Nelumbo nucifera HOM05D004937 ORTHO05D006414 3.4e-128 462.6 416 58.2
Glyma.17G012400 Glycine max HOM05D004937 ORTHO05D006414 1.7e-127 460.3 419 57.8
Rhsim02G0106300 Rhododendron simsii HOM05D004937 ORTHO05D006414 2.8e-127 459.5 428 56.8
MELO3C002448.2 Cucumis melo HOM05D004937 ORTHO05D006414 3.7e-127 459.1 424 56.8
Phvul.003G080000 Phaseolus vulgaris HOM05D004937 ORTHO05D006414 8.3e-127 458.0 422 57.3
arahy.Tifrunner.gnm1.ann1.VWCB5J Arachis hypogaea HOM05D004937 ORTHO05D006414 3.2e-126 456.1 425 57.6
vmacro15793 Vaccinium macrocarpon HOM05D004937 ORTHO05D006414 3.2e-126 456.1 427 58.1
Gohir.D06G214000 Gossypium hirsutum HOM05D004937 ORTHO05D006414 7.8e-125 451.4 422 58.8
Gorai.010G252100 Gossypium raimondii HOM05D004937 ORTHO05D006414 7.8e-125 451.4 422 58.8
PGR042G1615 Punica granatum HOM05D004937 ORTHO05D006414 1.7e-124 450.3 431 57.5
Gohir.A06G207300 Gossypium hirsutum HOM05D004937 ORTHO05D006414 6.6e-124 448.4 422 58.3
Sed0026378 Sechium edule HOM05D004937 ORTHO05D006414 1.1e-123 447.6 416 57.0
Lalb_Chr12g0196051 Lupinus albus HOM05D004937 ORTHO05D006414 1.9e-123 446.8 441 54.9
CsaV3_1G010670 Cucumis sativus L. HOM05D004937 ORTHO05D006414 5.6e-123 445.3 424 55.9
CSS0033735 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.6e-122 443.7 421 57.5
Peaxi162Scf00394g00019 Petunia axillaris HOM05D004937 ORTHO05D006414 8.0e-122 441.4 445 55.5
PGSC0003DMG400019871 Solanum tuberosum HOM05D004937 ORTHO05D006414 2.3e-121 439.9 458 53.3
DCAR_024931 Daucus carota HOM05D004937 ORTHO05D006414 3.1e-121 439.5 431 55.5
Sopen02g011270 Solanum pennellii HOM05D004937 ORTHO05D006414 5.2e-121 438.7 457 53.4
Medtr4g132300 Medicago truncatula HOM05D004937 ORTHO05D006414 8.9e-121 438.0 447 52.3
Peaxi162Scf00307g01425 Petunia axillaris HOM05D004937 ORTHO05D006414 2.6e-120 436.4 445 54.6
Solyc02g032870.4 Solanum lycopersicum HOM05D004937 ORTHO05D006414 4.4e-120 435.6 458 52.6
TAR624G0274 Trochodendron aralioides HOM05D004937 ORTHO05D006414 4.4e-120 435.6 420 57.6
RcHm_v2.0_Chr5g0002731 Rosa chinensis HOM05D004937 ORTHO05D006414 9.8e-120 434.5 479 51.1
PSO541G5924 Papaver somniferum HOM05D004937 ORTHO05D006414 3.7e-119 432.6 439 54.7
FvH4_3g01860 Fragaria vesca HOM05D004937 ORTHO05D006414 8.3e-119 431.4 477 51.8
Cc09_g01540 Coffea canephora HOM05D004937 ORTHO05D000904 1.4e-118 430.6 453 53.0
PSO675G1521 Papaver somniferum HOM05D004937 ORTHO05D006414 2.4e-118 429.9 439 54.7
FAN21G0664 Fragaria x ananassa HOM05D004937 ORTHO05D006414 5.4e-118 428.7 477 51.8
Nitab4.5_0011734g0010 Nicotiana tabacum HOM05D004937 ORTHO05D006414 1.2e-117 427.6 463 54.0
Nitab4.5_0000005g0300 Nicotiana tabacum HOM05D004937 ORTHO05D006414 6.0e-117 425.2 467 52.7
PSO675G7903 Papaver somniferum HOM05D004937 ORTHO05D006414 6.0e-117 425.2 433 55.4
PSO541G2704 Papaver somniferum HOM05D004937 ORTHO05D006414 8.6e-116 421.4 433 55.0
MSTRG.15996 Avicennia marina HOM05D004937 ORTHO05D006414 1.6e-114 417.2 507 47.1
Migut.M01330 Erythranthe guttata HOM05D004937 ORTHO05D000904 2.8e-114 416.4 469 50.3
EL10Ac8g20076 Beta vulgaris HOM05D004937 ORTHO05D006414 6.8e-113 411.8 542 46.1
HPP92_001597 Vanilla planifolia HOM05D004937 ORTHO05D006414 6.8e-113 411.8 424 51.2
Sc24g0000210 Simmondsia chinensis HOM05D004937 ORTHO05D006414 2.0e-112 410.2 474 47.5
HPP92_001591 Vanilla planifolia HOM05D004937 ORTHO05D006414 4.4e-112 409.1 424 50.9
Aqoxy1G02086 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 9.8e-112 407.9 494 46.8
DCAR_028195 Daucus carota HOM05D004937 ORTHO05D006414 1.3e-111 407.5 433 52.0
SalBow8G2768 Salvia bowleyana HOM05D004937 ORTHO05D006414 1.3e-111 407.5 459 48.8
Lsat_1_v5_gn_7_16360 Lactuca sativa HOM05D004937 ORTHO05D006414 1.7e-111 407.1 422 54.5
ECA236G0630 Erigeron canadensis HOM05D004937 ORTHO05D006414 3.2e-110 402.9 444 53.8
HanXRQChr15g0470651 Helianthus annuus HOM05D004937 ORTHO05D006414 2.1e-109 400.2 450 49.8
Psat4g006200 Pisum sativum HOM05D004937 ORTHO05D006414 2.3e-108 396.7 274 66.8
Hund23457 Selenicereus undatus HOM05D004937 ORTHO05D006414 4.3e-107 392.5 534 44.8
unitig_748.g7590 Utricularia gibba HOM05D004937 ORTHO05D006414 1.2e-106 391.0 458 46.1
TPR.G22185 Trifolium pratense HOM05D004937 ORTHO05D006414 1.4e-105 387.5 278 65.5
AUR62021933 Chenopodium quinoa HOM05D004937 ORTHO05D006414 8.9e-105 384.8 534 45.3
Ca_21076_v3 Cicer arietinum L. HOM05D004937 ORTHO05D006414 7.6e-104 381.7 314 59.6
Hma1.2p1_3370F.1_g335650 Hydrangea macrophylla HOM05D004937 ORTHO05D006414 1.9e-102 377.1 425 50.6
Os12g0414900 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 1.9e-99 367.1 361 51.8
SHI02217 Sapria himalayana HOM05D004937 ORTHO05D006414 7.3e-99 365.2 518 43.4
AUR62012723 Chenopodium quinoa HOM05D004937 ORTHO05D006414 8.1e-98 361.7 344 53.8
CDE02G2441 Ceratophyllum demersum HOM05D004937 ORTHO05D006414 7.6e-96 355.1 429 48.0
Haze_06812 Corylus avellana HOM05D004937 ORTHO05D006414 8.4e-95 351.7 282 60.3
HanXRQChr05g0129391 Helianthus annuus HOM05D004937 ORTHO05D006414 1.1e-94 351.3 291 59.8
ATR0794G089 Amborella trichopoda HOM05D004937 ORTHO05D006414 4.2e-94 349.4 267 59.6
SEGI_33731 Sequoiadendron giganteum HOM05D004937 ORTHO05D006414 7.1e-94 348.6 267 59.9
QL05p072858 Quercus lobata HOM05D004937 ORTHO05D006414 2.1e-93 347.1 266 62.8
Zm00001eb043220 Zea mays HOM05D004937 ORTHO05D006414 6.0e-93 345.5 265 62.3
Potri.004G010900 Populus trichocarpa HOM05D004937 ORTHO05D006414 1.0e-92 344.7 311 56.6
PSO017G1772 Papaver somniferum HOM05D004937 ORTHO05D006414 1.7e-92 344.0 294 58.5
Ah.14g087960 Amaranthus hybridus HOM05D004937 ORTHO05D006414 4.0e-89 332.8 525 40.0
Pp3c20_16850 Physcomitrium patens HOM05D004937 ORTHO05D006414 5.3e-89 332.4 330 50.9
Dinv20060 Davidia involucrata HOM05D004937 ORTHO05D006414 3.8e-87 326.2 279 58.4
Dinv13907 Davidia involucrata HOM05D004937 ORTHO05D006414 5.4e-86 322.4 266 56.4
Mapoly0028s0073 Marchantia polymorpha HOM05D004937 ORTHO05D006414 2.1e-85 320.5 304 52.3
BcaB08g37428 Brassica carinata HOM05D004937 ORTHO05D006414 3.9e-84 316.2 226 75.2
QL05p072840 Quercus lobata HOM05D004937 ORTHO05D006414 6.6e-84 315.5 268 57.1
Sed0013617 Sechium edule HOM05D004937 ORTHO05D006414 3.6e-82 309.7 229 62.9
SMO361G0593 Selaginella moellendorffii HOM05D004937 ORTHO05D006414 4.8e-82 309.3 267 55.8
AagrBONN_evm.TU.Sc2ySwM_368.2060 Anthoceros agrestis HOM05D004937 ORTHO05D006414 3.1e-81 306.6 247 57.9
CBR_g38366 Chara braunii HOM05D004937 ORTHO05D006414 3.4e-80 303.1 283 51.6
Migut.M01331 Erythranthe guttata HOM05D004937 ORTHO05D006414 3.0e-76 290.0 292 51.4
BcaB08g37427 Brassica carinata HOM05D004937 ORTHO05D006414 4.8e-74 282.7 178 78.7
ClCG03G004640 Citrullus lanatus HOM05D004937 ORTHO05D006414 6.9e-73 278.9 193 65.3
Aqoxy3G03726 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 4.9e-71 272.7 279 51.3
Aqoxy4G00762 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 6.5e-71 272.3 272 52.6
CSS0005056 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 3.7e-66 256.5 173 65.9
HPP92_014181 Vanilla planifolia HOM05D004937 ORTHO05D006414 1.4e-65 254.6 266 49.6
BcaB08g37425 Brassica carinata HOM05D004937 ORTHO05D006414 1.8e-65 254.2 137 88.3
Zm00001eb048580 Zea mays HOM05D004937 ORTHO05D006414 9.0e-65 251.9 185 62.2
Aqoxy5G03390 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.4e-54 218.0 220 50.9
CSS0029720 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 3.7e-50 203.4 273 42.1
Dinv13906 Davidia involucrata HOM05D004937 ORTHO05D006414 3.7e-50 203.4 266 41.7
Cre06.g305050 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 2.2e-47 194.1 291 38.8
QL05p072848 Quercus lobata HOM05D004937 ORTHO05D006414 1.1e-46 191.8 134 63.4
ClCG03G004650 Citrullus lanatus HOM05D000020 ORTHO05D000904 1.9e-46 191.0 236 52.5
CSS0048087 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 6.1e-45 186.0 273 39.6
Mapoly0074s0008 Marchantia polymorpha HOM05D004937 ORTHO05D006414 1.4e-41 174.9 253 40.7
Psat6g178560 Pisum sativum HOM05D004937 ORTHO05D006414 3.5e-40 170.2 137 59.9
MCO11G820 Micromonas commoda HOM05D004937 ORTHO05D006414 1.0e-39 168.7 297 37.4
Dinv13904 Davidia involucrata HOM05D004937 ORTHO05D006414 6.5e-39 166.0 212 50.5
PRCOL_00004553 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 3.0e-36 157.1 293 36.2
Dinv13905 Davidia involucrata HOM05D004937 ORTHO05D006414 9.1e-33 145.6 102 60.8
Cre06.g305250 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 1.1e-30 138.7 288 34.0
Aqoxy3G02634 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.2e-29 135.2 153 47.7
AagrBONN_evm.TU.Sc2ySwM_368.2061 Anthoceros agrestis HOM05D004937 ORTHO05D006414 1.3e-26 125.2 119 49.6
Lj2C267G4 Lonicera japonica HOM05D004937 ORTHO05D006414 1.3e-23 115.2 98 54.1
PRCOL_00006577 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 1.3e-23 115.2 294 29.9
PGSC0003DMG400026496 Solanum tuberosum HOM05D004937 ORTHO05D006414 1.3e-23 115.2 75 69.3
SGA_v2.0_scaffold4G01909 Striga asiatica HOM05D004937 ORTHO05D006414 2.0e-19 101.3 267 35.6
Atru.chr10.2244 Acer truncatum HOM05D004937 ORTHO05D006414 4.5e-16 90.1 152 46.7
Os10g0401100 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 5.7e-11 73.2 50 64.0
FAN25G1168 Fragaria x ananassa HOM05D004937 ORTHO05D006414 1.7e-10 71.6 114 42.1
BcaC07g41757 Brassica carinata HOM05D004937 ORTHO05D006414 2.2e-10 71.2 58 63.8
Os07g0510300 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 1.8e-09 68.2 102 36.3
Dinv30719 Davidia involucrata HOM05D004937 ORTHO05D006414 5.4e-09 66.6 117 38.5
TPR.G37060 Trifolium pratense HOM05D004937 ORTHO05D006414 9.2e-09 65.9 173 34.7
Os07g0510800 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 1.6e-08 65.1 65 50.8
PSO832G4260 Papaver somniferum HOM05D004937 ORTHO05D002819 1.9e-06 58.2 62 48.4


User provided reference genes

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