Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g07420 Schrenkiella parvula HOM05D001069 ORTHO05D007586 3.9e-64 248.1 131 100.0
Thhalv10009095m.g Eutrema salsugineum HOM05D001069 ORTHO05D007586 1.4e-58 229.6 131 91.6
BcaB07g34137 Brassica carinata HOM05D001069 ORTHO05D007586 1.9e-58 229.2 131 92.4
A06p05680 Brassica napus HOM05D001069 ORTHO05D007586 9.2e-58 226.9 131 90.8
C05p06850 Brassica napus HOM05D001069 ORTHO05D007586 3.5e-57 224.9 131 90.8
A08p34980 Brassica napus HOM05D001069 ORTHO05D007586 1.3e-56 223.0 129 89.9
CARHR008700 Cardamine hirsuta HOM05D001069 ORTHO05D007586 1.7e-56 222.6 131 87.8
BcaNung06267 Brassica carinata HOM05D001069 ORTHO05D007586 8.6e-56 220.3 131 86.3
BraA08t35409Z Brassica rapa HOM05D001069 ORTHO05D007586 2.5e-55 218.8 129 89.1
AL1G19210 Arabidopsis lyrata HOM05D001069 ORTHO05D007586 7.3e-55 217.2 131 87.0
BcaC07g38446 Brassica carinata HOM05D001069 ORTHO05D007586 1.6e-54 216.1 132 86.4
C08p12160 Brassica napus HOM05D001069 ORTHO05D007586 1.6e-54 216.1 132 86.4
AT1G08780 Arabidopsis thaliana HOM05D001069 ORTHO05D007586 3.6e-54 214.9 131 87.0
BolC5t29444H Brassica oleracea HOM05D001069 ORTHO05D007586 3.6e-54 214.9 119 92.4
BraA06t23778Z Brassica rapa HOM05D001069 ORTHO05D007586 8.1e-54 213.8 119 91.6
Aa31sc20G40 Aethionema arabicum HOM05D001069 ORTHO05D007586 8.9e-53 210.3 131 85.5
THA.LOC104823751 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 1.7e-51 206.1 131 84.0
Carub.0001s0812 Capsella rubella HOM05D001069 ORTHO05D007586 2.2e-51 205.7 119 89.1
THA.LOC104805822 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 1.1e-50 203.4 131 84.0
BolC8t48854H Brassica oleracea HOM05D001069 ORTHO05D007586 1.6e-49 199.5 154 72.7
Thecc.05G281200 Theobroma cacao HOM05D001069 ORTHO05D007586 2.3e-48 195.7 129 81.4
Nitab4.5_0001592g0010 Nicotiana tabacum HOM05D001069 ORTHO05D007586 3.9e-48 194.9 131 78.6
Nitab4.5_0008996g0040 Nicotiana tabacum HOM05D001069 ORTHO05D007586 3.9e-48 194.9 131 78.6
Peaxi162Scf00282g00417 Petunia axillaris HOM05D001069 ORTHO05D007586 3.9e-48 194.9 131 77.9
RcHm_v2.0_Chr3g0450701 Rosa chinensis HOM05D001069 ORTHO05D007586 5.1e-48 194.5 131 80.2
CANSAT54G2612 Cannabis sativa HOM05D001069 ORTHO05D007586 6.6e-48 194.1 130 77.7
MD12G1242900 Malus domestica HOM05D001069 ORTHO05D007586 6.6e-48 194.1 131 80.2
MSTRG.20449 Avicennia marina HOM05D001069 ORTHO05D007586 8.6e-48 193.7 131 79.4
Gorai.013G120600 Gossypium raimondii HOM05D001069 ORTHO05D007586 8.6e-48 193.7 126 79.4
Duzib128G0644 Durio zibethinus HOM05D001069 ORTHO05D007586 1.1e-47 193.4 129 79.8
Gohir.D13G107700 Gossypium hirsutum HOM05D001069 ORTHO05D007586 1.1e-47 193.4 129 79.8
PGR004G2600 Punica granatum HOM05D001069 ORTHO05D007586 1.1e-47 193.4 131 79.4
Gohir.A13G104300 Gossypium hirsutum HOM05D001069 ORTHO05D007586 1.5e-47 193.0 129 79.8
MD04G1225700 Malus domestica HOM05D001069 ORTHO05D007586 1.5e-47 193.0 131 79.4
Prupe.6G344500 Prunus persica HOM05D001069 ORTHO05D007586 1.5e-47 193.0 131 78.6
EL10Ac4g09163 Beta vulgaris HOM05D001069 ORTHO05D007586 4.3e-47 191.4 129 77.5
COL.COLO4_15368 Corchorus olitorius HOM05D001069 ORTHO05D007586 5.6e-47 191.0 124 79.8
Hund22103 Selenicereus undatus HOM05D001069 ORTHO05D007586 5.6e-47 191.0 123 77.2
Duzib177G1121 Durio zibethinus HOM05D001069 ORTHO05D007586 9.6e-47 190.3 129 79.8
FvH4_6g02700 Fragaria vesca HOM05D001069 ORTHO05D007586 9.6e-47 190.3 131 78.6
FAN14G5212 Fragaria x ananassa HOM05D001069 ORTHO05D007586 9.6e-47 190.3 131 78.6
GSVIVG01036275001 Vitis vinifera HOM05D001069 ORTHO05D007586 9.6e-47 190.3 131 77.9
CSS0013670 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 1.6e-46 189.5 131 77.9
CSS0018717 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 1.6e-46 189.5 131 77.9
Eucgr.H04324 Eucalyptus grandis HOM05D001069 ORTHO05D007586 1.6e-46 189.5 131 76.3
FAN14G1639 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.6e-46 189.5 131 78.6
FAN14G4385 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.6e-46 189.5 131 78.6
VMungo0720G0790 Vigna mungo HOM05D001069 ORTHO05D007586 1.6e-46 189.5 131 77.9
FAN05G3732 Fragaria x ananassa HOM05D001069 ORTHO05D007586 2.1e-46 189.1 131 77.9
FAN09G0270 Fragaria x ananassa HOM05D001069 ORTHO05D007586 2.1e-46 189.1 131 77.9
AUR62000994 Chenopodium quinoa HOM05D001069 ORTHO05D007586 2.8e-46 188.7 129 76.0
AUR62004967 Chenopodium quinoa HOM05D001069 ORTHO05D007586 2.8e-46 188.7 129 76.0
Manes.09G151800 Manihot esculenta HOM05D001069 ORTHO05D007586 2.8e-46 188.7 131 77.9
Ciclev10029576m.g Citrus clementina HOM05D001069 ORTHO05D007586 3.6e-46 188.3 128 77.3
Sc09g0003960 Simmondsia chinensis HOM05D001069 ORTHO05D007586 3.6e-46 188.3 129 76.0
TAR636G2667 Trochodendron aralioides HOM05D001069 ORTHO05D001549 3.6e-46 188.3 126 77.0
Cc02_g30720 Coffea canephora HOM05D001069 ORTHO05D007586 4.7e-46 188.0 131 77.1
FAN02G3324 Fragaria x ananassa HOM05D001069 ORTHO05D007586 4.7e-46 188.0 131 77.1
Glyma.20G225500 Glycine max HOM05D001069 ORTHO05D007586 8.1e-46 187.2 131 76.3
Lalb_Chr21g0311011 Lupinus albus HOM05D001069 ORTHO05D007586 8.1e-46 187.2 131 76.3
TWI12G0612 Tripterygium wilfordii HOM05D001069 ORTHO05D007586 8.1e-46 187.2 131 77.1
CiPaw.08G122900 Carya illinoinensis HOM05D001069 ORTHO05D007586 1.1e-45 186.8 131 75.6
Lalb_Chr06g0168091 Lupinus albus HOM05D001069 ORTHO05D007586 1.1e-45 186.8 131 76.3
Nn1g02583 Nelumbo nucifera HOM05D001069 ORTHO05D007586 1.1e-45 186.8 131 75.6
Oeu002656.1 Olea europaea HOM05D001069 ORTHO05D007586 1.1e-45 186.8 131 77.1
CAN.G134.94 Capsicum annuum HOM05D001069 ORTHO05D007586 1.4e-45 186.4 124 76.6
Cfa006409 Carpinus fangiana HOM05D001069 ORTHO05D001549 1.8e-45 186.0 122 77.9
Haze_04370 Corylus avellana HOM05D001069 ORTHO05D007586 1.8e-45 186.0 122 77.9
Phvul.007G187900 Phaseolus vulgaris HOM05D001069 ORTHO05D007586 1.8e-45 186.0 131 76.3
Aqoxy2G00949 Aquilegia oxysepala HOM05D001069 ORTHO05D007586 2.4e-45 185.7 131 74.0
Glyma.10G162900 Glycine max HOM05D001069 ORTHO05D007586 3.1e-45 185.3 131 75.6
Manes.08G135700 Manihot esculenta HOM05D001069 ORTHO05D007586 3.1e-45 185.3 131 76.3
SGA_v2.0_scaffold5G02970 Striga asiatica HOM05D001069 ORTHO05D007586 4.0e-45 184.9 131 74.0
Actinidia32808 Actinidia chinensis HOM05D001069 ORTHO05D007586 5.2e-45 184.5 131 74.8
Potri.013G042100 Populus trichocarpa HOM05D001069 ORTHO05D007586 6.8e-45 184.1 131 74.8
Migut.B01094 Erythranthe guttata HOM05D001069 ORTHO05D007586 1.2e-44 183.3 131 74.8
Psat6g145040 Pisum sativum HOM05D001069 ORTHO05D007586 1.5e-44 183.0 131 74.0
ClCG02G016730 Citrullus lanatus HOM05D001069 ORTHO05D007586 2.0e-44 182.6 122 75.4
arahy.Tifrunner.gnm1.ann1.SY74BB Arachis hypogaea HOM05D001069 ORTHO05D007586 2.6e-44 182.2 131 74.0
CiPaw.07G068400 Carya illinoinensis HOM05D001069 ORTHO05D007586 2.6e-44 182.2 131 74.8
Os03g0628900 Oryza sativa ssp. japonica HOM05D001069 ORTHO05D007586 2.6e-44 182.2 129 73.6
PSO210G4375 Papaver somniferum HOM05D001069 ORTHO05D007586 2.6e-44 182.2 131 74.0
arahy.Tifrunner.gnm1.ann1.AYUH3A Arachis hypogaea HOM05D001069 ORTHO05D007586 5.8e-44 181.0 131 72.5
ECA233G1896 Erigeron canadensis HOM05D000316 ORTHO05D000374 5.8e-44 181.0 131 74.0
Lj5g0026442 Lotus japonicus HOM05D001069 ORTHO05D007586 5.8e-44 181.0 131 74.0
Potri.005G054500 Populus trichocarpa HOM05D001069 ORTHO05D007586 7.6e-44 180.6 131 74.8
PSO832G3124 Papaver somniferum HOM05D001069 ORTHO05D007586 9.9e-44 180.3 131 73.3
Rhsim07G0074100 Rhododendron simsii HOM05D001069 ORTHO05D007586 9.9e-44 180.3 131 74.8
Sabra05G0047400 Salix brachista HOM05D001069 ORTHO05D001549 9.9e-44 180.3 131 75.6
Ca_10042_v3 Cicer arietinum L. HOM05D001069 ORTHO05D007586 1.7e-43 179.5 122 75.4
QL03p027238 Quercus lobata HOM05D001069 ORTHO05D007586 2.2e-43 179.1 130 73.8
Sed0025346 Sechium edule HOM05D001069 ORTHO05D007586 2.2e-43 179.1 131 73.3
Dinv20292 Davidia involucrata HOM05D001069 ORTHO05D007586 2.9e-43 178.7 129 73.6
MELO3C004390.2 Cucumis melo HOM05D001069 ORTHO05D007586 3.8e-43 178.3 131 71.0
unitig_52.g17389 Utricularia gibba HOM05D001069 ORTHO05D007586 8.4e-43 177.2 124 75.8
Medtr1g080770 Medicago truncatula HOM05D001069 ORTHO05D007586 1.1e-42 176.8 131 71.8
CDE06G2591 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 1.9e-42 176.0 131 71.0
DCAR_006651 Daucus carota HOM05D001069 ORTHO05D007586 2.4e-42 175.6 131 72.5
Atru.chr2.835 Acer truncatum HOM05D001069 ORTHO05D007586 3.2e-42 175.3 131 71.0
TPR.G12907 Trifolium pratense HOM05D001069 ORTHO05D007586 3.2e-42 175.3 131 71.0
Nn3g19512 Nelumbo nucifera HOM05D001069 ORTHO05D007586 7.1e-42 174.1 131 70.2
HanXRQChr16g0514711 Helianthus annuus HOM05D001069 ORTHO05D007586 6.0e-41 171.0 131 71.0
Sed0020567 Sechium edule HOM05D001069 ORTHO05D007586 1.0e-40 170.2 131 68.7
PGSC0003DMG401019457 Solanum tuberosum HOM05D001069 ORTHO05D007586 5.1e-40 167.9 131 69.5
Solyc01g097300.4 Solanum lycopersicum HOM05D001069 ORTHO05D007586 1.1e-39 166.8 131 69.5
Sopen01g040970 Solanum pennellii HOM05D001069 ORTHO05D007586 1.1e-39 166.8 131 69.5
CsaV3_2G004010 Cucumis sativus L. HOM05D001069 ORTHO05D007586 7.3e-39 164.1 131 66.4
ATR0665G433 Amborella trichopoda HOM05D001069 ORTHO05D007586 1.3e-38 163.3 131 67.2
CDE07G0518 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 4.0e-37 158.3 131 66.4
MBI04_g44868_MAGBIO Magnolia biondii HOM05D001069 ORTHO05D007586 6.9e-37 157.5 131 66.4
Zm00001eb051110 Zea mays HOM05D001069 ORTHO05D007586 3.4e-36 155.2 129 65.1
HanXRQChr17g0559331 Helianthus annuus HOM05D001069 ORTHO05D007586 1.3e-35 153.3 131 65.6
HPP92_026288 Vanilla planifolia HOM05D001069 ORTHO05D007586 1.3e-35 153.3 129 65.9
Zm00001eb218870 Zea mays HOM05D001069 ORTHO05D007586 6.4e-35 151.0 129 64.3
CBR_g8595 Chara braunii HOM05D001069 ORTHO05D007586 9.3e-34 147.1 126 61.9
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 1.5e-31 139.8 150 55.3
Pp3c16_6640 Physcomitrium patens HOM05D001069 ORTHO05D007586 5.6e-31 137.9 129 59.7
AagrBONN_evm.TU.Sc2ySwM_369.398 Anthoceros agrestis HOM05D001069 ORTHO05D007586 7.4e-31 137.5 129 57.4
Mapoly0094s0008 Marchantia polymorpha HOM05D001069 ORTHO05D007586 2.4e-29 132.5 129 56.6
Sabra13G0038700 Salix brachista HOM05D001069 ORTHO05D007586 2.0e-28 129.4 90 75.6
arahy.Tifrunner.gnm1.ann1.VQ2WN5 Arachis hypogaea HOM05D001069 ORTHO05D007586 7.6e-28 127.5 85 75.3
SMO356G0364 Selaginella moellendorffii HOM05D001069 ORTHO05D007586 4.9e-27 124.8 130 53.1
Lsat_1_v5_gn_5_68360 Lactuca sativa HOM05D001069 ORTHO05D007586 1.4e-26 123.2 87 73.6
vmacro13808 Vaccinium macrocarpon HOM05D001069 ORTHO05D007586 3.2e-26 122.1 87 74.7
SHI18420 Sapria himalayana HOM05D001069 ORTHO05D007586 1.6e-22 109.8 100 59.0
MCO16G237 Micromonas commoda HOM05D001069 ORTHO05D007586 5.3e-21 104.8 121 46.3
PRCOL_00003582 Prasinoderma coloniale HOM05D001069 ORTHO05D007586 1.8e-16 89.7 121 42.1
Cre16.g671750 Chlamydomonas reinhardtii HOM05D001069 ORTHO05D007586 2.3e-16 89.4 121 43.8
TAR365G0807 Trochodendron aralioides HOM05D001069 ORTHO05D007586 5.7e-15 84.7 61 70.5
arahy.Tifrunner.gnm1.ann1.X5I3PL Arachis hypogaea HOM05D001069 ORTHO05D007586 4.2e-10 68.6 46 73.9
arahy.Tifrunner.gnm1.ann1.JAH3YR Arachis hypogaea HOM05D001069 ORTHO05D007586 1.3e-08 63.5 35 85.7
Sabra13G0038600 Salix brachista HOM05D000002 ORTHO05D000001 2.3e-08 62.8 44 77.3
SHI18422 Sapria himalayana HOM05D001069 ORTHO05D007586 1.5e-07 60.1 38 73.7
arahy.Tifrunner.gnm1.ann1.VDJK8S Arachis hypogaea HOM05D001069 ORTHO05D007586 2.5e-07 59.3 50 58.0
TAR633G2811 Trochodendron aralioides HOM05D001069 ORTHO05D007586 3.3e-07 58.9 32 84.4
Cfa022668 Carpinus fangiana HOM05D013358 ORTHO05D124219 4.8e-06 55.1 123 33.3


User provided reference genes

Program Settings