Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g06620 Schrenkiella parvula HOM05D007629 ORTHO05D009511 1.2e-58 229.9 145 100.0
AL1G18320 Arabidopsis lyrata HOM05D007629 ORTHO05D009511 1.6e-55 219.5 145 89.7
Thhalv10009537m.g Eutrema salsugineum HOM05D007629 ORTHO05D009511 8.1e-55 217.2 146 95.2
AT1G07985 Arabidopsis thaliana HOM05D007629 ORTHO05D009511 1.8e-54 216.1 145 89.0
Carub.0001s0734 Capsella rubella HOM05D007629 ORTHO05D009511 1.1e-51 206.8 145 89.0
CARHR007770 Cardamine hirsuta HOM05D007629 ORTHO05D009511 1.9e-51 206.1 146 93.2
BraA06t23712Z Brassica rapa HOM05D000280 ORTHO05D000632 6.2e-47 191.0 145 84.8
BcaB02g06696 Brassica carinata HOM05D007629 ORTHO05D009511 5.2e-46 188.0 147 84.4
BcaB03g13359 Brassica carinata HOM05D007629 ORTHO05D009511 8.4e-44 180.6 144 77.1
BraA08t35446Z Brassica rapa HOM05D000280 ORTHO05D000632 2.4e-43 179.1 147 80.3
BolC5t29361H Brassica oleracea HOM05D000280 ORTHO05D000632 4.8e-39 164.9 145 77.2
BcaC05g24715 Brassica carinata HOM05D007629 ORTHO05D009511 6.2e-39 164.5 145 77.2
BcaC07g42509 Brassica carinata HOM05D007629 ORTHO05D009511 9.0e-38 160.6 143 69.2
Aa31sc522G10 Aethionema arabicum HOM05D007629 ORTHO05D009511 1.6e-34 149.8 146 63.0
A09p66070 Brassica napus HOM05D001466 ORTHO05D001452 6.2e-31 137.9 100 84.0
BraA09t41945Z Brassica rapa HOM05D001466 ORTHO05D001452 6.2e-31 137.9 100 84.0
C08p50220 Brassica napus HOM05D001466 ORTHO05D001452 1.4e-27 126.7 100 79.0
Manes.07G006300 Manihot esculenta HOM05D007629 ORTHO05D009511 6.9e-22 107.8 106 60.4
BolC8t52551H Brassica oleracea HOM05D001466 ORTHO05D001452 6.5e-20 101.3 97 60.8
Gohir.A08G053900 Gossypium hirsutum HOM05D007629 ORTHO05D009511 3.5e-18 95.5 113 52.2
Gohir.D08G063600 Gossypium hirsutum HOM05D007629 ORTHO05D009511 4.6e-18 95.1 112 52.7
Gorai.004G065600 Gossypium raimondii HOM05D007629 ORTHO05D009511 4.6e-18 95.1 112 52.7
Atru.chr11.2627 Acer truncatum HOM05D007629 ORTHO05D009511 1.3e-17 93.6 105 55.2
Sed0004901 Sechium edule HOM05D007629 ORTHO05D009511 1.8e-17 93.2 105 57.1
Thecc.01G410700 Theobroma cacao HOM05D007629 ORTHO05D009511 1.8e-17 93.2 100 55.0
EL10Ac2g04331 Beta vulgaris HOM05D007629 ORTHO05D009511 3.9e-17 92.0 141 45.4
MELO3C023979.2 Cucumis melo HOM05D007629 ORTHO05D009511 3.9e-17 92.0 105 57.1
CsaV3_3G032130 Cucumis sativus L. HOM05D007629 ORTHO05D009511 8.7e-17 90.9 105 55.2
TAR369G1117 Trochodendron aralioides HOM05D007629 ORTHO05D009511 1.9e-16 89.7 105 59.0
ClCG10G012340 Citrullus lanatus HOM05D007629 ORTHO05D009511 2.5e-16 89.4 105 54.3
Glyma.13G202600 Glycine max HOM05D007629 ORTHO05D009511 2.5e-16 89.4 102 56.9
FvH4_7g01080 Fragaria vesca HOM05D007629 ORTHO05D009511 3.3e-16 89.0 117 52.1
FAN06G2853 Fragaria x ananassa HOM05D007629 ORTHO05D009511 3.3e-16 89.0 117 52.1
FAN03G3264 Fragaria x ananassa HOM05D007629 ORTHO05D009511 4.3e-16 88.6 117 51.3
Phvul.011G211600 Phaseolus vulgaris HOM05D007629 ORTHO05D009511 5.7e-16 88.2 101 53.5
RcHm_v2.0_Chr1g0316061 Rosa chinensis HOM05D007629 ORTHO05D009511 5.7e-16 88.2 114 51.8
arahy.Tifrunner.gnm1.ann1.4N8Z75 Arachis hypogaea HOM05D007629 ORTHO05D009511 1.6e-15 86.7 101 55.4
arahy.Tifrunner.gnm1.ann1.CVX1Z9 Arachis hypogaea HOM05D007629 ORTHO05D009511 2.2e-15 86.3 101 55.4
Lsat_1_v5_gn_4_31601 Lactuca sativa HOM05D007629 ORTHO05D009511 2.2e-15 86.3 104 53.8
QL04p006494 Quercus lobata HOM05D007629 ORTHO05D009511 2.2e-15 86.3 103 58.3
Actinidia20665 Actinidia chinensis HOM05D007629 ORTHO05D009511 3.7e-15 85.5 102 53.9
Lalb_Chr01g0008051 Lupinus albus HOM05D007629 ORTHO05D009511 4.8e-15 85.1 100 55.0
PGSC0003DMG400006802 Solanum tuberosum HOM05D007629 ORTHO05D009511 4.8e-15 85.1 102 54.9
FAN01G0239 Fragaria x ananassa HOM05D007629 ORTHO05D009511 6.3e-15 84.7 112 51.8
Potri.001G266500 Populus trichocarpa HOM05D007629 ORTHO05D009511 6.3e-15 84.7 136 47.1
Atru.chr11.2625 Acer truncatum HOM05D007629 ORTHO05D009511 8.2e-15 84.3 107 51.4
Ciclev10033658m.g Citrus clementina HOM05D007629 ORTHO05D009511 8.2e-15 84.3 104 53.8
GSVIVG01032094001 Vitis vinifera HOM05D007629 ORTHO05D009511 1.1e-14 84.0 105 52.4
Nitab4.5_0001186g0030 Nicotiana tabacum HOM05D007629 ORTHO05D009511 1.4e-14 83.6 102 53.9
HanXRQChr17g0562961 Helianthus annuus HOM05D007629 ORTHO05D009511 1.8e-14 83.2 101 57.4
Solyc01g087180.4 Solanum lycopersicum HOM05D007629 ORTHO05D009511 1.8e-14 83.2 102 52.9
VMungo1127G0677 Vigna mungo HOM05D007629 ORTHO05D009511 1.8e-14 83.2 90 58.9
CAN.G1560.3 Capsicum annuum HOM05D007629 ORTHO05D009511 2.4e-14 82.8 103 54.4
Dinv43443 Davidia involucrata HOM05D007629 ORTHO05D009511 2.4e-14 82.8 102 55.9
ECA234G2567 Erigeron canadensis HOM05D007629 ORTHO05D009511 2.4e-14 82.8 102 52.0
CANSAT80G2723 Cannabis sativa HOM05D007629 ORTHO05D009511 4.1e-14 82.0 151 41.7
CiPaw.13G005200 Carya illinoinensis HOM05D007629 ORTHO05D009511 6.9e-14 81.3 102 55.9
Actinidia21549 Actinidia chinensis HOM05D007629 ORTHO05D009511 1.2e-13 80.5 102 54.9
Psat4g149000 Pisum sativum HOM05D007629 ORTHO05D009511 1.2e-13 80.5 90 56.7
Aqoxy2G00135 Aquilegia oxysepala HOM05D007629 ORTHO05D009511 1.5e-13 80.1 103 50.5
Eucgr.G03381 Eucalyptus grandis HOM05D007629 ORTHO05D009511 2.0e-13 79.7 106 51.9
Lj3g0012705 Lotus japonicus HOM05D007629 ORTHO05D009511 2.0e-13 79.7 90 57.8
Cc02_g27970 Coffea canephora HOM05D007629 ORTHO05D009511 2.6e-13 79.3 99 52.5
SGA_v2.0_scaffold24G10674 Striga asiatica HOM05D007629 ORTHO05D009511 3.4e-13 79.0 132 42.4
TWI53G0918 Tripterygium wilfordii HOM05D007629 ORTHO05D009511 4.5e-13 78.6 97 56.7
MBI01_g26744_MAGBIO Magnolia biondii HOM05D007629 ORTHO05D009511 5.9e-13 78.2 103 51.5
TPR.G1849 Trifolium pratense HOM05D007629 ORTHO05D009511 5.9e-13 78.2 94 55.3
Ca_23857_v3 Cicer arietinum L. HOM05D007629 ORTHO05D009511 7.7e-13 77.8 101 51.5
Medtr8g037205 Medicago truncatula HOM05D007629 ORTHO05D009511 7.7e-13 77.8 94 55.3
Glyma.12G237100 Glycine max HOM05D007629 ORTHO05D009511 1.0e-12 77.4 102 52.9
MD07G1011000 Malus domestica HOM05D007629 ORTHO05D009511 1.0e-12 77.4 112 48.2
COL.COLO4_04855 Corchorus olitorius HOM05D000074 ORTHO05D000220 1.3e-12 77.0 107 48.6
Nn7g36205 Nelumbo nucifera HOM05D007629 ORTHO05D009511 2.2e-12 76.3 104 50.0
PGR031G1171 Punica granatum HOM05D007629 ORTHO05D009511 2.9e-12 75.9 111 45.9
Duzib138G1419 Durio zibethinus HOM05D007629 ORTHO05D009511 5.0e-12 75.1 116 48.3
Cpa.g.c29394.2 Carica papaya HOM05D007629 ORTHO05D009511 6.5e-12 74.7 97 52.6
Haze_03204 Corylus avellana HOM05D007629 ORTHO05D009511 6.5e-12 74.7 102 52.9
Sed0017474 Sechium edule HOM05D007629 ORTHO05D009511 2.5e-11 72.8 91 56.0
Sc11g0009160 Simmondsia chinensis HOM05D007629 ORTHO05D009511 3.2e-11 72.4 102 50.0
TWI53G0001 Tripterygium wilfordii HOM05D007629 ORTHO05D009511 3.2e-11 72.4 104 49.0
Prupe.2G013500 Prunus persica HOM05D007629 ORTHO05D009511 5.5e-11 71.6 103 50.5
Sabra16G0163500 Salix brachista HOM05D007629 ORTHO05D009511 7.2e-11 71.2 87 54.0
Migut.N01599 Erythranthe guttata HOM05D007629 ORTHO05D009511 4.6e-10 68.6 136 36.0
CSS0036847 Camellia sinensis var. sinensis HOM05D007629 ORTHO05D009511 1.4e-09 67.0 97 51.5
DCAR_029669 Daucus carota HOM05D007629 ORTHO05D009511 6.7e-09 64.7 127 38.6
PSO832G4302 Papaver somniferum HOM05D007629 ORTHO05D009511 4.3e-08 62.0 133 36.8
PSO764G0291 Papaver somniferum HOM05D007629 ORTHO05D009511 9.7e-08 60.8 133 36.1
AUR62023067 Chenopodium quinoa HOM05D007629 ORTHO05D009511 1.3e-07 60.5 92 42.4
CDE10G0639 Ceratophyllum demersum HOM05D007629 ORTHO05D009511 2.4e-06 56.2 89 44.9
ATR0332G023 Amborella trichopoda HOM05D007629 ORTHO05D009511 3.1e-06 55.8 100 41.0
Oeu010795.1 Olea europaea HOM05D007629 ORTHO05D009511 3.1e-06 55.8 86 47.7
CDE05G3301 Ceratophyllum demersum HOM05D007629 ORTHO05D009511 4.1e-06 55.5 95 42.1
Nitab4.5_0026617g0010 Nicotiana tabacum HOM05D007629 ORTHO05D009511 4.1e-06 55.5 81 49.4


User provided reference genes

Program Settings