Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 2.5e-153 545.4 279 100.0
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 3.5e-139 498.4 279 91.0
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 1.9e-132 476.1 279 87.8
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 1.9e-132 476.1 279 86.7
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 2.4e-132 475.7 279 87.1
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 4.1e-132 474.9 279 87.1
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 2.5e-129 465.7 279 86.7
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 4.3e-129 464.9 279 84.9
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 1.1e-127 460.3 279 84.6
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 2.0e-126 456.1 299 79.9
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 9.9e-126 453.8 279 83.2
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 6.0e-123 444.5 279 84.6
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 7.3e-121 437.6 279 83.2
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 7.3e-121 437.6 279 83.2
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 2.2e-109 399.4 279 74.6
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 4.9e-101 371.7 277 69.0
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 2.3e-98 362.8 279 67.0
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 1.2e-86 323.9 240 66.2
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 2.5e-84 316.2 243 63.8
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 7.2e-84 314.7 278 59.0
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 2.1e-83 313.2 246 62.2
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 7.9e-83 311.2 248 63.3
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 3.9e-82 308.9 253 61.3
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 1.9e-81 306.6 254 61.0
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 2.5e-81 306.2 240 62.9
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 4.3e-81 305.4 278 57.2
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 5.7e-81 305.1 248 61.7
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 5.7e-81 305.1 252 62.7
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 5.7e-81 305.1 241 63.9
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 1.6e-80 303.5 239 63.2
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 2.2e-80 303.1 230 64.8
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 2.8e-80 302.8 266 59.8
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 2.8e-80 302.8 244 63.5
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 6.3e-80 301.6 243 60.9
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 1.4e-79 300.4 256 58.6
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 1.8e-79 300.1 242 62.0
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 1.8e-79 300.1 241 62.7
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 4.1e-79 298.9 241 60.6
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 5.3e-79 298.5 233 64.4
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 9.1e-79 297.7 239 60.7
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 2.0e-78 296.6 278 57.2
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 2.0e-78 296.6 273 57.5
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 2.6e-78 296.2 249 60.6
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 3.4e-78 295.8 240 61.7
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 3.4e-78 295.8 268 56.7
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 3.4e-78 295.8 278 57.6
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 3.4e-78 295.8 233 61.4
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 5.9e-78 295.0 251 59.4
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 1.7e-77 293.5 244 60.2
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 3.8e-77 292.4 251 59.0
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 5.0e-77 292.0 232 62.5
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 6.5e-77 291.6 236 62.3
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 8.5e-77 291.2 243 60.1
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 1.4e-76 290.4 248 56.9
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 1.9e-76 290.0 233 61.4
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 4.2e-76 288.9 232 61.2
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 5.5e-76 288.5 231 60.2
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 7.2e-76 288.1 255 57.3
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 9.4e-76 287.7 245 58.0
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 1.6e-75 287.0 240 58.3
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 2.1e-75 286.6 258 57.4
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 4.6e-75 285.4 253 59.3
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 6.1e-75 285.0 248 59.7
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 1.0e-74 284.3 241 59.8
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 1.8e-74 283.5 247 56.7
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 3.0e-74 282.7 246 56.1
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 3.9e-74 282.3 265 54.7
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 3.9e-74 282.3 258 55.4
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 5.1e-74 282.0 242 59.1
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 5.1e-74 282.0 225 60.4
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 8.8e-74 281.2 265 54.7
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 2.6e-73 279.6 241 56.8
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 3.3e-73 279.3 264 53.8
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 8.2e-72 274.6 241 56.4
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 8.2e-72 274.6 241 56.4
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 8.2e-72 274.6 272 55.1
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 3.1e-71 272.7 273 52.4
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.7e-69 266.9 268 53.0
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 2.9e-69 266.2 276 53.3
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 8.5e-69 264.6 268 52.6
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 1.4e-68 263.8 251 55.4
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 6.1e-67 258.5 224 58.9
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 3.0e-66 256.1 206 62.6
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 8.8e-66 254.6 205 59.0
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 1.2e-62 244.2 185 64.9
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 1.2e-62 244.2 249 52.2
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 2.2e-61 240.0 198 61.1
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 6.5e-61 238.4 239 50.6
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 8.5e-61 238.0 263 48.7
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 1.5e-60 237.3 245 49.4
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 2.5e-60 236.5 198 61.1
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 4.2e-60 235.7 186 60.2
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 5.2e-58 228.8 229 53.3
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 2.6e-57 226.5 246 47.2
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 3.3e-57 226.1 257 47.5
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 9.7e-57 224.6 194 55.7
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 8.2e-56 221.5 218 52.8
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 2.4e-55 219.9 225 52.0
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.0e-54 216.9 185 56.2
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.2e-52 209.5 180 56.1
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 2.8e-43 179.9 159 57.2
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 7.5e-41 171.8 122 64.8
SMO116G0134 Selaginella moellendorffii HOM05D005360 ORTHO05D006501 1.3e-40 171.0 220 40.0
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 1.7e-40 170.6 124 65.3
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.9e-40 169.1 187 47.6
VMungo0540G0253 Vigna mungo HOM05D005360 ORTHO05D006501 3.1e-39 166.4 149 58.4
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.6e-37 158.7 223 41.3
Cpa.g.sc2403.1 Carica papaya HOM05D005360 ORTHO05D006501 3.2e-31 139.8 155 51.6
Gohir.A10G063101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.8e-27 126.7 144 46.5
Gohir.A11G191650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.8e-25 119.0 254 35.4
BcaC07g37801 Brassica carinata HOM05D005360 ORTHO05D006501 1.7e-24 117.5 98 65.3
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 2.2e-24 117.1 115 50.4
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 2.9e-24 116.7 124 47.6
FAN09G1017 Fragaria x ananassa HOM05D005360 ORTHO05D006501 5.4e-23 112.5 110 50.9
Gohir.A09G043650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.2e-22 111.3 122 47.5
FAN09G0332 Fragaria x ananassa HOM05D005360 ORTHO05D006501 3.3e-20 103.2 74 63.5
AUR62023988 Chenopodium quinoa HOM05D005360 ORTHO05D006501 8.1e-19 98.6 86 59.3
Gohir.A06G034300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 8.1e-19 98.6 103 47.6
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.4e-17 92.8 70 58.6
Zm00001eb137350 Zea mays HOM05D005360 ORTHO05D006501 6.4e-16 89.0 82 45.1
Gohir.A05G334300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.4e-15 87.8 123 42.3
FAN04G1623 Fragaria x ananassa HOM05D005360 ORTHO05D006501 9.2e-15 85.1 66 60.6
SEGI_40723 Sequoiadendron giganteum HOM05D005360 ORTHO05D006501 3.9e-13 79.7 108 40.7
Gohir.A06G133300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.5e-12 77.8 99 41.4
Gohir.A06G038884 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.5e-12 77.0 136 38.2
Gohir.1Z049508 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.5e-09 67.8 87 41.4
Gohir.A11G000150 Gossypium hirsutum HOM05D005360 ORTHO05D026494 3.4e-09 66.6 76 48.7
Eucgr.L03607 Eucalyptus grandis HOM05D005360 ORTHO05D006501 5.8e-09 65.9 53 50.9
Gohir.A02G089101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.4e-07 60.5 76 42.1
Zm00001eb350410 Zea mays HOM05D005360 ORTHO05D006501 1.6e-06 57.8 47 46.8
Zm00001eb410990 Zea mays HOM05D005360 ORTHO05D006501 1.6e-06 57.8 47 46.8
FvH4_1g23850 Fragaria vesca HOM05D005360 ORTHO05D006501 4.6e-06 56.2 41 63.4


User provided reference genes

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