Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g09970 Schrenkiella parvula HOM05D005393 ORTHO05D006257 1.3e-238 829.3 422 100.0
Thhalv10007713m.g Eutrema salsugineum HOM05D005393 ORTHO05D006257 5.2e-211 737.6 427 88.5
BcaC05g24995 Brassica carinata HOM05D005393 ORTHO05D006257 2.7e-199 698.7 431 84.9
BolC5t29697H Brassica oleracea HOM05D005393 ORTHO05D006257 3.8e-198 694.9 431 84.7
Carub.0001s1094 Capsella rubella HOM05D005393 ORTHO05D006257 5.6e-197 691.0 423 83.0
CARHR011570 Cardamine hirsuta HOM05D005393 ORTHO05D006257 8.0e-196 687.2 428 82.9
BraA06t23994Z Brassica rapa HOM05D005393 ORTHO05D006257 1.4e-195 686.4 433 83.1
A06p07940 Brassica napus HOM05D005393 ORTHO05D006257 2.0e-194 682.6 428 84.1
AT1G11320 Arabidopsis thaliana HOM05D005393 ORTHO05D006257 7.0e-192 674.1 427 80.6
AL1G22400 Arabidopsis lyrata HOM05D005393 ORTHO05D006257 2.0e-191 672.5 427 81.0
BcaC05g24992 Brassica carinata HOM05D005393 ORTHO05D006257 3.6e-188 661.8 430 82.1
Aa31LG1G3380 Aethionema arabicum HOM05D005393 ORTHO05D006257 7.3e-173 610.9 428 74.5
BcaC05g25006 Brassica carinata HOM05D005393 ORTHO05D006257 1.2e-167 593.6 429 75.5
BraA08t35267Z Brassica rapa HOM05D000013 ORTHO05D000011 4.6e-167 591.7 438 74.0
A08p33510 Brassica napus HOM05D000013 ORTHO05D000011 5.2e-163 578.2 420 75.7
C05p09550 Brassica napus HOM05D005393 ORTHO05D006257 8.7e-158 560.8 361 82.8
THA.LOC104813224 Tarenaya hassleriana HOM05D005393 ORTHO05D006257 1.3e-156 557.0 429 68.3
BolC8t49083H Brassica oleracea HOM05D005393 ORTHO05D006257 1.1e-128 464.2 343 75.5
Cfa006180 Carpinus fangiana HOM05D005393 ORTHO05D006257 6.7e-118 428.3 431 52.4
CSS0039974 Camellia sinensis var. sinensis HOM05D005393 ORTHO05D006257 5.7e-117 425.2 429 52.7
Haze_04666 Corylus avellana HOM05D005393 ORTHO05D006257 1.3e-113 414.1 432 50.9
QL02p012400 Quercus lobata HOM05D005393 ORTHO05D006257 1.7e-113 413.7 430 51.9
Actinidia15447 Actinidia chinensis HOM05D005393 ORTHO05D006257 2.9e-113 412.9 428 52.3
GSVIVG01009966001 Vitis vinifera HOM05D005393 ORTHO05D006257 3.8e-113 412.5 426 51.4
Rhsim06G0018100 Rhododendron simsii HOM05D005393 ORTHO05D006257 2.5e-112 409.8 430 52.1
vmacro07566 Vaccinium macrocarpon HOM05D005393 ORTHO05D006257 1.2e-111 407.5 428 50.7
CiPaw.07G145800 Carya illinoinensis HOM05D005393 ORTHO05D006257 4.7e-111 405.6 429 50.8
Thecc.09G106500 Theobroma cacao HOM05D005393 ORTHO05D006257 3.3e-109 399.4 424 50.9
Potri.005G242900 Populus trichocarpa HOM05D005393 ORTHO05D006257 9.7e-109 397.9 430 49.5
TWI36G1703 Tripterygium wilfordii HOM05D005393 ORTHO05D006257 1.7e-108 397.1 430 50.0
COL.COLO4_34816 Corchorus olitorius HOM05D005393 ORTHO05D006257 2.6e-106 389.8 427 49.4
Manes.18G010800 Manihot esculenta HOM05D005393 ORTHO05D006257 2.2e-105 386.7 429 49.0
ClCG08G014060 Citrullus lanatus HOM05D005393 ORTHO05D006257 8.5e-105 384.8 428 48.4
CsaV3_2G024390 Cucumis sativus L. HOM05D005393 ORTHO05D006257 1.5e-104 384.0 428 46.5
MD08G1009600 Malus domestica HOM05D005393 ORTHO05D006257 2.5e-104 383.3 448 47.1
MBI05_g23374_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 3.2e-104 382.9 424 48.8
Cc10_g01360 Coffea canephora HOM05D005393 ORTHO05D006257 7.2e-104 381.7 429 47.6
Duzib187G0945 Durio zibethinus HOM05D005393 ORTHO05D006257 7.2e-104 381.7 426 50.2
PGR031G3016 Punica granatum HOM05D005393 ORTHO05D006257 7.2e-104 381.7 428 47.4
Eucgr.H00932 Eucalyptus grandis HOM05D005393 ORTHO05D006257 1.6e-103 380.6 430 47.0
TAR625G0839 Trochodendron aralioides HOM05D005393 ORTHO05D006257 2.7e-103 379.8 429 48.3
Oeu051167.1 Olea europaea HOM05D005393 ORTHO05D006257 1.8e-102 377.1 427 47.8
Migut.C00880 Erythranthe guttata HOM05D005393 ORTHO05D006257 3.3e-101 372.9 427 47.1
Sed0019030 Sechium edule HOM05D005393 ORTHO05D006257 1.7e-100 370.5 422 46.7
Lalb_Chr08g0246221 Lupinus albus HOM05D005393 ORTHO05D006257 2.8e-100 369.8 426 46.5
MELO3C011344.2 Cucumis melo HOM05D005393 ORTHO05D006257 1.1e-99 367.9 425 45.9
C08p14400 Brassica napus HOM05D005393 ORTHO05D006257 3.1e-99 366.3 344 62.5
AUR62018264 Chenopodium quinoa HOM05D005393 ORTHO05D006257 3.1e-99 366.3 429 45.7
SalBow7G1577 Salvia bowleyana HOM05D005393 ORTHO05D006257 4.1e-99 365.9 423 46.8
MSTRG.1171 Avicennia marina HOM05D005393 ORTHO05D006257 5.3e-99 365.5 428 47.0
Dinv39544 Davidia involucrata HOM05D005393 ORTHO05D006257 7.0e-99 365.2 378 51.3
EL10Ac1g02146 Beta vulgaris HOM05D005393 ORTHO05D006257 3.5e-98 362.8 428 44.6
AUR62013927 Chenopodium quinoa HOM05D005393 ORTHO05D006257 5.9e-98 362.1 427 45.2
Lj4A800T35 Lonicera japonica HOM05D005393 ORTHO05D006257 1.0e-97 361.3 394 48.5
Gohir.D05G026300 Gossypium hirsutum HOM05D005393 ORTHO05D006257 1.3e-97 360.9 425 48.0
Gorai.009G026400 Gossypium raimondii HOM05D005393 ORTHO05D006257 1.3e-97 360.9 425 48.0
Ciclev10001305m.g Citrus clementina HOM05D005393 ORTHO05D006257 1.7e-97 360.5 424 46.7
Atru.chr13.247 Acer truncatum HOM05D005393 ORTHO05D006257 1.1e-96 357.8 382 49.7
Gorai.010G073400 Gossypium raimondii HOM05D005393 ORTHO05D006257 3.2e-96 356.3 424 46.9
Nitab4.5_0000147g0020 Nicotiana tabacum HOM05D005393 ORTHO05D006257 2.7e-95 353.2 427 47.5
DCAR_013885 Daucus carota HOM05D005393 ORTHO05D006257 1.4e-94 350.9 427 45.4
Lj1g0025002 Lotus japonicus HOM05D005393 ORTHO05D006257 1.4e-94 350.9 423 44.9
FAN11G2844 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.3e-94 350.1 422 45.0
BcaB03g13262 Brassica carinata HOM05D005393 ORTHO05D006257 4.0e-94 349.4 425 52.0
Ca_15477_v3 Cicer arietinum L. HOM05D005393 ORTHO05D006257 5.2e-94 349.0 399 48.1
Gohir.A05G024800 Gossypium hirsutum HOM05D005393 ORTHO05D006257 5.2e-94 349.0 425 46.4
FvH4_3g40530 Fragaria vesca HOM05D005393 ORTHO05D006257 1.2e-93 347.8 422 44.8
Nitab4.5_0001663g0130 Nicotiana tabacum HOM05D005393 ORTHO05D006257 1.2e-93 347.8 427 46.1
Psat0s1401g0120 Pisum sativum HOM05D005393 ORTHO05D006257 1.3e-92 344.4 417 46.5
FAN16G1012 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.2e-92 343.6 422 44.5
Aqoxy3G02145 Aquilegia oxysepala HOM05D005393 ORTHO05D006257 2.8e-92 343.2 440 45.5
FAN21G0637 Fragaria x ananassa HOM05D005393 ORTHO05D006257 3.7e-92 342.8 423 44.7
Gohir.A06G064400 Gossypium hirsutum HOM05D005393 ORTHO05D006257 2.4e-91 340.1 423 46.1
Glyma.04G022700 Glycine max HOM05D005393 ORTHO05D006257 5.4e-91 339.0 418 45.9
arahy.Tifrunner.gnm1.ann1.XU63JK Arachis hypogaea HOM05D005393 ORTHO05D006257 2.7e-90 336.7 422 44.3
Solyc04g015400.3 Solanum lycopersicum HOM05D005393 ORTHO05D006257 2.7e-90 336.7 419 46.1
Solyc04g015430.4 Solanum lycopersicum HOM05D005393 ORTHO05D006257 4.5e-90 335.9 421 46.3
arahy.Tifrunner.gnm1.ann1.ZND7EK Arachis hypogaea HOM05D005393 ORTHO05D006257 1.3e-89 334.3 422 44.1
Sopen04g007480 Solanum pennellii HOM05D005393 ORTHO05D006257 1.3e-89 334.3 421 46.3
Sopen04g007470 Solanum pennellii HOM05D005393 ORTHO05D006257 1.7e-89 334.0 419 46.1
Medtr3g114130 Medicago truncatula HOM05D005393 ORTHO05D006257 2.9e-89 333.2 415 45.1
Solyc04g015380.1 Solanum lycopersicum HOM05D005393 ORTHO05D006257 6.6e-89 332.0 422 45.0
Sopen04g007450 Solanum pennellii HOM05D005393 ORTHO05D006257 1.9e-88 330.5 422 45.3
Sc15g0004770 Simmondsia chinensis HOM05D005393 ORTHO05D006257 7.2e-88 328.6 395 44.3
RcHm_v2.0_Chr6g0303441 Rosa chinensis HOM05D005393 ORTHO05D006257 1.6e-87 327.4 440 45.7
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 1.6e-87 327.4 424 45.0
FvH4_2g38110 Fragaria vesca HOM05D005393 ORTHO05D006257 2.8e-87 326.6 441 45.6
TPR.G17177 Trifolium pratense HOM05D005393 ORTHO05D006257 2.8e-87 326.6 417 43.9
RcHm_v2.0_Chr5g0073211 Rosa chinensis HOM05D005393 ORTHO05D006257 2.3e-86 323.6 430 43.3
Peaxi162Scf01286g00014 Petunia axillaris HOM05D005393 ORTHO05D006257 3.4e-85 319.7 375 46.9
VMungo1309G1297 Vigna mungo HOM05D005393 ORTHO05D006257 4.4e-85 319.3 418 44.0
Sopen04g007460 Solanum pennellii HOM05D005393 ORTHO05D006257 1.3e-84 317.8 419 44.4
Solyc04g015390.2 Solanum lycopersicum HOM05D005393 ORTHO05D006257 2.2e-84 317.0 419 43.9
FAN15G1059 Fragaria x ananassa HOM05D005393 ORTHO05D006257 6.3e-84 315.5 401 47.6
Dinv31876 Davidia involucrata HOM05D005393 ORTHO05D006257 1.8e-83 313.9 366 45.6
PSO170G5793 Papaver somniferum HOM05D005393 ORTHO05D006257 1.3e-81 307.8 464 41.4
PSO700G0289 Papaver somniferum HOM05D005393 ORTHO05D006257 1.1e-80 304.7 467 41.8
Hund05166 Selenicereus undatus HOM05D005393 ORTHO05D006257 3.6e-79 299.7 467 37.0
arahy.Tifrunner.gnm1.ann1.00YXRD Arachis hypogaea HOM05D005393 ORTHO05D006257 1.8e-78 297.4 422 41.0
TPR.G38234 Trifolium pratense HOM05D005393 ORTHO05D006257 1.8e-78 297.4 415 41.0
FAN27G3400 Fragaria x ananassa HOM05D005393 ORTHO05D006257 5.2e-78 295.8 418 44.5
FAN25G1265 Fragaria x ananassa HOM05D005393 ORTHO05D006257 8.9e-78 295.0 420 41.0
unitig_46.g18035 Utricularia gibba HOM05D005393 ORTHO05D006257 1.7e-76 290.8 401 41.6
Phvul.009G018400 Phaseolus vulgaris HOM05D005393 ORTHO05D006257 2.9e-76 290.0 418 40.9
Ah.00g000790 Amaranthus hybridus HOM05D005393 ORTHO05D006257 1.9e-75 287.3 387 39.8
HanXRQChr13g0386891 Helianthus annuus HOM05D005393 ORTHO05D006257 1.1e-72 278.1 421 41.1
Prupe.1G361500 Prunus persica HOM05D005393 ORTHO05D006257 3.1e-70 270.0 332 44.9
Lsat_1_v5_gn_8_29721 Lactuca sativa HOM05D005393 ORTHO05D006257 4.4e-69 266.2 434 38.7
HPP92_022193 Vanilla planifolia HOM05D005393 ORTHO05D006257 1.9e-67 260.8 437 36.8
HPP92_022185 Vanilla planifolia HOM05D005393 ORTHO05D006257 7.0e-67 258.8 437 36.8
ATR0752G131 Amborella trichopoda HOM05D005393 ORTHO05D006257 1.3e-65 254.6 419 37.5
ECA233G5167 Erigeron canadensis HOM05D005393 ORTHO05D006257 3.0e-65 253.4 375 40.5
CDE05G3077 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 1.7e-60 237.7 376 37.0
CDE05G0353 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 4.3e-56 223.0 361 36.8
MBI05_g40808_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 7.3e-56 222.2 213 57.3
Os06g0724200 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 5.8e-53 212.6 392 33.2
Zm00001eb222750 Zea mays HOM05D005393 ORTHO05D006257 1.2e-45 188.3 439 30.3
Zm00001eb272190 Zea mays HOM05D005393 ORTHO05D006257 4.2e-43 179.9 392 32.7
Cpa.g.sc26.290 Carica papaya HOM05D005393 ORTHO05D006257 3.0e-41 173.7 189 47.1
Lsat_1_v5_gn_4_160601 Lactuca sativa HOM05D005393 ORTHO05D006257 1.9e-40 171.0 263 42.2
Nn6g31970 Nelumbo nucifera HOM05D005393 ORTHO05D006257 5.6e-40 169.5 160 56.9
SEGI_40641 Sequoiadendron giganteum HOM05D005393 ORTHO05D006257 4.8e-39 166.4 430 29.3
AagrBONN_evm.TU.Sc2ySwM_362.761 Anthoceros agrestis HOM05D005393 ORTHO05D006257 7.6e-37 159.1 444 30.2
Nn6g31969 Nelumbo nucifera HOM05D005393 ORTHO05D006257 1.3e-36 158.3 207 43.0
Mapoly0004s0136 Marchantia polymorpha HOM05D005393 ORTHO05D006257 6.0e-34 149.4 437 27.5
Pp3c4_19410 Physcomitrium patens HOM05D005393 ORTHO05D006257 6.7e-33 146.0 485 27.6
SMO141G0148 Selaginella moellendorffii HOM05D046829 ORTHO05D006257 6.7e-33 146.0 431 30.2
Os10g0438300 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 2.1e-31 141.0 404 28.0
AagrBONN_evm.TU.Sc2ySwM_362.762 Anthoceros agrestis HOM05D005393 ORTHO05D006257 4.6e-26 123.2 440 28.4
CBR_g46669 Chara braunii HOM05D000019 ORTHO05D000002 4.6e-26 123.2 460 27.0
PGSC0003DMG400027267 Solanum tuberosum HOM05D005393 ORTHO05D006257 1.6e-23 114.8 141 40.4
BcaB08g37392 Brassica carinata HOM05D000013 ORTHO05D000011 3.7e-23 113.6 210 39.5
Pp3c3_18780 Physcomitrium patens HOM05D005393 ORTHO05D006257 6.9e-22 109.4 200 37.0
Pp3c26_6520 Physcomitrium patens HOM05D005393 ORTHO05D006257 6.7e-17 92.8 198 31.3
C08p48240 Brassica napus HOM05D005393 ORTHO05D006257 8.5e-12 75.9 60 73.3
TPR.G684 Trifolium pratense HOM05D005393 ORTHO05D006257 1.9e-11 74.7 76 44.7
MD15G1008500 Malus domestica HOM05D005393 ORTHO05D006257 4.2e-11 73.6 74 44.6
TPR.G21884 Trifolium pratense HOM05D005393 ORTHO05D006257 5.5e-11 73.2 78 44.9
BolC8t49084H Brassica oleracea HOM05D000013 ORTHO05D000011 3.6e-10 70.5 41 82.9
FAN16G0769 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.1e-08 65.5 59 57.6
TPR.G890 Trifolium pratense HOM05D005393 ORTHO05D006257 6.3e-07 59.7 61 45.9
FAN11G0106 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.8e-06 58.2 101 38.6
FAN16G3589 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.8e-06 58.2 101 38.6


User provided reference genes

Program Settings