Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g08530 Schrenkiella parvula HOM05D006739 ORTHO05D008402 8.5e-82 308.9 236 100.0
CARHR009960 Cardamine hirsuta HOM05D006739 ORTHO05D008402 3.7e-69 266.9 236 90.3
AL1G20500 Arabidopsis lyrata HOM05D006739 ORTHO05D008402 5.3e-68 263.1 236 89.8
AT1G09900 Arabidopsis thaliana HOM05D006739 ORTHO05D008402 3.5e-67 260.4 236 89.8
Carub.0001s0928 Capsella rubella HOM05D006739 ORTHO05D008402 1.1e-65 255.4 238 88.7
A06p06610 Brassica napus HOM05D006739 ORTHO05D008402 4.5e-59 233.4 236 86.0
BcaC05g24834 Brassica carinata HOM05D006739 ORTHO05D008402 7.7e-59 232.6 239 85.8
BraA06t23875Z Brassica rapa HOM05D006739 ORTHO05D008402 7.7e-59 232.6 236 85.6
C05p08020 Brassica napus HOM05D006739 ORTHO05D008402 4.2e-57 226.9 236 86.0
BolC5t29554H Brassica oleracea HOM05D006739 ORTHO05D008402 8.0e-56 222.6 236 84.7
THA.LOC104816789 Tarenaya hassleriana HOM05D006739 ORTHO05D008402 4.7e-48 196.8 237 78.9
Aa31LG1G4990 Aethionema arabicum HOM05D006739 ORTHO05D008402 4.0e-47 193.7 237 78.1
Atru.chr13.953 Acer truncatum HOM05D006739 ORTHO05D008402 5.4e-28 130.2 162 51.2
Ciclev10000605m.g Citrus clementina HOM05D006739 ORTHO05D008402 2.3e-26 124.8 260 56.2
Manes.05G187600 Manihot esculenta HOM05D006739 ORTHO05D008402 2.3e-26 124.8 152 50.7
Thecc.08G075400 Theobroma cacao HOM05D006739 ORTHO05D008402 1.6e-24 118.6 248 62.9
Gorai.010G032500 Gossypium raimondii HOM05D006739 ORTHO05D008402 2.1e-24 118.2 239 62.3
Gohir.A06G030375 Gossypium hirsutum HOM05D006739 ORTHO05D008402 4.7e-24 117.1 239 61.9
Cfa013823 Carpinus fangiana HOM05D006739 ORTHO05D008402 8.1e-24 116.3 172 44.2
Dinv44882 Davidia involucrata HOM05D006739 ORTHO05D008402 1.4e-23 115.5 260 60.4
CiPaw.08G057600 Carya illinoinensis HOM05D006739 ORTHO05D008402 2.3e-23 114.8 178 44.4
Haze_22495 Corylus avellana HOM05D006739 ORTHO05D008402 3.1e-23 114.4 172 43.6
Duzib093G0111 Durio zibethinus HOM05D006739 ORTHO05D008402 1.5e-22 112.1 248 59.7
Sabra02G0086200 Salix brachista HOM05D006739 ORTHO05D008402 2.6e-22 111.3 149 47.0
Eucgr.F02164 Eucalyptus grandis HOM05D006739 ORTHO05D008402 4.4e-22 110.5 173 42.8
TWI56G0071 Tripterygium wilfordii HOM05D006739 ORTHO05D008402 7.5e-22 109.8 173 39.9
COL.COLO4_35303 Corchorus olitorius HOM05D006739 ORTHO05D008402 1.3e-21 109.0 155 43.9
RcHm_v2.0_Chr7g0233521 Rosa chinensis HOM05D006739 ORTHO05D008402 1.7e-21 108.6 252 58.3
Potri.002G109500 Populus trichocarpa HOM05D006739 ORTHO05D008402 1.1e-20 105.9 149 47.0
MD08G1206600 Malus domestica HOM05D006739 ORTHO05D008402 2.4e-20 104.8 174 41.4
QL12p039876 Quercus lobata HOM05D006739 ORTHO05D008402 4.1e-20 104.0 253 54.9
MD15G1390100 Malus domestica HOM05D006739 ORTHO05D008402 5.4e-20 103.6 262 54.2
TAR628G0153 Trochodendron aralioides HOM05D006739 ORTHO05D008402 2.7e-19 101.3 108 57.4
Gohir.D06G029600 Gossypium hirsutum HOM05D006739 ORTHO05D008402 4.6e-19 100.5 191 70.2
CSS0033703 Camellia sinensis var. sinensis HOM05D006739 ORTHO05D008402 1.7e-18 98.6 171 39.2
CSS0036090 Camellia sinensis var. sinensis HOM05D006739 ORTHO05D008402 1.7e-18 98.6 171 39.2
Nitab4.5_0002667g0050 Nicotiana tabacum HOM05D006739 ORTHO05D008402 2.3e-18 98.2 239 60.7
Nitab4.5_0002667g0060 Nicotiana tabacum HOM05D006739 ORTHO05D008402 2.3e-18 98.2 239 57.7
Prupe.1G539000 Prunus persica HOM05D006739 ORTHO05D008402 2.3e-18 98.2 260 56.2
Migut.N00013 Erythranthe guttata HOM05D006739 ORTHO05D008402 3.0e-18 97.8 157 41.4
FvH4_5g34030 Fragaria vesca HOM05D006739 ORTHO05D008402 3.0e-18 97.8 252 59.1
FAN18G3137 Fragaria x ananassa HOM05D006739 ORTHO05D008402 3.0e-18 97.8 252 59.1
FAN08G0673 Fragaria x ananassa HOM05D006739 ORTHO05D008402 3.9e-18 97.4 252 59.1
Sed0004950 Sechium edule HOM05D006739 ORTHO05D008402 5.1e-18 97.1 146 44.5
Hma1.2p1_0010F.1_g006410 Hydrangea macrophylla HOM05D006739 ORTHO05D008402 1.5e-17 95.5 205 59.5
TAR152G0001 Trochodendron aralioides HOM05D006739 ORTHO05D008402 1.5e-17 95.5 196 61.7
ECA247G1663 Erigeron canadensis HOM05D006739 ORTHO05D008402 1.9e-17 95.1 154 41.6
Duzib116G0618 Durio zibethinus HOM05D006739 ORTHO05D008402 2.5e-17 94.7 152 44.1
MBI16_g36544_MAGBIO Magnolia biondii HOM05D006739 ORTHO05D008402 2.5e-17 94.7 190 67.9
Phvul.009G145100 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 2.5e-17 94.7 158 41.8
Lsat_1_v5_gn_1_781 Lactuca sativa HOM05D006739 ORTHO05D008402 5.6e-17 93.6 153 37.9
Sc15g0003370 Simmondsia chinensis HOM05D006739 ORTHO05D008402 5.6e-17 93.6 99 54.5
MSTRG.24837 Avicennia marina HOM05D006739 ORTHO05D008402 7.3e-17 93.2 190 70.5
VMungo1309G0048 Vigna mungo HOM05D006739 ORTHO05D008402 7.3e-17 93.2 154 40.9
EL10Ac1g00466 Beta vulgaris HOM05D006739 ORTHO05D008402 1.6e-16 92.0 259 52.9
Glyma.06G092600 Glycine max HOM05D006739 ORTHO05D008402 2.8e-16 91.3 159 42.1
Aqoxy5G01872 Aquilegia oxysepala HOM05D006739 ORTHO05D008402 3.6e-16 90.9 174 72.4
DCAR_019326 Daucus carota HOM05D006739 ORTHO05D008402 4.7e-16 90.5 177 37.3
MELO3C011106.2 Cucumis melo HOM05D006739 ORTHO05D008402 1.4e-15 89.0 247 55.9
CsaV3_2G030450 Cucumis sativus L. HOM05D006739 ORTHO05D008402 1.4e-15 89.0 245 56.3
HanXRQChr11g0324241 Helianthus annuus HOM05D006739 ORTHO05D008402 1.4e-15 89.0 148 41.2
PSO700G0042 Papaver somniferum HOM05D006739 ORTHO05D008402 1.4e-15 89.0 170 72.4
AUR62019126 Chenopodium quinoa HOM05D006739 ORTHO05D008402 1.8e-15 88.6 159 75.5
PSO761G0270 Papaver somniferum HOM05D006739 ORTHO05D008402 2.4e-15 88.2 201 66.2
Glyma.04G090900 Glycine max HOM05D006739 ORTHO05D008402 4.0e-15 87.4 103 51.5
Hund26833 Selenicereus undatus HOM05D006739 ORTHO05D008402 4.0e-15 87.4 105 48.6
Lj1g0027306 Lotus japonicus HOM05D006739 ORTHO05D008402 8.9e-15 86.3 173 37.6
Oeu020282.1 Olea europaea HOM05D006739 ORTHO05D008402 1.2e-14 85.9 161 72.7
ClCG08G011830 Citrullus lanatus HOM05D006739 ORTHO05D008402 1.5e-14 85.5 237 57.8
Peaxi162Scf01212g00003 Petunia axillaris HOM05D006739 ORTHO05D008402 1.5e-14 85.5 148 39.9
Sopen06g003030 Solanum pennellii HOM05D006739 ORTHO05D008402 5.8e-14 83.6 178 35.4
PGSC0003DMG400014713 Solanum tuberosum HOM05D006739 ORTHO05D008402 1.3e-13 82.4 182 35.2
PGSC0003DMG400027357 Solanum tuberosum HOM05D006739 ORTHO05D008402 1.3e-13 82.4 182 35.2
Hund26854 Selenicereus undatus HOM05D006739 ORTHO05D008402 2.2e-13 81.6 90 53.3
Ah.05g171720 Amaranthus hybridus HOM05D006739 ORTHO05D008402 2.9e-13 81.3 265 50.2
Rhsim07G0214200 Rhododendron simsii HOM05D006739 ORTHO05D008402 2.9e-13 81.3 165 36.4
Actinidia10267 Actinidia chinensis HOM05D006739 ORTHO05D008402 6.4e-13 80.1 176 50.0
Hund26855 Selenicereus undatus HOM05D006739 ORTHO05D008402 8.4e-13 79.7 167 40.1
TAR381G0861 Trochodendron aralioides HOM05D006739 ORTHO05D008402 8.4e-13 79.7 179 34.1
Hund26853 Selenicereus undatus HOM05D006739 ORTHO05D008402 1.1e-12 79.3 142 38.7
SalBow5G4649 Salvia bowleyana HOM05D006739 ORTHO05D008402 1.9e-12 78.6 62 62.9
Hund26842 Selenicereus undatus HOM05D006739 ORTHO05D008402 4.1e-12 77.4 87 51.7
Phvul.008G184000 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 9.2e-12 76.3 107 48.6
VMungo0647G0534 Vigna mungo HOM05D006739 ORTHO05D008402 1.2e-11 75.9 121 44.6
CAN.G941.26 Capsicum annuum HOM05D006739 ORTHO05D008402 2.1e-11 75.1 131 85.5
AUR62014385 Chenopodium quinoa HOM05D006739 ORTHO05D008402 2.7e-11 74.7 99 44.4
vmacro04630 Vaccinium macrocarpon HOM05D006739 ORTHO05D008402 2.7e-11 74.7 162 35.2
PGR042G0142 Punica granatum HOM05D006739 ORTHO05D008402 6.0e-11 73.6 155 66.5
Ca_15539_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 1.3e-10 72.4 94 43.6
VMungo0647G1229 Vigna mungo HOM05D006739 ORTHO05D008402 2.3e-10 71.6 121 41.3
DCAR_012846 Daucus carota HOM05D006739 ORTHO05D008402 3.0e-10 71.2 172 38.4
Glyma.02G216900 Glycine max HOM05D006739 ORTHO05D008402 3.9e-10 70.9 121 40.5
Glyma.14G184200 Glycine max HOM05D006739 ORTHO05D008402 6.6e-10 70.1 174 52.3
CDE07G2071 Ceratophyllum demersum HOM05D006739 ORTHO05D008402 3.3e-09 67.8 176 65.9
ATR0800G015 Amborella trichopoda HOM05D006739 ORTHO05D008402 4.3e-09 67.4 89 43.8
Psat5g018720 Pisum sativum HOM05D006739 ORTHO05D008402 4.3e-09 67.4 89 43.8
arahy.Tifrunner.gnm1.ann1.CH37P4 Arachis hypogaea HOM05D006739 ORTHO05D008402 5.6e-09 67.0 93 46.2
SGA_v2.0_scaffold123G33426 Striga asiatica HOM05D006739 ORTHO05D008402 9.6e-09 66.2 144 31.9
Phvul.008G183900 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 1.2e-08 65.9 90 47.8
arahy.Tifrunner.gnm1.ann1.M3C1JT Arachis hypogaea HOM05D006739 ORTHO05D008402 6.2e-08 63.5 102 44.1
CDE04G0064 Ceratophyllum demersum HOM05D006739 ORTHO05D008402 6.2e-08 63.5 176 51.7
CDE06G1140 Ceratophyllum demersum HOM05D002753 ORTHO05D003097 1.4e-07 62.4 159 55.3
Ca_05489_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 4.0e-07 60.8 55 50.9
Ca_29619_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 4.0e-07 60.8 55 50.9
Actinidia19611 Actinidia chinensis HOM05D006739 ORTHO05D008402 6.9e-07 60.1 96 39.6
TPR.G12357 Trifolium pratense HOM05D006739 ORTHO05D008402 1.5e-06 58.9 56 50.0
CANSAT25G1844 Cannabis sativa HOM05D006739 ORTHO05D008402 2.0e-06 58.5 163 31.9
TPR.G15758 Trifolium pratense HOM05D000069 ORTHO05D001849 7.6e-06 56.6 70 42.9


User provided reference genes

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