Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g06540 Schrenkiella parvula HOM05D008454 ORTHO05D010339 4.7e-57 224.6 136 100.0
CARHR007670 Cardamine hirsuta HOM05D008454 ORTHO05D010339 7.4e-42 174.1 98 87.8
BolC8t47139H Brassica oleracea HOM05D008454 ORTHO05D010339 2.8e-41 172.2 99 84.8
Carub.0001s0720 Capsella rubella HOM05D008454 ORTHO05D010339 2.8e-41 172.2 97 86.6
BcaB03g13363 Brassica carinata HOM05D008454 ORTHO05D010339 3.7e-41 171.8 133 69.2
AT1G07860 Arabidopsis thaliana HOM05D008454 ORTHO05D010339 3.4e-39 165.2 98 85.7
AL1G18140 Arabidopsis lyrata HOM05D008454 ORTHO05D010339 5.8e-39 164.5 97 85.6
C08p03410 Brassica napus HOM05D000134 ORTHO05D000168 4.5e-31 138.3 81 82.7
A08p35420 Brassica napus HOM05D000134 ORTHO05D000168 5.8e-31 137.9 81 82.7
BraA08t35448Z Brassica rapa HOM05D000134 ORTHO05D000168 5.8e-31 137.9 81 82.7
AT1G07870 Arabidopsis thaliana HOM05D000134 ORTHO05D000168 3.8e-30 135.2 77 87.0
THA.LOC104800629 Tarenaya hassleriana HOM05D008454 ORTHO05D010339 4.8e-25 118.2 100 60.0
Aa31LG5G7630 Aethionema arabicum HOM05D008454 ORTHO05D010339 2.5e-21 105.9 95 53.7
Cpa.g.sc139.21 Carica papaya HOM05D008454 ORTHO05D010339 2.6e-15 85.9 86 47.7
COL.COLO4_18399 Corchorus olitorius HOM05D008454 ORTHO05D010339 2.7e-12 75.9 76 44.7
Sc12g0000230 Simmondsia chinensis HOM05D008454 ORTHO05D010339 3.9e-11 72.0 94 43.6
CiPaw.13G103800 Carya illinoinensis HOM05D008454 ORTHO05D010339 1.1e-10 70.5 72 48.6
Gohir.A07G093700 Gossypium hirsutum HOM05D008454 ORTHO05D010339 1.1e-10 70.5 99 36.4
Gohir.D07G098350 Gossypium hirsutum HOM05D008454 ORTHO05D010339 1.1e-10 70.5 100 36.0
Duzib168G1836 Durio zibethinus HOM05D008454 ORTHO05D010339 1.5e-10 70.1 72 45.8
Thecc.09G334800 Theobroma cacao HOM05D008454 ORTHO05D010339 2.0e-10 69.7 95 40.0
Potri.009G093700 Populus trichocarpa HOM05D008454 ORTHO05D010339 2.6e-10 69.3 68 47.1
Gorai.001G105700 Gossypium raimondii HOM05D008454 ORTHO05D010339 3.3e-10 68.9 76 39.5
Glyma.11G147735 Glycine max HOM05D008454 ORTHO05D010339 1.8e-08 63.2 85 40.0
Haze_23972 Corylus avellana HOM05D008454 ORTHO05D010339 2.4e-08 62.8 84 36.9
VMungo1127G1552 Vigna mungo HOM05D008454 ORTHO05D010339 2.4e-08 62.8 98 39.8
MD11G1119900 Malus domestica HOM05D008454 ORTHO05D010339 5.3e-08 61.6 66 50.0
Cfa011401 Carpinus fangiana HOM05D008454 ORTHO05D010339 9.1e-08 60.8 75 41.3
Hma1.2p1_0861F.1_g229610 Hydrangea macrophylla HOM05D008454 ORTHO05D010339 9.1e-08 60.8 98 40.8
Ca_19220_v3 Cicer arietinum L. HOM05D000134 ORTHO05D002886 1.2e-07 60.5 80 38.8
arahy.Tifrunner.gnm1.ann1.06S5B0 Arachis hypogaea HOM05D008454 ORTHO05D010339 2.0e-07 59.7 80 40.0
arahy.Tifrunner.gnm1.ann1.DB83L5 Arachis hypogaea HOM05D008454 ORTHO05D010339 2.0e-07 59.7 80 40.0
QL01p035454 Quercus lobata HOM05D008454 ORTHO05D010339 2.0e-07 59.7 68 45.6
Gorai.003G139500 Gossypium raimondii HOM05D008454 ORTHO05D010339 7.7e-07 57.8 50 46.0
Medtr4g061580 Medicago truncatula HOM05D008454 ORTHO05D010339 1.0e-06 57.4 92 33.7
Psat7g221640 Pisum sativum HOM05D008454 ORTHO05D010339 1.3e-06 57.0 80 36.2
Prupe.6G090000 Prunus persica HOM05D008454 ORTHO05D010339 1.3e-06 57.0 68 41.2
Gohir.D03G132550 Gossypium hirsutum HOM05D008454 ORTHO05D010339 1.7e-06 56.6 75 38.7
Lj3g0021113 Lotus japonicus HOM05D008454 ORTHO05D010339 1.7e-06 56.6 66 42.4
Dinv06346 Davidia involucrata HOM05D008454 ORTHO05D010339 2.2e-06 56.2 56 51.8
Actinidia00800 Actinidia chinensis HOM05D008454 ORTHO05D010339 2.9e-06 55.8 57 47.4
TWI31G0064 Tripterygium wilfordii HOM05D008454 ORTHO05D010339 6.5e-06 54.7 94 37.2
TPR.G2967 Trifolium pratense HOM05D008454 ORTHO05D010339 8.5e-06 54.3 80 37.5


User provided reference genes

Program Settings