Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g10370 Schrenkiella parvula HOM05D004968 ORTHO05D005922 3.2e-139 498.4 255 100.0
Thhalv10008545m.g Eutrema salsugineum HOM05D004968 ORTHO05D005922 4.5e-117 424.9 256 85.2
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 1.7e-116 422.9 254 85.4
BcaB03g13233 Brassica carinata HOM05D004968 ORTHO05D005922 8.5e-116 420.6 255 85.5
AT1G11755 Arabidopsis thaliana HOM05D004968 ORTHO05D005922 1.4e-115 419.9 255 83.1
BcaB03g13234 Brassica carinata HOM05D004968 ORTHO05D005922 2.5e-115 419.1 257 85.2
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 2.5e-115 419.1 255 85.1
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 4.2e-115 418.3 254 84.6
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 4.2e-115 418.3 255 84.7
BcaC05g25044 Brassica carinata HOM05D004968 ORTHO05D005922 9.4e-115 417.2 256 83.6
AL1G22930 Arabidopsis lyrata HOM05D004968 ORTHO05D005922 6.1e-114 414.5 255 82.7
Carub.0001s1141 Capsella rubella HOM05D004968 ORTHO05D005922 3.3e-112 408.7 256 80.1
BraA06t24029Z Brassica rapa HOM05D001191 ORTHO05D000979 1.5e-109 399.8 254 81.9
A06p08310 Brassica napus HOM05D004968 ORTHO05D005922 1.3e-108 396.7 255 81.6
C05p09870 Brassica napus HOM05D001191 ORTHO05D000979 1.1e-107 393.7 254 81.1
BolC5t29726H Brassica oleracea HOM05D001191 ORTHO05D000979 1.1e-107 393.7 254 81.1
CARHR012070 Cardamine hirsuta HOM05D004968 ORTHO05D005922 4.8e-103 378.3 257 75.1
Aa31LG1G3000 Aethionema arabicum HOM05D004968 ORTHO05D005922 2.5e-91 339.3 248 70.6
Aa31LG2G8870 Aethionema arabicum HOM05D004968 ORTHO05D005922 6.3e-87 324.7 256 66.8
THA.LOC104823527 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 1.6e-85 320.1 255 65.5
THA.LOC104818761 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 2.7e-82 309.3 256 64.5
Thecc.02G124000 Theobroma cacao HOM05D004968 ORTHO05D005922 8.6e-68 261.2 254 51.6
Ciclev10028976m.g Citrus clementina HOM05D004968 ORTHO05D005922 1.1e-67 260.8 254 53.1
FvH4_2g08440 Fragaria vesca HOM05D004968 ORTHO05D005922 7.3e-67 258.1 254 51.6
COL.COLO4_32438 Corchorus olitorius HOM05D004968 ORTHO05D005922 2.1e-66 256.5 254 50.0
GSVIVG01031935001 Vitis vinifera HOM05D004968 ORTHO05D005922 4.0e-65 252.3 256 50.4
QL11p042637 Quercus lobata HOM05D004968 ORTHO05D005922 6.8e-65 251.5 254 51.2
QL11p043149 Quercus lobata HOM05D004968 ORTHO05D005922 6.8e-65 251.5 254 51.6
Prupe.8G100600 Prunus persica HOM05D004968 ORTHO05D005922 1.2e-64 250.8 253 51.4
Potri.004G152800 Populus trichocarpa HOM05D004968 ORTHO05D005922 1.5e-64 250.4 256 49.6
Gohir.A12G017700 Gossypium hirsutum HOM05D004968 ORTHO05D005922 2.0e-64 250.0 254 50.0
RcHm_v2.0_Chr6g0263721 Rosa chinensis HOM05D004968 ORTHO05D005922 2.0e-64 250.0 237 51.9
MD10G1078800 Malus domestica HOM05D004968 ORTHO05D005922 2.6e-64 249.6 247 51.0
Actinidia17822 Actinidia chinensis HOM05D004968 ORTHO05D005922 4.4e-64 248.8 254 52.0
Gohir.D12G018300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 7.5e-64 248.1 254 49.6
PGR119G1160 Punica granatum HOM05D004968 ORTHO05D005922 1.3e-63 247.3 237 53.2
Eucgr.F03779 Eucalyptus grandis HOM05D004968 ORTHO05D005922 2.9e-63 246.1 241 50.2
Gorai.008G018600 Gossypium raimondii HOM05D004968 ORTHO05D005922 1.2e-61 240.7 251 49.0
Glyma.01G233700 Glycine max HOM05D004968 ORTHO05D005922 1.6e-61 240.4 242 52.1
Gohir.D13G047300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.6e-61 240.4 244 51.6
TPR.G37890 Trifolium pratense HOM05D004968 ORTHO05D005922 2.0e-61 240.0 242 52.1
Rhsim05G0075100 Rhododendron simsii HOM05D004968 ORTHO05D005922 7.8e-61 238.0 254 50.0
Gorai.013G052900 Gossypium raimondii HOM05D004968 ORTHO05D005922 3.0e-60 236.1 245 51.8
Lj5g0027841 Lotus japonicus HOM05D004968 ORTHO05D005922 5.0e-60 235.3 242 51.7
Dinv23542 Davidia involucrata HOM05D004968 ORTHO05D005922 6.6e-60 235.0 254 49.2
Manes.15G164800 Manihot esculenta HOM05D004968 ORTHO05D005922 6.6e-60 235.0 254 46.1
CANSAT54G1571 Cannabis sativa HOM05D004968 ORTHO05D005922 1.1e-59 234.2 242 48.3
Sed0008504 Sechium edule HOM05D004968 ORTHO05D005922 1.1e-59 234.2 238 49.6
Gohir.A13G048800 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.5e-59 233.8 254 50.4
TWI31G0993 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 4.3e-59 232.3 239 51.0
ClCG09G016910 Citrullus lanatus HOM05D004968 ORTHO05D005922 7.3e-59 231.5 238 49.2
TWI79G0651 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 1.2e-58 230.7 242 49.2
Manes.17G099900 Manihot esculenta HOM05D004968 ORTHO05D005922 1.6e-58 230.3 235 49.8
TPR.G17161 Trifolium pratense HOM05D004968 ORTHO05D005922 1.6e-58 230.3 239 50.6
Phvul.002G041200 Phaseolus vulgaris HOM05D004968 ORTHO05D005922 3.6e-58 229.2 246 50.8
LjContig00222g0024344 Lotus japonicus HOM05D004968 ORTHO05D005922 6.2e-58 228.4 251 51.0
Medtr5g007260 Medicago truncatula HOM05D004968 ORTHO05D005922 6.2e-58 228.4 243 50.6
Rhsim11G0174600 Rhododendron simsii HOM05D004968 ORTHO05D005922 1.1e-57 227.6 255 49.4
TWI75G0648 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 1.4e-57 227.3 253 48.2
Psat2g189320 Pisum sativum HOM05D004968 ORTHO05D005922 2.3e-57 226.5 242 50.8
CsaV3_2G036400 Cucumis sativus L. HOM05D004968 ORTHO05D005922 3.1e-57 226.1 254 47.6
Aqoxy2G00255 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 8.9e-57 224.6 236 50.4
Ca_24432_v3 Cicer arietinum L. HOM05D004968 ORTHO05D005922 1.2e-56 224.2 254 47.2
DCAR_022106 Daucus carota HOM05D004968 ORTHO05D005922 3.4e-56 222.6 242 49.2
Lalb_Chr16g0376541 Lupinus albus HOM05D004968 ORTHO05D005922 3.4e-56 222.6 249 49.4
MELO3C021891.2 Cucumis melo HOM05D004968 ORTHO05D005922 5.8e-56 221.9 238 47.5
Migut.B00251 Erythranthe guttata HOM05D004968 ORTHO05D005922 9.8e-56 221.1 255 42.4
Ah.01g019530 Amaranthus hybridus HOM05D004968 ORTHO05D005922 2.2e-55 219.9 244 45.9
HanXRQChr10g0307261 Helianthus annuus HOM05D004968 ORTHO05D005922 2.2e-55 219.9 244 44.7
Glyma.11G009100 Glycine max HOM05D004968 ORTHO05D005922 2.9e-55 219.5 243 48.6
Nn5g29559 Nelumbo nucifera HOM05D004968 ORTHO05D005922 2.9e-55 219.5 235 47.7
Psat2g154960 Pisum sativum HOM05D004968 ORTHO05D005922 4.9e-55 218.8 242 48.3
Lj5C198G20 Lonicera japonica HOM05D004968 ORTHO05D005922 6.4e-55 218.4 252 44.8
Duzib248G0873 Durio zibethinus HOM05D004968 ORTHO05D005922 8.3e-55 218.0 256 44.9
EL10Ac9g21742 Beta vulgaris HOM05D004968 ORTHO05D005922 1.4e-54 217.2 247 47.0
PSO210G6102 Papaver somniferum HOM05D004968 ORTHO05D005922 1.4e-54 217.2 235 47.7
CSS0007217 Camellia sinensis var. sinensis HOM05D004968 ORTHO05D005922 1.9e-54 216.9 254 46.1
Sopen06g020960 Solanum pennellii HOM05D004968 ORTHO05D005922 1.9e-54 216.9 241 45.2
Cc02_g17750 Coffea canephora HOM05D004968 ORTHO05D005922 2.4e-54 216.5 244 44.7
Aqoxy214s001 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 5.4e-54 215.3 236 48.3
Aqoxy2G00971 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 5.4e-54 215.3 236 48.3
ECA234G4136 Erigeron canadensis HOM05D004968 ORTHO05D005922 9.2e-54 214.5 240 45.0
PGSC0003DMG400024156 Solanum tuberosum HOM05D004968 ORTHO05D005922 1.2e-53 214.2 242 45.0
Nitab4.5_0000618g0170 Nicotiana tabacum HOM05D004968 ORTHO05D005922 2.7e-53 213.0 236 44.9
Hund06225 Selenicereus undatus HOM05D004968 ORTHO05D005922 2.7e-53 213.0 257 43.6
Lsat_1_v5_gn_5_117961 Lactuca sativa HOM05D004968 ORTHO05D005922 4.6e-53 212.2 232 44.4
MSTRG.16797 Avicennia marina HOM05D004968 ORTHO05D005922 6.0e-53 211.8 240 42.9
AUR62032493 Chenopodium quinoa HOM05D004968 ORTHO05D005922 6.0e-53 211.8 234 47.0
PSO210G6272 Papaver somniferum HOM05D004968 ORTHO05D005922 6.0e-53 211.8 243 46.5
CiPaw.05G062800 Carya illinoinensis HOM05D004968 ORTHO05D005922 1.7e-52 210.3 189 57.1
FAN24G2241 Fragaria x ananassa HOM05D004968 ORTHO05D005922 3.0e-52 209.5 226 47.8
Nitab4.5_0000959g0010 Nicotiana tabacum HOM05D004968 ORTHO05D005922 3.0e-52 209.5 251 42.2
AUR62011341 Chenopodium quinoa HOM05D004968 ORTHO05D005922 3.9e-52 209.1 234 47.0
MBI15_g22768_MAGBIO Magnolia biondii HOM05D004968 ORTHO05D005922 5.1e-52 208.8 240 44.6
Sc08g0000410 Simmondsia chinensis HOM05D004968 ORTHO05D005922 6.6e-52 208.4 210 50.5
Haze_02366 Corylus avellana HOM05D004968 ORTHO05D005922 2.5e-51 206.5 213 48.8
DCAR_028995 Daucus carota HOM05D004968 ORTHO05D005922 3.3e-51 206.1 242 43.0
SalBow5G1254 Salvia bowleyana HOM05D004968 ORTHO05D005922 3.3e-51 206.1 239 43.5
MSTRG.17529 Avicennia marina HOM05D004968 ORTHO05D005922 4.3e-51 205.7 238 43.7
Oeu020768.3 Olea europaea HOM05D004968 ORTHO05D005922 1.2e-50 204.1 226 46.5
CAN.G62.20 Capsicum annuum HOM05D004968 ORTHO05D005922 2.1e-50 203.4 254 43.3
SalBow6G2079 Salvia bowleyana HOM05D004968 ORTHO05D005922 2.1e-50 203.4 241 42.7
AUR62016719 Chenopodium quinoa HOM05D004968 ORTHO05D005922 3.6e-50 202.6 234 45.7
unitig_60.g25856 Utricularia gibba HOM05D004968 ORTHO05D005922 8.1e-50 201.4 230 44.8
Medtr5g007330 Medicago truncatula HOM05D004968 ORTHO05D005922 1.1e-49 201.1 239 46.9
Lsat_1_v5_gn_9_109460 Lactuca sativa HOM05D004968 ORTHO05D005922 1.4e-49 200.7 244 41.0
ECA240G2790 Erigeron canadensis HOM05D004968 ORTHO05D005922 2.3e-49 199.9 233 42.9
arahy.Tifrunner.gnm1.ann1.GI2C3C Arachis hypogaea HOM05D004968 ORTHO05D005922 8.9e-49 198.0 229 48.5
Eucgr.L02365 Eucalyptus grandis HOM05D004968 ORTHO05D005922 3.4e-48 196.1 208 46.2
CDE08G1236 Ceratophyllum demersum HOM05D004968 ORTHO05D005922 7.6e-48 194.9 237 42.6
Lalb_Chr05g0211211 Lupinus albus HOM05D004968 ORTHO05D005922 7.6e-48 194.9 258 46.1
HPP92_024488 Vanilla planifolia HOM05D004968 ORTHO05D005922 3.7e-47 192.6 236 44.1
ATR0733G063 Amborella trichopoda HOM05D004968 ORTHO05D005922 2.7e-45 186.4 236 42.8
vmacro17503 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 2.7e-45 186.4 236 45.3
TAR628G0550 Trochodendron aralioides HOM05D004968 ORTHO05D005922 4.6e-45 185.7 211 47.4
TAR628G1407 Trochodendron aralioides HOM05D004968 ORTHO05D005922 4.6e-45 185.7 211 47.4
vmacro17504 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 5.1e-44 182.2 240 44.2
Os03g0197000 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 1.1e-43 181.0 240 40.8
Zm00001eb008090 Zea mays HOM05D004968 ORTHO05D005922 1.9e-43 180.3 235 40.4
TAR376G0049 Trochodendron aralioides HOM05D004968 ORTHO05D005922 5.6e-43 178.7 213 46.0
Cpa.g.sc62.129 Carica papaya HOM05D004968 ORTHO05D005922 7.3e-43 178.3 181 51.4
Atru.chr5.2990 Acer truncatum HOM05D004968 ORTHO05D005922 9.6e-43 177.9 163 55.8
Solyc06g060810.3 Solanum lycopersicum HOM05D004968 ORTHO05D005922 6.2e-42 175.3 242 39.7
Peaxi162Scf00190g01218 Petunia axillaris HOM05D004968 ORTHO05D005922 2.4e-41 173.3 226 40.3
VMungo1309G1500 Vigna mungo HOM05D004968 ORTHO05D005922 5.2e-41 172.2 211 45.5
SHI05416 Sapria himalayana HOM05D004968 ORTHO05D005922 6.8e-41 171.8 217 40.6
Os02g0197700 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 2.0e-40 170.2 237 40.9
HPP92_014277 Vanilla planifolia HOM05D004968 ORTHO05D005922 7.1e-38 161.8 194 45.4
arahy.Tifrunner.gnm1.ann1.UWQD3U Arachis hypogaea HOM05D004968 ORTHO05D005922 2.1e-37 160.2 219 43.8
vmacro02126 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 7.8e-37 158.3 210 42.4
HanXRQChr14g0443031 Helianthus annuus HOM05D004968 ORTHO05D005922 3.9e-36 156.0 238 37.8
Hma1.2p1_1375F.1_g278980 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 4.3e-35 152.5 181 44.8
Hma1.2p1_3179F.1_g333693 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 4.3e-35 152.5 181 44.8
SGA_v2.0_scaffold68G22950 Striga asiatica HOM05D004968 ORTHO05D005922 9.6e-35 151.4 277 35.0
VMungo1309G3063 Vigna mungo HOM05D004968 ORTHO05D005922 9.3e-30 134.8 169 44.4
SEGI_04576 Sequoiadendron giganteum HOM05D004968 ORTHO05D005922 8.7e-28 128.3 242 31.4
SGA_v2.0_scaffold58G20551 Striga asiatica HOM05D004968 ORTHO05D005922 1.7e-23 114.0 166 37.3
Prupe.8G100800 Prunus persica HOM05D004968 ORTHO05D005922 2.2e-23 113.6 134 44.8
DCAR_022108 Daucus carota HOM05D004968 ORTHO05D005922 6.4e-23 112.1 101 55.4
Actinidia26757 Actinidia chinensis HOM05D004968 ORTHO05D005922 9.3e-22 108.2 103 51.5
SMO351G0289 Selaginella moellendorffii HOM05D004968 ORTHO05D005922 3.9e-20 102.8 256 28.9
TPR.G17189 Trifolium pratense HOM05D004968 ORTHO05D005922 6.7e-20 102.1 141 42.6
FAN20G2519 Fragaria x ananassa HOM05D004968 ORTHO05D005922 3.3e-19 99.8 86 53.5
AagrBONN_evm.TU.Sc2ySwM_117.3108 Anthoceros agrestis HOM05D004968 ORTHO05D005922 6.2e-18 95.5 232 28.9
Cc02_g20810 Coffea canephora HOM05D004968 ORTHO05D005922 1.7e-15 87.4 102 45.1
Hma1.2p1_1375F.1_g278990 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 2.9e-15 86.7 90 47.8
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 1.3e-12 77.8 73 46.6
Mapoly0014s0198 Marchantia polymorpha HOM05D004968 ORTHO05D005922 1.8e-12 77.4 148 34.5
Lsat_1_v5_gn_2_61580 Lactuca sativa HOM05D004968 ORTHO05D005922 2.5e-11 73.6 94 37.2
Dinv42083 Davidia involucrata HOM05D004968 ORTHO05D005922 9.6e-11 71.6 137 32.8
Actinidia30740 Actinidia chinensis HOM05D004968 ORTHO05D005922 2.0e-08 63.9 47 68.1
BolC3t13711H Brassica oleracea HOM05D000444 ORTHO05D000489 2.5e-06 57.0 44 63.6


User provided reference genes

Program Settings