Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g10380 Schrenkiella parvula HOM05D005136 ORTHO05D006619 5.6e-75 284.3 152 100.0
CARHR012080 Cardamine hirsuta HOM05D005136 ORTHO05D006619 1.8e-65 252.7 152 89.5
Thhalv10008721m.g Eutrema salsugineum HOM05D005136 ORTHO05D006619 4.1e-65 251.5 156 89.7
AT1G11760 Arabidopsis thaliana HOM05D005136 ORTHO05D006619 3.4e-64 248.4 152 87.5
AL1G22940 Arabidopsis lyrata HOM05D005136 ORTHO05D006619 4.5e-64 248.1 153 88.2
Carub.0001s1142 Capsella rubella HOM05D005136 ORTHO05D006619 1.9e-62 242.7 153 86.3
BcaB03g13232 Brassica carinata HOM05D005136 ORTHO05D006619 1.0e-60 236.9 154 86.4
Aa31LG1G2990 Aethionema arabicum HOM05D005136 ORTHO05D006619 9.7e-59 230.3 153 82.4
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 4.8e-58 228.0 151 84.1
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 8.2e-58 227.3 151 83.4
MD05G1068400 Malus domestica HOM05D005136 ORTHO05D006619 6.1e-53 211.1 153 74.5
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 1.8e-52 209.5 139 84.2
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 1.8e-52 209.5 139 84.2
MD10G1078600 Malus domestica HOM05D005136 ORTHO05D006619 3.9e-52 208.4 153 73.9
THA.LOC104823526 Tarenaya hassleriana HOM05D005136 ORTHO05D006619 5.1e-52 208.0 153 78.4
Prupe.8G100500 Prunus persica HOM05D005136 ORTHO05D006619 1.7e-50 203.0 153 73.2
Hma1.2p1_1375F.1_g278970 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 5.3e-49 198.0 153 70.6
Hma1.2p1_3179F.1_g333696 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 5.3e-49 198.0 153 70.6
RcHm_v2.0_Chr6g0263731 Rosa chinensis HOM05D005136 ORTHO05D006619 5.3e-49 198.0 150 72.0
Rhsim11G0174400 Rhododendron simsii HOM05D005136 ORTHO05D006619 6.9e-49 197.6 153 70.6
Cpa.g.sc31.66 Carica papaya HOM05D005136 ORTHO05D006619 9.1e-49 197.2 153 70.6
FvH4_2g08450 Fragaria vesca HOM05D005136 ORTHO05D006619 1.2e-48 196.8 150 71.3
FAN24G0166 Fragaria x ananassa HOM05D005136 ORTHO05D006619 1.2e-48 196.8 150 71.3
vmacro08119 Vaccinium macrocarpon HOM05D005136 ORTHO05D006619 1.2e-48 196.8 153 71.2
Cfa005022 Carpinus fangiana HOM05D005136 ORTHO05D006619 1.5e-48 196.4 153 69.9
Haze_02365 Corylus avellana HOM05D005136 ORTHO05D006619 1.5e-48 196.4 153 69.9
CsaV3_2G014570 Cucumis sativus L. HOM05D005136 ORTHO05D006619 2.0e-48 196.1 154 70.8
FAN15G2434 Fragaria x ananassa HOM05D005136 ORTHO05D006619 2.6e-48 195.7 150 70.7
Duzib132G0024 Durio zibethinus HOM05D005136 ORTHO05D006619 4.5e-48 194.9 153 69.3
FAN27G1698 Fragaria x ananassa HOM05D005136 ORTHO05D006619 4.5e-48 194.9 150 70.7
Hund22263 Selenicereus undatus HOM05D005136 ORTHO05D006619 4.5e-48 194.9 153 69.9
Aqoxy5G01670 Aquilegia oxysepala HOM05D005136 ORTHO05D006619 5.9e-48 194.5 152 67.8
MELO3C020986.2 Cucumis melo HOM05D005136 ORTHO05D006619 7.7e-48 194.1 154 70.1
QL11p043069 Quercus lobata HOM05D005136 ORTHO05D006619 1.0e-47 193.7 152 71.1
Sed0024996 Sechium edule HOM05D005136 ORTHO05D006619 1.7e-47 193.0 154 70.8
PGR042G3747 Punica granatum HOM05D005136 ORTHO05D006619 2.2e-47 192.6 154 70.8
Cc02_g20820 Coffea canephora HOM05D005136 ORTHO05D006619 2.9e-47 192.2 153 71.2
Potri.004G152700 Populus trichocarpa HOM05D005136 ORTHO05D006619 2.9e-47 192.2 154 69.5
Dinv23543 Davidia involucrata HOM05D005136 ORTHO05D006619 5.0e-47 191.4 153 68.0
BcaB08g37416 Brassica carinata HOM05D005136 ORTHO05D006619 6.5e-47 191.0 153 75.2
Thecc.02G123900 Theobroma cacao HOM05D005136 ORTHO05D006619 6.5e-47 191.0 153 68.0
Atru.chr8.1229 Acer truncatum HOM05D005136 ORTHO05D006619 1.1e-46 190.3 153 69.9
Dinv42084 Davidia involucrata HOM05D005136 ORTHO05D006619 1.4e-46 189.9 153 69.9
COL.COLO4_32439 Corchorus olitorius HOM05D005136 ORTHO05D006619 1.9e-46 189.5 154 68.2
ClCG11G004520 Citrullus lanatus HOM05D005136 ORTHO05D006619 2.5e-46 189.1 154 68.2
Cc02_g17760 Coffea canephora HOM05D005136 ORTHO05D006619 2.5e-46 189.1 152 68.4
PSO700G0271 Papaver somniferum HOM05D005136 ORTHO05D006619 2.5e-46 189.1 153 69.9
Eucgr.G00447 Eucalyptus grandis HOM05D005136 ORTHO05D006619 3.2e-46 188.7 153 67.3
Manes.17G099700 Manihot esculenta HOM05D005136 ORTHO05D006619 5.5e-46 188.0 154 68.8
Phvul.002G127500 Phaseolus vulgaris HOM05D005136 ORTHO05D006619 9.4e-46 187.2 154 68.2
CSS0002049 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.6e-45 186.4 153 68.6
CSS0016345 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.6e-45 186.4 153 68.6
CSS0049550 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.6e-45 186.4 153 68.6
CiPaw.05G062700 Carya illinoinensis HOM05D005136 ORTHO05D006619 1.6e-45 186.4 152 67.1
Migut.B00252 Erythranthe guttata HOM05D005136 ORTHO05D006619 2.1e-45 186.0 153 65.4
SalBow6G6037 Salvia bowleyana HOM05D005136 ORTHO05D006619 2.1e-45 186.0 153 65.4
MSTRG.16796 Avicennia marina HOM05D005136 ORTHO05D006619 2.7e-45 185.7 153 68.0
Nitab4.5_0009564g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 2.7e-45 185.7 153 66.7
MBI16_g37741_MAGBIO Magnolia biondii HOM05D005136 ORTHO05D006619 3.6e-45 185.3 152 67.8
Peaxi162Scf00346g00043 Petunia axillaris HOM05D005136 ORTHO05D006619 3.6e-45 185.3 153 66.7
Sc09g0004050 Simmondsia chinensis HOM05D005136 ORTHO05D006619 3.6e-45 185.3 153 68.0
SGA_v2.0_scaffold106G30693 Striga asiatica HOM05D005136 ORTHO05D006619 4.7e-45 184.9 153 67.3
VMungo1215G0362 Vigna mungo HOM05D005136 ORTHO05D006619 4.7e-45 184.9 154 67.5
CiPaw.06G136800 Carya illinoinensis HOM05D005136 ORTHO05D006619 6.1e-45 184.5 152 67.1
Gohir.D12G018500 Gossypium hirsutum HOM05D005136 ORTHO05D006619 6.1e-45 184.5 154 66.2
Gorai.008G018800 Gossypium raimondii HOM05D005136 ORTHO05D006619 6.1e-45 184.5 154 66.2
TAR628G0554 Trochodendron aralioides HOM05D005136 ORTHO05D006619 7.9e-45 184.1 153 66.7
TAR628G1226 Trochodendron aralioides HOM05D005136 ORTHO05D006619 7.9e-45 184.1 153 66.7
DCAR_026977 Daucus carota HOM05D005136 ORTHO05D006619 1.0e-44 183.7 153 66.7
Glyma.04G123300 Glycine max HOM05D005136 ORTHO05D006619 1.0e-44 183.7 156 68.6
Sopen08g026750 Solanum pennellii HOM05D005136 ORTHO05D006619 1.0e-44 183.7 154 67.5
TAR625G1013 Trochodendron aralioides HOM05D005136 ORTHO05D006619 1.0e-44 183.7 153 66.0
Ah.01g016850 Amaranthus hybridus HOM05D005136 ORTHO05D006619 1.4e-44 183.3 153 66.7
CSS0025161 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.4e-44 183.3 153 68.0
CANSAT11G0677 Cannabis sativa HOM05D005136 ORTHO05D006619 1.4e-44 183.3 156 67.3
Nn1g02125 Nelumbo nucifera HOM05D005136 ORTHO05D006619 1.8e-44 183.0 150 66.7
Gohir.A12G017900 Gossypium hirsutum HOM05D005136 ORTHO05D006619 2.3e-44 182.6 154 65.6
Lj3g0003138 Lotus japonicus HOM05D005136 ORTHO05D006619 2.3e-44 182.6 156 66.7
PGSC0003DMG400026262 Solanum tuberosum HOM05D005136 ORTHO05D006619 2.3e-44 182.6 154 67.5
CAN.G1312.12 Capsicum annuum HOM05D005136 ORTHO05D006619 3.0e-44 182.2 153 66.7
Ciclev10029521m.g Citrus clementina HOM05D005136 ORTHO05D006619 5.2e-44 181.4 153 66.7
TWI79G0765 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 6.7e-44 181.0 157 66.9
Psat5g103000 Pisum sativum HOM05D005136 ORTHO05D006619 1.1e-43 180.3 152 66.4
HPP92_013432 Vanilla planifolia HOM05D005136 ORTHO05D006619 1.1e-43 180.3 157 63.7
HPP92_027116 Vanilla planifolia HOM05D005136 ORTHO05D006619 1.1e-43 180.3 157 63.7
Solyc08g078240.4 Solanum lycopersicum HOM05D005136 ORTHO05D006619 1.5e-43 179.9 151 66.9
Psat5g007800 Pisum sativum HOM05D005136 ORTHO05D006619 2.0e-43 179.5 152 67.8
AUR62023928 Chenopodium quinoa HOM05D005136 ORTHO05D006619 4.4e-43 178.3 153 64.7
Lj5P199T42 Lonicera japonica HOM05D005136 ORTHO05D006619 4.4e-43 178.3 153 64.7
Oeu014338.1 Olea europaea HOM05D005136 ORTHO05D006619 4.4e-43 178.3 153 63.4
AUR62038311 Chenopodium quinoa HOM05D005136 ORTHO05D006619 1.3e-42 176.8 153 63.4
ATR1120G109 Amborella trichopoda HOM05D005136 ORTHO05D006619 1.7e-42 176.4 156 66.7
TWI31G0294 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 2.8e-42 175.6 154 66.9
Gorai.005G228100 Gossypium raimondii HOM05D005136 ORTHO05D006619 3.7e-42 175.3 152 65.8
Glyma.09G214900 Glycine max HOM05D005136 ORTHO05D006619 4.8e-42 174.9 139 70.5
Lalb_Chr23g0265461 Lupinus albus HOM05D005136 ORTHO05D006619 4.8e-42 174.9 154 61.0
Medtr3g116260 Medicago truncatula HOM05D005136 ORTHO05D006619 4.8e-42 174.9 156 64.1
Gohir.D02G202838 Gossypium hirsutum HOM05D005136 ORTHO05D006619 6.3e-42 174.5 152 65.8
Lalb_Chr19g0138591 Lupinus albus HOM05D005136 ORTHO05D006619 6.3e-42 174.5 151 64.9
Lsat_1_v5_gn_7_89621 Lactuca sativa HOM05D005136 ORTHO05D006619 8.2e-42 174.1 154 64.3
EL10Ac9g21088 Beta vulgaris HOM05D005136 ORTHO05D006619 1.1e-41 173.7 138 68.8
Ca_15377_v3 Cicer arietinum L. HOM05D005136 ORTHO05D006619 1.1e-41 173.7 156 64.7
Gohir.A03G179300 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.1e-41 173.7 152 65.1
HanXRQChr05g0152051 Helianthus annuus HOM05D005136 ORTHO05D006619 7.0e-41 171.0 155 64.5
Nn1g05055 Nelumbo nucifera HOM05D005136 ORTHO05D006619 5.9e-40 167.9 154 62.3
unitig_37.g12818 Utricularia gibba HOM05D005136 ORTHO05D006619 2.5e-38 162.5 161 60.2
Actinidia00512 Actinidia chinensis HOM05D005136 ORTHO05D006619 2.7e-37 159.1 122 69.7
Os10g0548400 Oryza sativa ssp. japonica HOM05D005136 ORTHO05D006619 1.3e-34 150.2 171 53.2
PSO170G5319 Papaver somniferum HOM05D005136 ORTHO05D006619 1.3e-34 150.2 117 71.8
ECA236G0931 Erigeron canadensis HOM05D005136 ORTHO05D006619 5.3e-33 144.8 156 55.1
Nitab4.5_0002601g0030 Nicotiana tabacum HOM05D005136 ORTHO05D006619 1.6e-32 143.3 115 67.8
Prupe.5G020100 Prunus persica HOM05D005136 ORTHO05D006619 2.0e-32 142.9 157 55.4
SalBow6G1117 Salvia bowleyana HOM05D005136 ORTHO05D006619 5.9e-32 141.4 112 67.9
RcHm_v2.0_Chr6g0264001 Rosa chinensis HOM05D005136 ORTHO05D006619 6.5e-31 137.9 107 69.2
Zm00001eb284000 Zea mays HOM05D005136 ORTHO05D006619 6.5e-31 137.9 157 51.6
CSS0021040 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.1e-30 137.1 146 57.5
SMO174G0113 Selaginella moellendorffii HOM05D005136 ORTHO05D006619 8.8e-28 127.5 131 52.7
SHI23962 Sapria himalayana HOM05D005136 ORTHO05D006619 2.6e-27 125.9 143 54.5
Atru.chr5.2947 Acer truncatum HOM05D005136 ORTHO05D006619 3.7e-26 122.1 93 69.9
EL10Ac7g17776 Beta vulgaris HOM05D005136 ORTHO05D006619 6.3e-26 121.3 138 52.2
Pp3c10_12480 Physcomitrium patens HOM05D005136 ORTHO05D006619 8.3e-26 120.9 152 46.7
TPR.G21542 Trifolium pratense HOM05D005136 ORTHO05D006619 2.4e-25 119.4 154 49.4
CDE02G3080 Ceratophyllum demersum HOM05D005136 ORTHO05D006619 4.1e-25 118.6 81 70.4
Mapoly0003s0019 Marchantia polymorpha HOM05D005136 ORTHO05D006619 7.0e-25 117.9 130 53.1
EL10Ac9g21097 Beta vulgaris HOM05D006015 ORTHO05D006619 5.0e-23 111.7 96 63.5
Sp2g23220 Schrenkiella parvula HOM05D005136 ORTHO05D006619 1.1e-22 110.5 100 70.0
EL10Ac8g18726 Beta vulgaris HOM05D006015 ORTHO05D007816 1.5e-22 110.2 96 62.5
Oeu014337.1 Olea europaea HOM05D005136 ORTHO05D006619 8.3e-18 94.4 79 53.2
Medtr3g116310 Medicago truncatula HOM05D005136 ORTHO05D006619 1.4e-17 93.6 78 60.3
Psat4g095600 Pisum sativum HOM05D005136 ORTHO05D006619 1.4e-17 93.6 79 58.2
Hma1.2p1_0854F.1_g228935 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 4.5e-16 88.6 71 59.2
Hma1.2p1_2665F.1_g326510 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 4.5e-16 88.6 71 59.2
Thecc.02G123800 Theobroma cacao HOM05D005136 ORTHO05D006619 1.0e-15 87.4 71 59.2
COL.COLO4_32440 Corchorus olitorius HOM05D005136 ORTHO05D006619 1.3e-15 87.0 69 56.5
AagrBONN_evm.TU.Sc2ySwM_369.532 Anthoceros agrestis HOM05D005136 ORTHO05D006619 6.6e-15 84.7 148 37.8
Gohir.A03G179400 Gossypium hirsutum HOM05D005136 ORTHO05D006619 5.6e-14 81.6 69 56.5
Gorai.005G228200 Gossypium raimondii HOM05D005136 ORTHO05D006619 7.3e-14 81.3 69 56.5
Gohir.D02G202857 Gossypium hirsutum HOM05D005136 ORTHO05D006619 9.5e-14 80.9 69 55.1
Lj4g0027023 Lotus japonicus HOM05D005136 ORTHO05D006619 4.7e-13 78.6 62 64.5
EL10Ac1g02225 Beta vulgaris HOM05D005136 ORTHO05D006619 2.3e-12 76.3 175 36.0
Nitab4.5_0012262g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 7.5e-11 71.2 72 47.2
Nitab4.5_0002541g0070 Nicotiana tabacum HOM05D005136 ORTHO05D024799 2.2e-10 69.7 72 47.2
Sc09g0004030 Simmondsia chinensis HOM05D005136 ORTHO05D006619 4.9e-10 68.6 76 56.6
CAN.G1435.13 Capsicum annuum HOM05D005136 ORTHO05D024799 8.3e-10 67.8 70 47.1
C05p09870 Brassica napus HOM05D001191 ORTHO05D000979 1.1e-09 67.4 53 73.6
BolC5t29726H Brassica oleracea HOM05D001191 ORTHO05D000979 1.1e-09 67.4 53 73.6
Os07g0229100 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 3.5e-08 62.4 72 41.7
Solyc09g082750.1 Solanum lycopersicum HOM05D005136 ORTHO05D024799 3.9e-07 58.9 91 35.2
ECA233G0803 Erigeron canadensis HOM05D005136 ORTHO05D006619 8.6e-07 57.8 127 38.6
Peaxi162Scf00316g00313 Petunia axillaris HOM05D005136 ORTHO05D006619 1.9e-06 56.6 51 56.9
Solyc09g082740.1 Solanum lycopersicum HOM05D005136 ORTHO05D024799 4.3e-06 55.5 72 40.3


User provided reference genes

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